Wall clock time and date at job start Mon Mar 30 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34686 * 116.99947 * 2 1 4 4 O 1.21434 * 119.99863 * 0.02562 * 3 2 1 5 5 C 1.48048 * 120.00018 * 179.97438 * 3 2 1 6 6 C 1.39480 * 120.10005 * 180.02562 * 5 3 2 7 7 N 1.32079 * 119.86596 * 180.02562 * 6 5 3 8 8 C 1.32139 * 120.07544 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.89717 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47267 * 275.00423 * 9 8 7 11 11 C 1.47961 * 111.00005 * 189.99947 * 10 9 8 12 12 C 1.53934 * 86.17939 * 137.58072 * 11 10 9 13 13 C 1.50703 * 113.73399 * 221.81705 * 12 11 10 14 14 H 1.07999 * 119.99920 * 358.09577 * 13 12 11 15 15 C 1.37877 * 119.99669 * 178.10223 * 13 12 11 16 16 N 1.31510 * 120.00506 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99624 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47293 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47387 * 119.99775 * 17 15 13 20 20 H 1.48498 * 109.47096 * 240.00236 * 17 15 13 21 21 C 1.48296 * 111.00409 * 289.35248 * 10 9 8 22 22 C 1.38753 * 120.20284 * 0.26143 * 8 7 6 23 23 N 1.31783 * 120.12701 * 359.46923 * 22 8 7 24 24 H 1.09004 * 109.47178 * 59.99580 * 1 2 3 25 25 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46826 * 299.99271 * 1 2 3 27 27 H 1.07991 * 120.06174 * 0.04538 * 6 5 3 28 28 H 1.08997 * 109.47111 * 155.00189 * 9 8 7 29 29 H 1.09007 * 109.47191 * 35.00352 * 9 8 7 30 30 H 1.09007 * 113.75652 * 23.26342 * 11 10 9 31 31 H 1.08993 * 113.76177 * 251.90248 * 11 10 9 32 32 H 1.09002 * 113.73279 * 90.64057 * 12 11 10 33 33 H 0.96995 * 120.00309 * 180.02562 * 16 15 13 34 34 H 1.09001 * 113.86054 * 108.14174 * 21 10 9 35 35 H 1.09000 * 113.76062 * 336.68481 * 21 10 9 36 36 H 1.07993 * 119.93221 * 179.74786 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4021 2.2185 0.0005 5 6 3.5419 1.2776 0.0006 6 6 4.1773 2.5192 0.0011 7 7 5.4966 2.5830 0.0011 8 6 6.2132 1.4728 0.0011 9 6 7.7182 1.5502 0.0005 10 7 8.2005 1.6957 -1.3794 11 6 9.6700 1.5361 -1.4471 12 6 9.4171 0.6958 -2.7118 13 6 10.2709 -0.5431 -2.7976 14 1 10.9992 -0.7514 -2.0279 15 6 10.1222 -1.4106 -3.8589 16 7 9.2357 -1.1568 -4.7966 17 14 11.1810 -2.9459 -3.9656 18 1 12.0944 -2.9996 -2.7960 19 1 10.3100 -4.1486 -3.9696 20 1 11.9807 -2.9097 -5.2163 21 6 8.0092 0.4399 -2.1446 22 6 5.5842 0.2360 -0.0044 23 7 4.2684 0.1631 0.0010 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.5917 3.4266 0.0019 28 1 8.1291 0.6389 0.4349 29 1 8.0381 2.4098 0.5897 30 1 10.0884 0.9661 -0.6175 31 1 10.2045 2.4666 -1.6377 32 1 9.4197 1.2781 -3.6332 33 1 9.1309 -1.7672 -5.5430 34 1 7.2178 0.4952 -2.8921 35 1 7.9430 -0.4500 -1.5186 36 1 6.1742 -0.6685 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141820007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:56 Heat of formation + Delta-G solvation = -17.003944 kcal Electronic energy + Delta-G solvation = -20628.260148 eV Core-core repulsion = 17306.364117 eV Total energy + Delta-G solvation = -3321.896031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.62127 -41.29319 -40.29306 -37.71892 -35.86389 -34.82700 -33.75058 -31.05541 -28.99535 -27.83978 -26.82332 -25.85782 -25.68941 -23.56334 -22.45478 -20.43531 -19.68197 -18.87092 -18.66929 -17.95251 -17.65969 -17.30059 -16.79190 -16.28147 -16.09494 -16.02432 -15.41942 -15.18036 -14.60973 -14.30473 -13.93101 -13.82898 -13.39372 -13.10220 -13.06806 -12.89808 -12.83613 -12.53374 -12.45602 -12.21527 -12.13840 -11.89747 -11.63839 -11.18690 -10.96919 -10.55907 -10.45846 -10.37555 -9.59752 -8.12266 -6.23702 -1.00314 -0.17254 1.08750 1.35680 1.44192 1.47351 1.57706 2.40246 2.46039 2.75171 2.82556 3.12281 3.18557 3.30465 3.60182 3.73130 3.85945 4.23710 4.25600 4.30701 4.31524 4.45859 4.49936 4.58154 4.67911 4.77393 4.86754 4.99936 5.00518 5.06029 5.24885 5.45943 5.67267 5.84992 5.87560 6.29586 6.31746 6.36631 6.51786 6.86928 7.45766 8.97202 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.003804 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.743356 B = 7358.786566 C = 8162.137084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.536 3.464 4 O -0.508 6.508 5 C 0.013 3.987 6 C 0.123 3.877 7 N -0.439 5.439 8 C 0.131 3.869 9 C 0.067 3.933 10 N -0.487 5.487 11 C 0.019 3.981 12 C 0.018 3.982 13 C -0.526 4.526 14 H 0.066 0.934 15 C 0.014 3.986 16 N -0.924 5.924 17 Si 0.955 3.045 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.286 1.286 21 C 0.022 3.978 22 C 0.057 3.943 23 N -0.399 5.399 24 H 0.068 0.932 25 H 0.133 0.867 26 H 0.073 0.927 27 H 0.203 0.797 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 2.211 12.627 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C 0.379 3.621 4 O -0.397 6.397 5 C -0.126 4.126 6 C -0.036 4.036 7 N -0.154 5.154 8 C -0.011 4.011 9 C -0.062 4.062 10 N -0.210 5.210 11 C -0.109 4.109 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.084 0.916 15 C -0.185 4.185 16 N -0.563 5.563 17 Si 0.780 3.220 18 H -0.184 1.184 19 H -0.208 1.208 20 H -0.212 1.212 21 C -0.106 4.106 22 C -0.107 4.107 23 N -0.116 5.116 24 H 0.087 0.913 25 H 0.151 0.849 26 H 0.091 0.909 27 H 0.220 0.780 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.742 3.065 12.280 17.960 hybrid contribution 0.402 -1.451 -0.303 1.536 sum -12.340 1.614 11.977 17.273 Atomic orbital electron populations 1.23725 0.73559 1.06194 1.03228 1.86672 1.25693 1.30926 1.82784 1.20445 0.87109 0.82153 0.72414 1.90842 1.65877 1.36429 1.46523 1.21219 0.92549 0.92101 1.06700 1.24145 0.90768 0.98306 0.90379 1.68559 1.06145 1.31087 1.09576 1.22768 0.98607 0.89642 0.90039 1.21677 0.86586 1.04308 0.93649 1.68687 1.09525 1.33430 1.09385 1.23988 0.88169 0.99675 0.99036 1.20281 0.92545 0.94297 0.92958 1.21477 1.20559 1.06525 1.07903 0.91632 1.25806 0.96330 1.01167 0.95173 1.70105 1.35829 1.38235 1.12092 0.85555 0.78848 0.79379 0.78168 1.18397 1.20839 1.21180 1.23919 1.00042 0.90292 0.96397 1.24097 0.90245 0.99866 0.96515 1.68433 1.07558 1.30325 1.05297 0.91335 0.84929 0.90874 0.78021 0.89731 0.87331 0.90283 0.90076 0.96239 0.93054 0.94323 0.91507 0.78755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -8.29 10.40 -55.95 -0.58 -8.87 16 3 C 0.54 14.14 7.95 70.43 0.56 14.70 16 4 O -0.51 -14.00 16.14 20.05 0.32 -13.68 16 5 C 0.01 0.37 6.75 41.87 0.28 0.65 16 6 C 0.12 3.26 10.77 84.96 0.92 4.17 16 7 N -0.44 -12.92 10.41 -182.17 -1.90 -14.82 16 8 C 0.13 3.79 5.96 42.64 0.25 4.05 16 9 C 0.07 1.87 5.16 85.56 0.44 2.31 16 10 N -0.49 -17.78 6.26 -911.59 -5.71 -23.48 16 11 C 0.02 0.72 7.53 86.41 0.65 1.37 16 12 C 0.02 0.88 3.60 -10.89 -0.04 0.84 16 13 C -0.53 -27.02 8.77 25.60 0.22 -26.79 16 14 H 0.07 3.21 7.81 -2.91 -0.02 3.19 16 15 C 0.01 0.77 5.46 84.66 0.46 1.23 16 16 N -0.92 -52.89 13.29 21.45 0.28 -52.60 16 17 Si 0.95 41.61 29.54 68.60 2.03 43.63 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 21 C 0.02 0.96 6.68 86.34 0.58 1.54 16 22 C 0.06 1.57 10.36 84.82 0.88 2.45 16 23 N -0.40 -11.74 10.28 -184.37 -1.90 -13.64 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.20 4.31 7.65 -2.92 -0.02 4.29 16 28 H 0.08 2.06 7.60 -2.39 -0.02 2.04 16 29 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.08 2.63 7.74 -2.38 -0.02 2.61 16 31 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.70 7.45 -2.39 -0.02 2.68 16 36 H 0.20 4.63 7.82 -2.91 -0.02 4.61 16 Total: -1.00 -64.29 318.55 0.05 -64.24 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.09 Total: 11.13 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.40 Total: 8.09 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -9.21 Total: -104.54 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.26 Total: -22.55 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -64.29 0.05 -64.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141820007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.237 kcal (2) G-P(sol) polarization free energy of solvation -64.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds