Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47142 * 2 1 4 4 C 1.36776 * 119.99750 * 262.35679 * 3 2 1 5 5 H 1.08003 * 119.99756 * 195.97406 * 4 3 2 6 6 C 1.39110 * 120.00191 * 15.96111 * 4 3 2 7 7 N 1.31320 * 119.99902 * 19.84545 * 6 4 3 8 8 Si 1.86798 * 120.00325 * 199.83530 * 6 4 3 9 9 H 1.48498 * 109.46934 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46840 * 120.00450 * 8 6 4 11 11 H 1.48500 * 109.47328 * 240.00611 * 8 6 4 12 12 C 1.34780 * 120.00018 * 82.35053 * 3 2 1 13 13 O 1.21561 * 119.99540 * 182.68969 * 12 3 2 14 14 C 1.48059 * 120.00254 * 2.69308 * 12 3 2 15 15 C 1.39718 * 119.66389 * 172.91677 * 14 12 3 16 16 C 1.38494 * 119.24163 * 179.97438 * 15 14 12 17 17 C 1.38621 * 118.56434 * 359.75165 * 16 15 14 18 18 C 1.39572 * 119.26438 * 0.51100 * 17 16 15 19 19 C 1.48219 * 119.65229 * 179.75448 * 18 17 16 20 20 O 1.21516 * 119.99780 * 359.72324 * 19 18 17 21 21 N 1.34780 * 120.00409 * 179.72681 * 19 18 17 22 22 C 1.46495 * 120.00139 * 179.97438 * 21 19 18 23 23 N 1.32381 * 120.69849 * 359.47545 * 18 17 16 24 24 H 1.09008 * 109.46923 * 299.99950 * 1 2 3 25 25 H 1.08999 * 109.47201 * 60.00548 * 1 2 3 26 26 H 1.09007 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47500 * 239.99774 * 2 1 3 28 28 H 1.09009 * 109.47223 * 119.99603 * 2 1 3 29 29 H 0.96996 * 120.00584 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.37807 * 359.97176 * 15 14 12 31 31 H 1.08000 * 120.71737 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.37255 * 180.24339 * 17 16 15 33 33 H 0.97000 * 119.99606 * 359.97438 * 21 19 18 34 34 H 1.08997 * 109.47220 * 60.00039 * 22 21 19 35 35 H 1.09001 * 109.47224 * 179.97438 * 22 21 19 36 36 H 1.09003 * 109.47285 * 300.00127 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3948 1.9734 -1.1740 5 1 2.9872 2.8764 -1.1577 6 6 2.0150 1.4127 -2.3891 7 7 1.0041 0.5758 -2.4386 8 14 2.9425 1.8501 -3.9504 9 1 4.0315 2.8067 -3.6275 10 1 3.5249 0.6186 -4.5416 11 1 2.0087 2.4725 -4.9230 12 6 2.0965 2.0684 1.1568 13 8 2.4551 3.2299 1.1507 14 6 1.7456 1.4086 2.4350 15 6 1.9695 2.0760 3.6419 16 6 1.6375 1.4508 4.8323 17 6 1.0869 0.1797 4.7824 18 6 0.8948 -0.4324 3.5428 19 6 0.3117 -1.7937 3.4797 20 8 0.0084 -2.3728 4.5040 21 7 0.1180 -2.3892 2.2862 22 6 -0.4577 -3.7348 2.2239 23 7 1.2227 0.1921 2.4226 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.7390 0.1850 -3.2858 30 1 2.3966 3.0680 3.6465 31 1 1.8007 1.9445 5.7789 32 1 0.8135 -0.3332 5.6927 33 1 0.3599 -1.9268 1.4686 34 1 -1.4484 -3.7276 2.6784 35 1 -0.5383 -4.0477 1.1829 36 1 0.1847 -4.4303 2.7641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116278957.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = -18.376215 kcal Electronic energy + Delta-G solvation = -22082.022809 eV Core-core repulsion = 18760.067272 eV Total energy + Delta-G solvation = -3321.955538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94996 -40.49906 -39.39423 -37.15990 -35.76737 -34.21739 -33.29679 -32.47559 -31.23493 -28.14093 -27.43603 -25.27447 -24.86748 -23.85233 -22.05266 -21.25673 -19.19089 -18.94269 -18.32181 -17.20372 -17.05933 -16.64621 -16.53331 -16.38614 -15.84955 -15.78335 -15.23459 -14.75088 -14.71241 -14.53790 -14.05546 -13.77725 -13.61822 -13.17274 -13.05304 -12.98789 -12.82589 -12.62497 -12.20691 -12.06638 -11.84117 -11.50549 -10.98525 -10.83988 -10.73308 -10.35545 -10.17879 -10.05782 -9.62236 -8.35395 -5.92553 -0.48590 -0.04195 1.34909 1.44639 1.54167 1.57754 2.10387 2.12583 2.24763 2.77765 2.85207 3.12110 3.16719 3.70405 3.92597 3.98601 4.03193 4.37159 4.44721 4.56087 4.63731 4.70865 4.91283 4.92534 5.00319 5.05123 5.08070 5.19598 5.34081 5.37767 5.47079 5.55718 5.97280 6.03319 6.27406 6.46777 6.65746 7.04650 7.11787 7.38561 7.98362 8.57483 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.006591 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.841898 B = 4247.495819 C = 5528.400650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.126 3.874 3 N -0.412 5.412 4 C -0.349 4.349 5 H 0.078 0.922 6 C 0.008 3.992 7 N -0.854 5.854 8 Si 0.990 3.010 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.274 1.274 12 C 0.451 3.549 13 O -0.635 6.635 14 C 0.085 3.915 15 C -0.106 4.106 16 C -0.065 4.065 17 C -0.101 4.101 18 C 0.044 3.956 19 C 0.573 3.427 20 O -0.560 6.560 21 N -0.717 5.717 22 C 0.079 3.921 23 N -0.434 5.434 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.279 0.721 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.169 0.831 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -7.704 8.337 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.003 3.997 3 N -0.125 5.125 4 C -0.477 4.477 5 H 0.096 0.904 6 C -0.197 4.197 7 N -0.490 5.490 8 Si 0.814 3.186 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.199 1.199 12 C 0.241 3.759 13 O -0.525 6.525 14 C -0.055 4.055 15 C -0.128 4.128 16 C -0.090 4.090 17 C -0.122 4.122 18 C -0.096 4.096 19 C 0.359 3.641 20 O -0.439 6.439 21 N -0.370 5.370 22 C -0.064 4.064 23 N -0.150 5.150 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.209 0.791 32 H 0.186 0.814 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.254 -8.202 8.017 11.688 hybrid contribution 0.523 1.014 -0.644 1.310 sum -1.731 -7.188 7.373 10.441 Atomic orbital electron populations 1.21866 0.95479 1.00281 1.00275 1.21836 0.95534 0.81531 1.00796 1.43981 1.50860 1.12387 1.05296 1.19815 1.32420 1.11799 0.83673 0.90437 1.26089 0.95685 0.96407 1.01539 1.70117 1.21722 1.29100 1.28097 0.84936 0.78243 0.78579 0.76890 1.20064 1.18788 1.19914 1.18089 0.87520 0.86118 0.84141 1.90546 1.56980 1.18093 1.86905 1.21246 0.98634 0.90893 0.94682 1.22412 0.97089 1.01519 0.91774 1.21988 0.94283 0.93505 0.99197 1.22453 0.95843 0.95468 0.98474 1.21457 1.01456 0.95813 0.90827 1.17954 0.77783 0.84372 0.84010 1.90725 1.53111 1.65348 1.34729 1.46074 1.62808 1.19226 1.08850 1.21840 0.98694 0.81434 1.04414 1.68124 1.09008 1.08499 1.29360 0.95893 0.91676 0.92237 0.91481 0.89662 0.91088 0.83372 0.79062 0.81397 0.74714 0.91836 0.87717 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 8.10 71.98 0.58 -4.41 16 2 C 0.13 5.57 4.61 86.38 0.40 5.97 16 3 N -0.41 -21.53 2.64 -638.59 -1.68 -23.21 16 4 C -0.35 -19.43 9.35 84.13 0.79 -18.64 16 5 H 0.08 4.65 7.37 -2.91 -0.02 4.63 16 6 C 0.01 0.41 4.93 84.98 0.42 0.83 16 7 N -0.85 -41.39 8.42 21.69 0.18 -41.20 16 8 Si 0.99 40.07 29.60 68.60 2.03 42.10 16 9 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 C 0.45 23.30 7.54 86.85 0.65 23.96 16 13 O -0.64 -36.72 15.99 -3.91 -0.06 -36.78 16 14 C 0.09 3.48 6.50 42.02 0.27 3.76 16 15 C -0.11 -3.47 9.63 22.69 0.22 -3.25 16 16 C -0.06 -1.51 10.16 22.42 0.23 -1.28 16 17 C -0.10 -2.60 9.63 22.68 0.22 -2.38 16 18 C 0.04 1.41 6.75 42.04 0.28 1.70 16 19 C 0.57 17.93 7.81 86.90 0.68 18.61 16 20 O -0.56 -18.90 16.32 -3.77 -0.06 -18.96 16 21 N -0.72 -19.71 5.70 -487.10 -2.78 -22.48 16 22 C 0.08 1.60 10.70 127.77 1.37 2.97 16 23 N -0.43 -16.00 3.49 -174.14 -0.61 -16.61 16 24 H 0.02 0.95 6.63 -2.38 -0.02 0.93 16 25 H 0.06 3.09 5.99 -2.39 -0.01 3.07 16 26 H 0.06 2.02 6.74 -2.38 -0.02 2.01 16 27 H 0.07 3.14 6.14 -2.39 -0.01 3.12 16 28 H 0.09 3.50 4.72 -2.43 -0.01 3.49 16 29 H 0.28 12.43 8.31 -92.71 -0.77 11.66 16 30 H 0.15 4.78 7.66 -2.91 -0.02 4.76 16 31 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.17 3.56 7.64 -2.91 -0.02 3.53 16 33 H 0.41 11.91 4.57 -92.71 -0.42 11.48 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.02 297.44 3.84 -64.18 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.71 Total: 25.13 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 6.11 Total: 27.84 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -4.89 Total: -103.51 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.12 Total: -55.74 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -68.02 3.84 -64.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116278957.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.808 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds