Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00275 * 2 1 4 4 N 1.46500 * 109.47664 * 124.99454 * 3 2 1 5 5 C 1.46500 * 120.00264 * 262.62060 * 4 3 2 6 6 C 1.50694 * 109.46908 * 269.99965 * 5 4 3 7 7 H 1.08003 * 120.00489 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99969 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99460 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47260 * 89.99563 * 10 8 6 12 12 H 1.48502 * 109.46639 * 209.99945 * 10 8 6 13 13 H 1.48495 * 109.47112 * 329.99658 * 10 8 6 14 14 C 1.34770 * 119.99739 * 82.61651 * 4 3 2 15 15 O 1.21466 * 120.00036 * 183.14449 * 14 4 3 16 16 C 1.48570 * 120.00168 * 3.14526 * 14 4 3 17 17 C 1.37926 * 120.20679 * 173.51327 * 16 14 4 18 18 C 1.41608 * 118.32524 * 180.02562 * 17 16 14 19 19 O 1.21903 * 120.71476 * 179.97438 * 18 17 16 20 20 N 1.34985 * 118.57477 * 359.97438 * 18 17 16 21 21 C 1.46499 * 119.89309 * 180.02562 * 20 18 17 22 22 C 1.34773 * 120.21538 * 0.27778 * 20 18 17 23 23 N 1.30435 * 121.82224 * 359.42815 * 22 20 18 24 24 H 1.07999 * 119.99949 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00322 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99648 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46605 * 4.99534 * 3 2 1 28 28 H 1.09001 * 109.47263 * 245.00261 * 3 2 1 29 29 H 1.09001 * 109.47068 * 29.99552 * 5 4 3 30 30 H 1.08993 * 109.46987 * 149.99500 * 5 4 3 31 31 H 0.97003 * 119.99625 * 180.02562 * 9 8 6 32 32 H 1.07996 * 120.83721 * 359.97438 * 17 16 14 33 33 H 1.09006 * 109.47077 * 90.00529 * 21 20 18 34 34 H 1.09002 * 109.47446 * 330.00333 * 21 20 18 35 35 H 1.08993 * 109.47620 * 210.00196 * 21 20 18 36 36 H 1.07999 * 119.09053 * 179.69984 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6161 2.0094 2.3743 6 6 3.0470 3.4520 2.3109 7 1 3.5521 3.8267 1.4328 8 6 2.7975 4.2935 3.3743 9 7 2.1829 3.8371 4.4437 10 14 3.3323 6.0816 3.2960 11 1 2.2392 6.9001 2.7127 12 1 3.6375 6.5673 4.6658 13 1 4.5452 6.1987 2.4475 14 6 4.1968 0.7334 1.0290 15 8 4.9450 0.7061 1.9855 16 6 4.6081 0.1069 -0.2539 17 6 5.8864 -0.3882 -0.4060 18 6 6.2359 -0.9766 -1.6457 19 8 7.3538 -1.4275 -1.8277 20 7 5.3048 -1.0275 -2.6216 21 6 5.6351 -1.6303 -3.9153 22 6 4.0737 -0.5208 -2.4115 23 7 3.7372 0.0188 -1.2726 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.5348 1.9585 2.5018 30 1 3.1047 1.5209 3.2173 31 1 2.0070 4.4291 5.1917 32 1 6.6029 -0.3279 0.3998 33 1 5.4037 -2.6952 -3.8895 34 1 6.6972 -1.4941 -4.1191 35 1 5.0502 -1.1504 -4.6998 36 1 3.3442 -0.5668 -3.2065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119258173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = 20.845326 kcal Electronic energy + Delta-G solvation = -21417.395608 eV Core-core repulsion = 18097.140844 eV Total energy + Delta-G solvation = -3320.254764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88183 -39.21613 -37.57196 -35.73853 -35.30083 -33.15424 -32.02963 -31.04655 -28.78805 -27.38904 -25.57109 -24.79625 -24.22844 -22.45790 -20.05297 -19.35172 -18.29520 -17.47274 -16.94835 -16.59607 -16.45695 -15.62038 -15.53990 -14.74865 -14.53060 -14.32204 -14.07555 -13.64902 -13.53163 -13.09823 -13.00283 -12.80496 -12.62652 -12.19036 -11.65693 -11.29627 -11.02703 -10.84110 -10.61468 -10.48559 -10.45006 -10.20313 -10.05490 -9.60064 -9.19005 -8.90733 -8.58760 -8.43683 -7.69951 -6.05228 -4.10411 0.30912 1.58135 2.22804 2.61954 3.07211 3.30395 3.37251 3.41466 3.61291 3.86847 3.97293 4.33540 4.40866 4.47737 4.77292 4.85522 5.12340 5.22129 5.29350 5.38522 5.45314 5.59712 5.66286 5.96274 6.04763 6.26076 6.38856 6.54808 6.95912 6.99089 7.13032 7.41210 7.47371 7.57768 7.63142 7.90778 8.20123 8.31015 8.79430 8.97596 9.54521 11.02860 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.005083 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.958072 B = 5507.615609 C = 6232.342653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C 0.128 3.872 4 N -0.567 5.567 5 C 0.244 3.756 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.552 3.448 15 O -0.524 6.524 16 C 0.140 3.860 17 C -0.222 4.222 18 C 0.519 3.481 19 O -0.535 6.535 20 N -0.526 5.526 21 C 0.057 3.943 22 C 0.359 3.641 23 N -0.508 5.508 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.168 0.832 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 -10.011 -18.501 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.152 4.152 3 C 0.005 3.995 4 N -0.296 5.296 5 C 0.125 3.875 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.335 3.665 15 O -0.400 6.400 16 C 0.019 3.981 17 C -0.248 4.248 18 C 0.318 3.682 19 O -0.413 6.413 20 N -0.245 5.245 21 C -0.085 4.085 22 C 0.075 3.925 23 N -0.231 5.231 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.948 -9.885 -17.587 20.197 hybrid contribution 0.828 0.654 -0.145 1.065 sum -0.121 -9.231 -17.732 19.991 Atomic orbital electron populations 1.23734 0.95906 1.01309 1.03230 1.23246 0.95513 0.99028 0.97414 1.21108 0.92739 0.94533 0.91122 1.48165 1.13637 1.50964 1.16806 1.19421 0.96262 0.91677 0.80133 1.21410 1.38554 0.94323 1.02443 0.92356 1.24928 0.95036 0.98975 0.95041 1.69937 1.41442 1.35949 1.05847 0.86483 0.78967 0.84488 0.77417 1.20598 1.21061 1.19885 1.17780 0.83033 0.80077 0.85573 1.90779 1.52277 1.59529 1.37462 1.21937 0.90240 0.92412 0.93472 1.23410 0.98752 1.04206 0.98432 1.17342 0.84841 0.81485 0.84544 1.90928 1.19834 1.49217 1.81307 1.46701 1.13015 1.48646 1.16108 1.22203 1.04730 0.99347 0.82239 1.25198 0.84693 0.86197 0.96415 1.69032 1.33163 1.21200 0.99743 0.88604 0.89260 0.88337 0.90417 0.86948 0.94470 0.93616 0.92657 0.81414 0.90201 0.88722 0.89088 0.77685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 14.32 29.02 0.42 -2.23 16 2 C -0.13 -1.91 8.69 -36.03 -0.31 -2.22 16 3 C 0.13 2.14 5.45 -5.20 -0.03 2.11 16 4 N -0.57 -12.18 2.46 -177.29 -0.44 -12.62 16 5 C 0.24 6.37 5.15 -5.20 -0.03 6.34 16 6 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 10 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.55 11.85 7.60 -12.00 -0.09 11.76 16 15 O -0.52 -13.30 15.95 5.40 0.09 -13.21 16 16 C 0.14 2.32 6.63 -82.63 -0.55 1.77 16 17 C -0.22 -3.59 9.67 -38.41 -0.37 -3.96 16 18 C 0.52 7.45 7.47 -14.88 -0.11 7.34 16 19 O -0.53 -9.14 16.76 5.01 0.08 -9.05 16 20 N -0.53 -4.99 2.97 -128.43 -0.38 -5.37 16 21 C 0.06 0.30 10.39 59.85 0.62 0.93 16 22 C 0.36 2.92 11.45 -90.68 -1.04 1.88 16 23 N -0.51 -6.34 4.79 -10.82 -0.05 -6.39 16 24 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 25 H 0.09 1.01 8.06 -52.48 -0.42 0.58 16 26 H 0.10 1.41 7.55 -52.48 -0.40 1.01 16 27 H 0.08 1.34 7.67 -51.93 -0.40 0.94 16 28 H 0.11 1.67 5.25 -52.00 -0.27 1.40 16 29 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.17 2.91 7.70 -52.49 -0.40 2.51 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.65 7.44 -51.93 -0.39 0.26 16 35 H 0.09 0.15 8.00 -51.93 -0.42 -0.26 16 36 H 0.21 0.54 8.01 -52.49 -0.42 0.12 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -35.96 315.97 -6.43 -42.40 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.30 Total: -1.77 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -1.91 Total: 10.18 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.13 Total: -50.05 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.17 Total: -22.27 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.96 -6.43 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119258173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.241 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds