Wall clock time and date at job start Mon Mar 30 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46876 * 2 1 4 4 C 1.46900 * 110.99782 * 287.93245 * 3 2 1 5 5 C 1.50702 * 109.47315 * 160.36855 * 4 3 2 6 6 H 1.08008 * 119.99705 * 4.90462 * 5 4 3 7 7 C 1.37877 * 120.00549 * 184.90169 * 5 4 3 8 8 N 1.31509 * 120.00466 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99770 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46917 * 89.99778 * 9 7 5 11 11 H 1.48494 * 109.47314 * 209.99827 * 9 7 5 12 12 H 1.48501 * 109.47009 * 330.00169 * 9 7 5 13 13 C 1.46900 * 110.99805 * 163.98256 * 3 2 1 14 14 C 1.50696 * 109.46936 * 293.94948 * 13 3 2 15 15 N 1.30499 * 125.65126 * 274.69148 * 14 13 3 16 16 C 1.34130 * 109.25849 * 180.26769 * 15 14 13 17 17 C 1.34665 * 108.02002 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.59059 * 179.97438 * 17 16 15 19 19 F 1.39895 * 109.47325 * 270.04309 * 18 17 16 20 20 F 1.39901 * 109.47289 * 30.04454 * 18 17 16 21 21 F 1.39904 * 109.47065 * 150.04255 * 18 17 16 22 22 N 1.35042 * 125.65007 * 95.00175 * 14 13 3 23 23 H 0.97000 * 126.39657 * 359.75286 * 22 14 13 24 24 H 1.09003 * 109.46874 * 179.27610 * 1 2 3 25 25 H 1.08996 * 109.47073 * 299.28025 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.27666 * 1 2 3 27 27 H 1.08996 * 109.47065 * 239.99800 * 2 1 3 28 28 H 1.08999 * 109.47031 * 119.99798 * 2 1 3 29 29 H 1.09003 * 109.47161 * 280.36506 * 4 3 2 30 30 H 1.09000 * 109.47202 * 40.36974 * 4 3 2 31 31 H 0.96991 * 120.00306 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46954 * 173.95436 * 13 3 2 33 33 H 1.08997 * 109.47538 * 53.95222 * 13 3 2 34 34 H 1.08005 * 125.99064 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7970 2.0220 -1.3048 5 6 1.8482 3.5200 -1.1479 6 1 2.1064 3.9544 -0.1933 7 6 1.5657 4.3360 -2.2227 8 7 1.6109 5.6431 -2.0859 9 14 1.1200 3.5846 -3.8740 10 1 -0.3507 3.3934 -3.9499 11 1 1.5582 4.4917 -4.9650 12 1 1.7980 2.2715 -4.0195 13 6 3.4379 1.4420 0.3784 14 6 3.5929 1.0070 1.8129 15 7 3.4607 1.7755 2.8593 16 6 3.6739 1.0527 3.9688 17 6 3.9480 -0.2119 3.5959 18 6 4.2535 -1.3714 4.5087 19 9 5.6324 -1.4349 4.7366 20 9 3.5874 -1.1947 5.7262 21 9 3.8244 -2.5613 3.9108 22 7 3.8973 -0.2414 2.2283 23 1 4.0512 -1.0145 1.6631 24 1 -0.3633 -1.0276 -0.0130 25 1 -0.3633 0.5026 0.8963 26 1 -0.3633 0.5250 -0.8834 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.5719 1.7031 -2.0019 30 1 0.8197 1.7303 -1.6895 31 1 1.4118 6.2171 -2.8419 32 1 3.8030 2.4630 0.2669 33 1 4.0131 0.7780 -0.2668 34 1 3.6321 1.4202 4.9836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137016494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:29 Heat of formation + Delta-G solvation = -105.405813 kcal Electronic energy + Delta-G solvation = -21686.386299 eV Core-core repulsion = 17818.800135 eV Total energy + Delta-G solvation = -3867.586164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.28037 -48.81730 -48.76002 -43.43795 -38.74690 -34.70405 -33.94873 -32.89192 -31.67231 -29.86215 -27.41423 -25.62149 -24.17140 -22.64105 -22.39824 -21.41966 -20.06484 -19.64986 -19.28964 -18.94569 -17.55459 -17.10908 -16.46284 -16.15296 -15.69690 -15.59969 -15.40771 -15.26047 -15.20021 -15.05008 -14.91301 -14.89345 -14.51461 -14.37528 -13.95257 -13.50327 -13.31238 -12.96313 -12.61454 -12.55365 -12.22629 -11.89691 -11.71141 -11.45788 -11.33003 -11.26687 -10.72190 -9.92460 -9.07118 -8.21638 -6.25133 0.39006 1.13805 1.39248 1.40241 1.50326 1.77448 1.89124 2.38811 2.60802 2.98236 3.09785 3.21336 3.25431 3.33912 3.87395 4.07011 4.11384 4.26617 4.43925 4.58272 4.63539 4.66805 4.85854 4.90380 5.01273 5.12399 5.32097 5.34416 5.61086 5.96510 6.05442 6.28620 6.63442 6.81821 6.83677 7.37715 8.95503 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033049 B = 0.004136 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.029453 B = 6768.708147 C = 7155.527817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.541 5.541 4 C 0.175 3.825 5 C -0.513 4.513 6 H 0.035 0.965 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.243 1.243 13 C 0.142 3.858 14 C 0.271 3.729 15 N -0.509 5.509 16 C 0.048 3.952 17 C -0.138 4.138 18 C 0.565 3.435 19 F -0.171 7.171 20 F -0.161 7.161 21 F -0.176 7.176 22 N -0.531 5.531 23 H 0.437 0.563 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.001 0.999 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -19.548 9.079 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.267 5.267 4 C 0.049 3.951 5 C -0.552 4.552 6 H 0.053 0.947 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.167 1.167 13 C 0.012 3.988 14 C 0.006 3.994 15 N -0.228 5.228 16 C -0.105 4.105 17 C -0.254 4.254 18 C 0.509 3.491 19 F -0.152 7.152 20 F -0.142 7.142 21 F -0.157 7.157 22 N -0.136 5.136 23 H 0.279 0.721 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.019 0.981 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.854 -18.335 9.347 21.144 hybrid contribution 0.470 -1.222 -1.216 1.787 sum 5.324 -19.557 8.131 21.839 Atomic orbital electron populations 1.21740 0.94658 1.01958 1.01658 1.22222 0.97069 0.88477 1.00530 1.61741 1.15868 1.16993 1.32054 1.19970 0.96193 0.93125 0.85833 1.21285 1.45971 0.90959 0.96972 0.94701 1.25851 0.95142 0.94955 1.03036 1.70067 1.51384 1.04814 1.32866 0.85742 0.79342 0.79389 0.78589 1.19331 1.21177 1.16677 1.20386 0.90598 1.02730 0.85051 1.23363 0.98672 0.80207 0.97155 1.70521 1.20655 1.33586 0.98073 1.22792 0.99763 0.88324 0.99581 1.20927 1.21744 0.97571 0.85111 1.16729 0.74408 0.79590 0.78337 1.93260 1.30713 1.96398 1.94864 1.93239 1.80527 1.95219 1.45263 1.93217 1.89737 1.49311 1.83478 1.42930 1.53066 1.12122 1.05468 0.72116 0.89990 0.93621 0.93505 0.93527 0.91140 0.98109 0.94411 0.92591 0.89225 0.90639 0.78100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.99 71.98 0.72 -3.34 16 2 C 0.04 1.29 5.55 86.30 0.48 1.77 16 3 N -0.54 -20.62 4.37 -905.36 -3.96 -24.58 16 4 C 0.18 7.77 3.65 85.56 0.31 8.08 16 5 C -0.51 -28.94 9.17 25.60 0.23 -28.70 16 6 H 0.03 2.26 7.90 -2.91 -0.02 2.23 16 7 C 0.01 0.41 5.47 84.66 0.46 0.87 16 8 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 9 Si 0.95 42.40 27.38 68.60 1.88 44.28 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.24 -9.81 6.69 99.48 0.67 -9.14 16 13 C 0.14 4.81 5.42 85.56 0.46 5.28 16 14 C 0.27 8.36 6.68 138.13 0.92 9.28 16 15 N -0.51 -17.84 11.25 -188.13 -2.12 -19.95 16 16 C 0.05 1.28 11.48 83.52 0.96 2.24 16 17 C -0.14 -3.14 6.56 40.95 0.27 -2.87 16 18 C 0.57 10.71 3.54 71.24 0.25 10.97 16 19 F -0.17 -3.29 17.30 44.97 0.78 -2.51 16 20 F -0.16 -3.07 17.04 44.97 0.77 -2.31 16 21 F -0.18 -3.20 17.28 44.97 0.78 -2.42 16 22 N -0.53 -11.98 5.30 -174.61 -0.93 -12.91 16 23 H 0.44 6.94 8.94 -92.71 -0.83 6.12 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.46 6.52 -2.39 -0.02 1.45 16 27 H 0.05 1.18 8.05 -2.39 -0.02 1.16 16 28 H 0.07 1.77 6.24 -2.39 -0.01 1.76 16 29 H 0.00 0.05 7.40 -2.39 -0.02 0.04 16 30 H 0.04 1.64 5.40 -2.39 -0.01 1.63 16 31 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.09 3.69 7.32 -2.39 -0.02 3.67 16 33 H 0.08 2.02 8.12 -2.39 -0.02 2.01 16 34 H 0.20 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -68.65 300.82 2.85 -65.80 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.28 Total: 10.00 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.07 Total: 3.56 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -6.70 Total: -116.40 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 2.32 Total: -7.24 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -68.65 2.85 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137016494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.607 kcal (2) G-P(sol) polarization free energy of solvation -68.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds