Wall clock time and date at job start Mon Mar 30 2020 02:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99998 * 2 1 4 4 C 1.53000 * 109.46898 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47471 * 63.56919 * 4 3 2 6 6 C 1.36538 * 120.00221 * 266.29125 * 5 4 3 7 7 H 1.07996 * 120.00147 * 142.07132 * 6 5 4 8 8 C 1.39264 * 119.99644 * 322.07005 * 6 5 4 9 9 N 1.31239 * 119.99503 * 161.22049 * 8 6 5 10 10 Si 1.86790 * 120.00231 * 341.22326 * 8 6 5 11 11 H 1.48499 * 109.47296 * 95.22274 * 10 8 6 12 12 H 1.48497 * 109.47317 * 215.22289 * 10 8 6 13 13 H 1.48499 * 109.47282 * 335.22534 * 10 8 6 14 14 C 1.34775 * 119.99955 * 86.28487 * 5 4 3 15 15 O 1.21720 * 119.99935 * 0.02562 * 14 5 4 16 16 C 1.46586 * 120.00278 * 180.27758 * 14 5 4 17 17 C 1.34749 * 120.00591 * 179.73064 * 16 14 5 18 18 C 1.47393 * 120.00444 * 180.02562 * 17 16 14 19 19 C 1.40064 * 120.59083 * 179.97438 * 18 17 16 20 20 C 1.38438 * 118.24270 * 179.97438 * 19 18 17 21 21 N 1.32371 * 119.19595 * 0.02562 * 20 19 18 22 22 C 1.31882 * 121.13289 * 359.97438 * 21 20 19 23 23 N 1.31569 * 121.94532 * 359.73915 * 22 21 20 24 24 H 1.09010 * 109.46623 * 299.99887 * 1 2 3 25 25 H 1.09001 * 109.47274 * 59.99712 * 1 2 3 26 26 H 1.08994 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46759 * 60.00415 * 3 2 1 28 28 H 1.09005 * 109.46962 * 300.00165 * 3 2 1 29 29 H 1.09007 * 109.46980 * 303.56596 * 4 3 2 30 30 H 1.09003 * 109.46634 * 183.57077 * 4 3 2 31 31 H 0.97004 * 119.99007 * 180.02562 * 9 8 6 32 32 H 1.08007 * 119.99915 * 359.72444 * 16 14 5 33 33 H 1.08007 * 119.99494 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.87658 * 359.95399 * 19 18 17 35 35 H 1.08000 * 120.40108 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.02997 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9733 0.5334 -1.2377 6 6 4.1669 -0.8178 -1.2664 7 1 3.8890 -1.3847 -2.1426 8 6 4.7226 -1.4651 -0.1656 9 7 4.5781 -2.7619 -0.0251 10 14 5.6736 -0.4875 1.1107 11 1 4.7697 -0.1265 2.2322 12 1 6.7983 -1.3088 1.6262 13 1 6.2090 0.7500 0.4885 14 6 4.1849 1.2682 -2.3476 15 8 4.0127 2.4728 -2.3220 16 6 4.6171 0.6158 -3.5871 17 6 4.8234 1.3497 -4.6983 18 6 5.2575 0.6936 -5.9447 19 6 5.4750 1.4444 -7.1070 20 6 5.8825 0.7786 -8.2503 21 7 6.0510 -0.5337 -8.2079 22 6 5.8380 -1.2130 -7.0977 23 7 5.4554 -0.6252 -5.9845 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8532 0.5893 0.8555 30 1 3.9787 2.1785 0.0634 31 1 4.9649 -3.2126 0.7418 32 1 4.7703 -0.4531 -3.6098 33 1 4.6699 2.4185 -4.6757 34 1 5.3284 2.5144 -7.1112 35 1 6.0607 1.3232 -9.1657 36 1 5.9855 -2.2829 -7.1014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141803185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:36 Heat of formation + Delta-G solvation = 7.247100 kcal Electronic energy + Delta-G solvation = -21003.479195 eV Core-core repulsion = 17682.634768 eV Total energy + Delta-G solvation = -3320.844427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69064 -39.05687 -37.12610 -35.09853 -34.43298 -32.50998 -32.09163 -30.95538 -29.39397 -26.00314 -25.38678 -24.55253 -24.10815 -22.76879 -20.76983 -18.85680 -17.66141 -17.10061 -16.44414 -16.21020 -15.83657 -15.42791 -15.33719 -14.73470 -14.63353 -14.54572 -14.08779 -13.69016 -13.45753 -13.13126 -12.70240 -12.56928 -11.98106 -11.72292 -11.69633 -11.33997 -11.05825 -10.92279 -10.81358 -10.68507 -10.14727 -9.95506 -9.90556 -9.30744 -9.13257 -9.10981 -8.70220 -8.50099 -7.88249 -6.51485 -4.03984 0.65187 1.11178 2.33706 3.03174 3.18926 3.23328 3.94144 4.05179 4.10848 4.23921 4.26653 4.30170 4.39725 4.67529 4.99856 5.12456 5.21252 5.54948 5.59547 5.61255 5.70738 5.77202 5.82771 5.89216 5.91421 6.01217 6.09705 6.24741 6.37046 6.55025 6.73591 6.98686 7.19199 7.25454 7.74447 8.00248 8.20135 8.24143 8.88069 9.25266 9.57610 10.58219 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.004984 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.110867 B = 5616.601470 C = 6129.969958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.055 3.945 4 C 0.097 3.903 5 N -0.428 5.428 6 C -0.329 4.329 7 H 0.110 0.890 8 C 0.073 3.927 9 N -0.844 5.844 10 Si 0.876 3.124 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.261 1.261 14 C 0.479 3.521 15 O -0.608 6.608 16 C -0.067 4.067 17 C -0.129 4.129 18 C 0.220 3.780 19 C -0.225 4.225 20 C 0.144 3.856 21 N -0.539 5.539 22 C 0.299 3.701 23 N -0.513 5.513 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.277 0.723 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 5.805 -6.746 9.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.023 4.023 4 C -0.026 4.026 5 N -0.144 5.144 6 C -0.456 4.456 7 H 0.127 0.873 8 C -0.137 4.137 9 N -0.478 5.478 10 Si 0.703 3.297 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.185 1.185 14 C 0.272 3.728 15 O -0.496 6.496 16 C -0.091 4.091 17 C -0.150 4.150 18 C 0.078 3.922 19 C -0.247 4.247 20 C -0.021 4.021 21 N -0.254 5.254 22 C 0.010 3.990 23 N -0.228 5.228 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.181 0.819 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.138 5.012 -6.577 8.347 hybrid contribution 0.074 1.291 0.811 1.526 sum -1.064 6.302 -5.766 8.608 Atomic orbital electron populations 1.22668 0.82861 1.02175 0.98805 1.88207 1.17835 1.26586 1.95046 1.22837 0.94580 0.85310 0.99568 1.21822 0.92596 0.98821 0.89386 1.43551 1.54801 1.07919 1.08170 1.19086 1.41421 0.79882 1.05247 0.87284 1.25355 0.95662 0.95292 0.97341 1.69655 1.39785 1.09045 1.29286 0.86959 0.80062 0.80971 0.81661 1.19929 1.21261 1.18513 1.18317 0.82914 0.86097 0.85486 1.90651 1.58695 1.14294 1.85979 1.23600 0.91854 1.02022 0.91592 1.21854 1.03710 0.99635 0.89842 1.20577 0.89074 0.89012 0.93583 1.22953 1.04420 1.02742 0.94627 1.23075 0.90898 0.90339 0.97779 1.68357 1.17760 1.09058 1.30216 1.24931 0.90045 1.01005 0.83011 1.68648 1.13807 1.10813 1.29512 0.95113 0.94843 0.90012 0.93671 0.93052 0.90517 0.89530 0.91297 0.83440 0.84213 0.83550 0.81867 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.58 10.29 -35.23 -0.36 -7.94 16 3 C 0.05 1.07 6.27 37.16 0.23 1.30 16 4 C 0.10 2.12 4.41 -4.04 -0.02 2.10 16 5 N -0.43 -10.28 2.13 -116.35 -0.25 -10.53 16 6 C -0.33 -8.51 8.56 -15.08 -0.13 -8.64 16 7 H 0.11 2.99 6.93 -52.49 -0.36 2.62 16 8 C 0.07 1.90 5.34 -17.42 -0.09 1.81 16 9 N -0.84 -23.02 13.95 55.51 0.77 -22.25 16 10 Si 0.88 20.17 24.81 -169.99 -4.22 15.95 16 11 H -0.27 -6.02 6.71 56.52 0.38 -5.64 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.26 -6.04 7.10 56.52 0.40 -5.64 16 14 C 0.48 11.18 7.55 -12.89 -0.10 11.09 16 15 O -0.61 -14.77 15.88 5.17 0.08 -14.68 16 16 C -0.07 -1.40 8.83 -37.45 -0.33 -1.73 16 17 C -0.13 -2.29 9.49 -37.09 -0.35 -2.64 16 18 C 0.22 3.55 6.74 -82.77 -0.56 3.00 16 19 C -0.23 -2.83 9.95 -38.82 -0.39 -3.22 16 20 C 0.14 1.68 11.30 -17.25 -0.19 1.48 16 21 N -0.54 -7.39 10.42 -14.64 -0.15 -7.54 16 22 C 0.30 4.29 12.27 -92.27 -1.13 3.16 16 23 N -0.51 -8.69 9.50 -11.25 -0.11 -8.80 16 24 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.73 3.22 -51.92 -0.17 1.56 16 30 H 0.09 1.79 7.53 -51.93 -0.39 1.40 16 31 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 32 H 0.15 3.21 5.92 -52.48 -0.31 2.90 16 33 H 0.14 2.35 7.52 -52.48 -0.39 1.96 16 34 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 35 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.19 2.20 8.06 -52.48 -0.42 1.77 16 LS Contribution 313.93 15.07 4.73 4.73 Total: -1.00 -31.01 313.93 -5.61 -36.63 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.17 Total: 5.09 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.95 Total: 9.33 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.27 Total: -49.11 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.28 Total: -22.62 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.22 Total: 15.95 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.01 -5.61 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141803185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.874 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds