Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47224 * 2 1 4 4 C 1.50709 * 109.46915 * 240.00459 * 2 1 3 5 5 H 1.08000 * 119.99415 * 245.45946 * 4 2 1 6 6 C 1.37869 * 120.00027 * 65.45875 * 4 2 1 7 7 N 1.31520 * 120.00357 * 9.55749 * 6 4 2 8 8 Si 1.86804 * 119.99998 * 189.55961 * 6 4 2 9 9 H 1.48499 * 109.46940 * 84.99358 * 8 6 4 10 10 H 1.48497 * 109.47317 * 204.99423 * 8 6 4 11 11 H 1.48498 * 109.46937 * 324.99257 * 8 6 4 12 12 N 1.46499 * 109.47216 * 120.00435 * 2 1 3 13 13 C 1.34776 * 119.99750 * 274.99595 * 12 2 1 14 14 O 1.21285 * 120.00106 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99811 * 180.02562 * 13 12 2 16 16 C 1.50709 * 109.46923 * 180.02562 * 15 13 12 17 17 C 1.38621 * 120.32209 * 90.00025 * 16 15 13 18 18 C 1.38589 * 118.48703 * 180.02562 * 17 16 15 19 19 C 1.39310 * 119.05789 * 359.97438 * 18 17 16 20 20 C 1.48168 * 119.72268 * 180.02562 * 19 18 17 21 21 N 1.34779 * 119.99899 * 179.97438 * 20 19 18 22 22 O 1.21511 * 120.00216 * 359.97438 * 20 19 18 23 23 N 1.32717 * 120.55551 * 359.97438 * 19 18 17 24 24 C 1.31519 * 121.64082 * 0.04899 * 23 19 18 25 25 H 1.09002 * 109.47297 * 63.67820 * 1 2 3 26 26 H 1.09005 * 109.47114 * 183.67543 * 1 2 3 27 27 H 1.09002 * 109.47497 * 303.67350 * 1 2 3 28 28 H 0.96999 * 120.00457 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00063 * 95.00025 * 12 2 1 30 30 H 1.08994 * 109.47706 * 60.00233 * 15 13 12 31 31 H 1.09000 * 109.47103 * 299.99982 * 15 13 12 32 32 H 1.07996 * 120.75947 * 359.97438 * 17 16 15 33 33 H 1.07998 * 120.47818 * 179.72421 * 18 17 16 34 34 H 0.96998 * 120.00319 * 0.02562 * 21 20 19 35 35 H 0.96999 * 120.00303 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.55324 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5785 -1.6370 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2991 1.0358 -2.5935 8 14 2.1758 -1.1779 -4.0103 9 1 1.0238 -2.0608 -4.3242 10 1 2.4225 -0.2612 -5.1522 11 1 3.3843 -2.0071 -3.7712 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6500 -0.7287 3.5873 16 6 2.7001 0.2395 4.7412 17 6 1.5997 0.3993 5.5690 18 6 1.6872 1.3003 6.6183 19 6 2.8716 2.0098 6.8040 20 6 2.9815 2.9764 7.9216 21 7 4.1250 3.6654 8.1066 22 8 2.0407 3.1480 8.6712 23 7 3.9028 1.8264 5.9889 24 6 3.8466 0.9782 4.9853 25 1 -0.3634 0.4557 -0.9211 26 1 -0.3633 -1.0256 0.0659 27 1 -0.3634 0.5698 0.8552 28 1 1.1315 1.4107 -3.4723 29 1 2.2490 -1.6318 1.1525 30 1 3.6493 -1.1205 3.3978 31 1 1.9778 -1.5510 3.8324 32 1 0.6945 -0.1649 5.3995 33 1 0.8477 1.4533 7.2803 34 1 4.8759 3.5287 7.5080 35 1 4.1968 4.2985 8.8380 36 1 4.7058 0.8558 4.3425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118965537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = -52.280608 kcal Electronic energy + Delta-G solvation = -20393.252303 eV Core-core repulsion = 17069.826561 eV Total energy + Delta-G solvation = -3323.425742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75456 -39.25562 -38.49379 -34.94405 -34.12531 -33.21450 -32.41496 -32.01790 -29.56374 -27.77936 -25.27567 -24.13550 -23.50359 -21.42189 -20.76745 -19.50358 -18.36516 -17.36469 -17.24669 -16.25583 -15.93174 -15.53225 -15.12957 -15.10500 -14.94207 -14.37037 -14.17313 -13.73421 -13.51183 -13.23360 -12.90540 -12.45233 -12.24019 -11.97978 -11.66934 -11.08568 -11.04528 -10.81093 -10.56568 -10.41935 -10.32154 -9.95760 -9.89050 -9.69514 -9.33388 -9.17831 -8.89889 -8.55518 -8.01647 -6.19188 -4.25326 0.54841 1.16855 2.60255 3.21558 3.23942 3.26306 3.29094 3.30026 3.71506 4.07742 4.14280 4.35655 4.59785 4.71525 4.84751 4.88144 5.12669 5.14838 5.40577 5.45110 5.61348 5.65937 5.89160 6.11406 6.46406 6.56659 6.69671 6.82575 7.02181 7.09522 7.35163 7.47883 7.61625 7.64426 7.78566 8.00956 8.06046 8.58138 8.73498 9.03652 9.40971 10.89224 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.003107 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.563259 B = 9009.116864 C = 9039.123113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.263 3.737 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.502 3.498 14 O -0.548 6.548 15 C -0.108 4.108 16 C -0.076 4.076 17 C -0.071 4.071 18 C -0.106 4.106 19 C 0.059 3.941 20 C 0.582 3.418 21 N -0.837 5.837 22 O -0.541 6.541 23 N -0.458 5.458 24 C 0.112 3.888 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.412 0.588 35 H 0.403 0.597 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -3.165 16.362 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.286 3.714 14 O -0.427 6.427 15 C -0.149 4.149 16 C -0.078 4.078 17 C -0.096 4.096 18 C -0.127 4.127 19 C -0.079 4.079 20 C 0.366 3.634 21 N -0.400 5.400 22 O -0.418 6.418 23 N -0.169 5.169 24 C -0.048 4.048 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.243 0.757 35 H 0.234 0.766 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.127 -1.668 16.783 17.628 hybrid contribution -0.111 -1.255 -1.248 1.774 sum 5.017 -2.923 15.535 16.585 Atomic orbital electron populations 1.22017 0.98871 0.98581 1.00558 1.18760 0.90544 0.94571 0.80026 0.92679 1.21159 1.37374 1.08707 0.90427 0.92034 1.24897 0.94934 0.94616 0.99088 1.69983 1.43669 1.13726 1.24316 0.86517 0.78729 0.79937 0.82249 1.20405 1.21151 1.19880 1.46514 1.65002 1.13576 1.10439 1.20185 0.79192 0.87590 0.84461 1.90708 1.50952 1.15966 1.85030 1.20770 1.04569 0.97711 0.91877 1.20638 0.94702 0.97151 0.95336 1.21490 0.98196 0.96861 0.93102 1.22041 0.98173 0.94658 0.97793 1.20926 0.91793 0.98657 0.96480 1.17897 0.82623 0.79830 0.83079 1.43632 1.16538 1.44571 1.35254 1.90814 1.38232 1.66476 1.46252 1.67462 1.29239 1.16314 1.03885 1.22597 0.97612 0.91017 0.93610 0.90867 0.95231 0.96205 0.92491 0.77833 0.87635 0.87864 0.84051 0.83556 0.75743 0.76619 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.36 37.16 0.35 -3.01 16 2 C 0.26 6.42 2.42 -69.08 -0.17 6.25 16 3 H 0.06 1.59 7.52 -51.93 -0.39 1.20 16 4 C -0.54 -13.81 8.66 -34.44 -0.30 -14.11 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.81 5.17 -17.82 -0.09 1.72 16 7 N -0.88 -24.66 12.16 55.43 0.67 -23.99 16 8 Si 0.90 20.16 29.55 -169.99 -5.02 15.14 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 N -0.71 -13.50 5.07 -54.93 -0.28 -13.78 16 13 C 0.50 8.98 7.79 -10.99 -0.09 8.89 16 14 O -0.55 -12.40 15.70 5.55 0.09 -12.32 16 15 C -0.11 -1.27 5.85 -29.03 -0.17 -1.44 16 16 C -0.08 -0.96 4.40 -104.36 -0.46 -1.42 16 17 C -0.07 -0.86 9.85 -39.31 -0.39 -1.25 16 18 C -0.11 -1.35 9.63 -39.05 -0.38 -1.72 16 19 C 0.06 0.79 6.75 -83.01 -0.56 0.23 16 20 C 0.58 7.50 8.08 -12.18 -0.10 7.41 16 21 N -0.84 -7.53 8.86 30.60 0.27 -7.26 16 22 O -0.54 -8.45 17.16 5.36 0.09 -8.36 16 23 N -0.46 -5.95 9.54 -9.80 -0.09 -6.04 16 24 C 0.11 1.41 10.86 -17.57 -0.19 1.22 16 25 H 0.07 1.89 6.83 -51.93 -0.35 1.54 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 6.18 8.53 -40.82 -0.35 5.84 16 30 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 34 H 0.41 3.19 8.16 -40.82 -0.33 2.86 16 35 H 0.40 2.75 8.93 -40.82 -0.36 2.39 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -33.69 320.42 -6.24 -39.94 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -4.26 Total: 9.06 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.54 Total: 2.78 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.57 Total: -51.06 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.18 Total: -20.67 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.69 -6.24 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118965537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds