Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00275 * 2 1 4 4 N 1.46500 * 109.47664 * 124.99454 * 3 2 1 5 5 C 1.46500 * 120.00264 * 262.62060 * 4 3 2 6 6 C 1.50694 * 109.46908 * 269.99965 * 5 4 3 7 7 H 1.08003 * 120.00489 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99969 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99460 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47260 * 89.99563 * 10 8 6 12 12 H 1.48502 * 109.46639 * 209.99945 * 10 8 6 13 13 H 1.48495 * 109.47112 * 329.99658 * 10 8 6 14 14 C 1.34770 * 119.99739 * 82.61651 * 4 3 2 15 15 O 1.21466 * 120.00036 * 183.14449 * 14 4 3 16 16 C 1.48570 * 120.00168 * 3.14526 * 14 4 3 17 17 C 1.37926 * 120.20679 * 173.51327 * 16 14 4 18 18 C 1.41608 * 118.32524 * 180.02562 * 17 16 14 19 19 O 1.21903 * 120.71476 * 179.97438 * 18 17 16 20 20 N 1.34985 * 118.57477 * 359.97438 * 18 17 16 21 21 C 1.46499 * 119.89309 * 180.02562 * 20 18 17 22 22 C 1.34773 * 120.21538 * 0.27778 * 20 18 17 23 23 N 1.30435 * 121.82224 * 359.42815 * 22 20 18 24 24 H 1.07999 * 119.99949 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00322 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99648 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46605 * 4.99534 * 3 2 1 28 28 H 1.09001 * 109.47263 * 245.00261 * 3 2 1 29 29 H 1.09001 * 109.47068 * 29.99552 * 5 4 3 30 30 H 1.08993 * 109.46987 * 149.99500 * 5 4 3 31 31 H 0.97003 * 119.99625 * 180.02562 * 9 8 6 32 32 H 1.07996 * 120.83721 * 359.97438 * 17 16 14 33 33 H 1.09006 * 109.47077 * 90.00529 * 21 20 18 34 34 H 1.09002 * 109.47446 * 330.00333 * 21 20 18 35 35 H 1.08993 * 109.47620 * 210.00196 * 21 20 18 36 36 H 1.07999 * 119.09053 * 179.69984 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6161 2.0094 2.3743 6 6 3.0470 3.4520 2.3109 7 1 3.5521 3.8267 1.4328 8 6 2.7975 4.2935 3.3743 9 7 2.1829 3.8371 4.4437 10 14 3.3323 6.0816 3.2960 11 1 2.2392 6.9001 2.7127 12 1 3.6375 6.5673 4.6658 13 1 4.5452 6.1987 2.4475 14 6 4.1968 0.7334 1.0290 15 8 4.9450 0.7061 1.9855 16 6 4.6081 0.1069 -0.2539 17 6 5.8864 -0.3882 -0.4060 18 6 6.2359 -0.9766 -1.6457 19 8 7.3538 -1.4275 -1.8277 20 7 5.3048 -1.0275 -2.6216 21 6 5.6351 -1.6303 -3.9153 22 6 4.0737 -0.5208 -2.4115 23 7 3.7372 0.0188 -1.2726 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.5348 1.9585 2.5018 30 1 3.1047 1.5209 3.2173 31 1 2.0070 4.4291 5.1917 32 1 6.6029 -0.3279 0.3998 33 1 5.4037 -2.6952 -3.8895 34 1 6.6972 -1.4941 -4.1191 35 1 5.0502 -1.1504 -4.6998 36 1 3.3442 -0.5668 -3.2065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119258173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = -3.139140 kcal Electronic energy + Delta-G solvation = -21418.435652 eV Core-core repulsion = 18097.140844 eV Total energy + Delta-G solvation = -3321.294808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.90933 -40.80149 -38.75491 -37.33379 -36.32937 -35.02987 -33.64286 -32.17871 -30.19202 -28.73121 -26.93759 -26.03871 -25.46059 -24.10355 -21.42883 -20.57104 -19.47721 -18.64713 -18.52078 -18.08662 -17.48651 -17.22735 -16.80665 -16.33962 -16.20871 -15.65813 -15.28189 -14.97929 -14.43742 -14.38699 -14.30273 -14.01398 -13.83006 -13.41354 -13.32961 -12.99737 -12.86637 -12.57986 -12.24500 -12.09835 -11.78735 -11.65476 -11.40477 -11.25333 -10.64375 -10.63626 -10.07248 -9.76153 -9.43386 -8.23062 -6.38160 -0.81693 0.56324 1.37225 1.40479 1.40969 1.46944 1.51260 1.70504 2.15655 2.39364 2.61125 2.93411 3.07143 3.29963 3.66005 3.91405 4.13465 4.24577 4.39935 4.43142 4.52204 4.55089 4.73761 4.86987 4.96623 5.04995 5.16987 5.21631 5.30525 5.48607 5.52353 5.75901 5.87958 6.02873 6.09664 6.48534 6.57856 6.66818 6.70273 7.14863 7.34492 8.84491 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.005083 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.958072 B = 5507.615609 C = 6232.342653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.127 3.873 4 N -0.570 5.570 5 C 0.260 3.740 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.540 3.460 15 O -0.581 6.581 16 C 0.157 3.843 17 C -0.249 4.249 18 C 0.521 3.479 19 O -0.570 6.570 20 N -0.514 5.514 21 C 0.050 3.950 22 C 0.394 3.606 23 N -0.528 5.528 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.029 0.971 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 -10.090 -22.398 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C 0.006 3.994 4 N -0.298 5.298 5 C 0.139 3.861 6 C -0.584 4.584 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.206 1.206 13 H -0.199 1.199 14 C 0.326 3.674 15 O -0.461 6.461 16 C 0.034 3.966 17 C -0.276 4.276 18 C 0.320 3.680 19 O -0.451 6.451 20 N -0.230 5.230 21 C -0.090 4.090 22 C 0.113 3.887 23 N -0.252 5.252 24 H 0.114 0.886 25 H 0.131 0.869 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.154 0.846 29 H 0.047 0.953 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.162 0.838 36 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -2.730 -9.993 -21.588 23.945 hybrid contribution 1.272 0.594 0.970 1.706 sum -1.458 -9.398 -20.618 22.706 Atomic orbital electron populations 1.23945 0.95376 1.02472 1.00398 1.23013 0.95842 0.97764 0.99905 1.21392 0.92166 0.95745 0.90110 1.48178 1.14732 1.50280 1.16608 1.18877 0.94912 0.91074 0.81254 1.21657 1.38762 0.95369 1.02599 0.92782 1.25845 0.94819 1.03717 0.94485 1.70055 1.42259 1.37716 1.06534 0.85397 0.78867 0.78899 0.77537 1.18522 1.20625 1.19917 1.18518 0.82279 0.79568 0.86989 1.90730 1.53756 1.61596 1.40042 1.21113 0.90647 0.92256 0.92540 1.23221 0.98435 1.06506 0.99486 1.17011 0.85129 0.81040 0.84804 1.90903 1.21449 1.50720 1.82000 1.46765 1.12372 1.47332 1.16498 1.22642 1.04815 1.00810 0.80737 1.26509 0.84631 0.81801 0.95804 1.68876 1.32334 1.23720 1.00312 0.88568 0.86900 0.87986 0.91439 0.84620 0.95306 0.98198 0.92298 0.84338 0.88441 0.90495 0.83820 0.70491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 14.32 67.78 0.97 -3.29 16 2 C -0.15 -3.93 8.69 25.65 0.22 -3.70 16 3 C 0.13 4.14 5.45 85.63 0.47 4.61 16 4 N -0.57 -25.44 2.46 -833.13 -2.05 -27.50 16 5 C 0.26 14.34 5.15 85.63 0.44 14.78 16 6 C -0.55 -31.81 9.39 25.60 0.24 -31.57 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.62 5.46 84.66 0.46 1.08 16 9 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 10 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 14 C 0.54 24.50 7.60 87.00 0.66 25.16 16 15 O -0.58 -32.01 15.95 -3.61 -0.06 -32.07 16 16 C 0.16 5.25 6.63 41.45 0.27 5.53 16 17 C -0.25 -8.45 9.67 23.03 0.22 -8.23 16 18 C 0.52 14.68 7.47 85.04 0.63 15.31 16 19 O -0.57 -19.68 16.76 -5.00 -0.08 -19.77 16 20 N -0.51 -7.81 2.97 -678.25 -2.01 -9.83 16 21 C 0.05 0.28 10.39 127.77 1.33 1.61 16 22 C 0.39 4.35 11.45 180.37 2.07 6.41 16 23 N -0.53 -11.75 4.79 -188.15 -0.90 -12.65 16 24 H 0.10 2.24 7.84 -2.91 -0.02 2.21 16 25 H 0.11 2.12 8.06 -2.91 -0.02 2.09 16 26 H 0.10 2.70 7.55 -2.91 -0.02 2.68 16 27 H 0.07 2.30 7.67 -2.38 -0.02 2.29 16 28 H 0.14 3.75 5.25 -2.53 -0.01 3.74 16 29 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 30 H 0.00 -0.01 7.38 -2.39 -0.02 -0.02 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.14 5.40 7.70 -2.91 -0.02 5.37 16 33 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.08 0.82 7.44 -2.39 -0.02 0.80 16 35 H 0.14 -0.61 8.00 -2.39 -0.02 -0.63 16 36 H 0.28 -1.02 8.01 -2.91 -0.02 -1.04 16 Total: -1.00 -86.97 315.97 6.28 -80.69 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.09 Total: 2.28 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 7.99 Total: 27.70 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -4.68 Total: -105.96 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.14 Total: -51.84 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -86.97 6.28 -80.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119258173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.552 kcal (2) G-P(sol) polarization free energy of solvation -86.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds