Wall clock time and date at job start Mon Mar 30 2020 02:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00099 * 2 1 4 4 C 1.53001 * 109.46882 * 125.00299 * 3 2 1 5 5 H 1.08993 * 109.47441 * 55.00369 * 4 3 2 6 6 N 1.46507 * 109.47081 * 295.00048 * 4 3 2 7 7 C 1.38821 * 120.00171 * 155.00148 * 6 4 3 8 8 C 1.39965 * 119.96892 * 359.97438 * 7 6 4 9 9 N 1.32126 * 120.31908 * 180.02562 * 8 7 6 10 10 C 1.31933 * 120.27042 * 359.65399 * 9 8 7 11 11 C 1.40682 * 119.93041 * 0.62509 * 10 9 8 12 12 C 1.41269 * 120.15272 * 179.68278 * 11 10 9 13 13 H 1.08001 * 120.00803 * 6.16351 * 12 11 10 14 14 C 1.40054 * 119.99933 * 186.16640 * 12 11 10 15 15 N 1.30738 * 120.00325 * 176.74440 * 14 12 11 16 16 Si 1.86797 * 119.99891 * 356.74772 * 14 12 11 17 17 H 1.48502 * 109.47307 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.46923 * 299.99731 * 16 14 12 19 19 H 1.48494 * 109.47455 * 59.99895 * 16 14 12 20 20 N 1.32230 * 119.97361 * 180.02562 * 7 6 4 21 21 C 1.50703 * 109.47010 * 175.00342 * 4 3 2 22 22 O 1.20824 * 119.99828 * 119.99644 * 21 4 3 23 23 O 1.34228 * 119.99902 * 299.99835 * 21 4 3 24 24 C 1.45195 * 117.00002 * 179.97438 * 23 21 4 25 25 H 1.08000 * 119.99832 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99775 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99832 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46973 * 5.00555 * 3 2 1 29 29 H 1.08997 * 109.47490 * 245.00476 * 3 2 1 30 30 H 0.97001 * 119.99904 * 335.00193 * 6 4 3 31 31 H 1.08005 * 119.84331 * 0.02562 * 8 7 6 32 32 H 1.08003 * 120.03595 * 180.29933 * 10 9 8 33 33 H 0.96999 * 119.99762 * 355.08421 * 15 14 12 34 34 H 1.08999 * 109.47308 * 59.99882 * 24 23 21 35 35 H 1.08999 * 109.47506 * 179.97438 * 24 23 21 36 36 H 1.08999 * 109.47277 * 300.00017 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6827 0.4573 1.1403 6 7 2.2786 1.3222 2.4362 7 6 2.8645 0.8330 3.5958 8 6 4.1777 0.3498 3.5655 9 7 4.7419 -0.1177 4.6650 10 6 4.0743 -0.1269 5.8029 11 6 2.7516 0.3506 5.8446 12 6 2.0301 0.3367 7.0591 13 1 2.5233 0.0532 7.9771 14 6 0.6751 0.6906 7.0726 15 7 -0.0088 0.6167 8.1844 16 14 -0.1551 1.2682 5.5022 17 1 -1.5802 1.5792 5.7811 18 1 0.5289 2.4868 5.0000 19 1 -0.0744 0.1972 4.4767 20 7 2.1810 0.8231 4.7277 21 6 3.8748 2.5825 1.1121 22 8 3.8444 3.3819 2.0176 23 8 4.6564 2.8073 0.0443 24 6 5.4372 4.0314 0.0449 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.3684 1.6568 2.4566 31 1 4.7326 0.3592 2.6390 32 1 4.5408 -0.5055 6.7004 33 1 0.4019 0.2498 8.9829 34 1 6.1076 4.0343 0.9044 35 1 6.0230 4.0893 -0.8725 36 1 4.7676 4.8895 0.1036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158861248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:18 Heat of formation + Delta-G solvation = -31.637675 kcal Electronic energy + Delta-G solvation = -21558.512296 eV Core-core repulsion = 18235.981699 eV Total energy + Delta-G solvation = -3322.530598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60055 -39.32441 -37.13990 -36.11561 -34.30859 -33.91282 -32.33444 -30.60193 -28.54728 -27.47338 -25.91148 -24.40021 -22.83255 -21.60422 -20.35997 -20.00232 -18.51348 -17.62478 -17.03762 -16.78561 -16.31762 -15.95014 -15.48315 -15.06387 -14.24462 -14.03255 -13.92084 -13.55731 -13.36304 -13.07168 -12.94747 -12.67315 -12.30591 -12.10778 -11.70861 -11.29198 -11.24027 -11.06705 -11.03457 -10.79255 -10.74478 -10.11507 -9.87673 -9.42778 -9.39099 -9.12677 -8.95819 -7.75828 -7.23467 -7.14742 -4.94545 2.11069 2.31960 2.41991 2.61115 2.85065 3.49341 3.57956 3.65115 3.96436 4.35165 4.53407 4.59931 4.72457 4.85877 5.04539 5.11449 5.12837 5.19426 5.40245 5.44953 5.51776 5.66317 5.78884 5.88378 5.90116 6.11628 6.35921 6.42874 6.55533 6.66498 6.72773 7.20475 7.29882 7.45284 7.74586 7.83696 8.00388 8.21043 8.47284 8.97287 9.43139 9.85936 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.006448 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.855149 B = 4341.060885 C = 5078.846081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.150 4.150 3 C -0.094 4.094 4 C 0.180 3.820 5 H 0.123 0.877 6 N -0.705 5.705 7 C 0.411 3.589 8 C -0.167 4.167 9 N -0.394 5.394 10 C -0.088 4.088 11 C 0.238 3.762 12 C -0.451 4.451 13 H 0.090 0.910 14 C 0.043 3.957 15 N -0.793 5.793 16 Si 1.155 2.845 17 H -0.332 1.332 18 H -0.285 1.285 19 H -0.287 1.287 20 N -0.592 5.592 21 C 0.434 3.566 22 O -0.482 6.482 23 O -0.363 6.363 24 C 0.035 3.965 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.403 0.597 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.286 0.714 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 2.027 -17.311 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.168 4.168 3 C -0.131 4.131 4 C 0.070 3.930 5 H 0.141 0.859 6 N -0.341 5.341 7 C 0.171 3.829 8 C -0.327 4.327 9 N -0.104 5.104 10 C -0.259 4.259 11 C 0.113 3.887 12 C -0.484 4.484 13 H 0.108 0.892 14 C -0.180 4.180 15 N -0.414 5.414 16 Si 0.990 3.010 17 H -0.266 1.266 18 H -0.213 1.213 19 H -0.215 1.215 20 N -0.324 5.324 21 C 0.273 3.727 22 O -0.366 6.366 23 O -0.280 6.280 24 C -0.059 4.059 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.239 0.761 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.670 2.798 -17.615 17.914 hybrid contribution 1.388 -0.191 1.037 1.743 sum 3.058 2.607 -16.578 17.059 Atomic orbital electron populations 1.23867 0.95867 1.02088 1.00299 1.22732 0.96044 0.97622 1.00434 1.20984 0.98027 0.97316 0.96810 1.20309 0.93213 0.93600 0.85865 0.85933 1.43899 1.15943 1.69460 1.04807 1.18964 0.89960 0.88179 0.85834 1.21739 0.93869 1.19357 0.97725 1.67507 1.35725 1.08522 0.98697 1.22826 0.94603 1.12749 0.95759 1.19141 0.91222 0.87780 0.90599 1.20819 0.96552 1.37179 0.93823 0.89231 1.27870 0.94952 0.90869 1.04273 1.70645 1.40674 1.28333 1.01700 0.81799 0.70141 0.78340 0.70731 1.26568 1.21346 1.21512 1.66626 1.36277 1.30611 0.98859 1.24970 0.78782 0.89194 0.79801 1.90721 1.62543 1.46027 1.37348 1.86498 1.54503 1.42964 1.43991 1.23218 0.94809 0.84590 1.03285 0.88541 0.88213 0.86771 0.90355 0.88036 0.76130 0.85917 0.84559 0.90254 0.91949 0.88280 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 14.32 29.01 0.42 -1.48 16 2 C -0.15 -1.57 9.25 -36.02 -0.33 -1.90 16 3 C -0.09 -0.96 5.16 -27.88 -0.14 -1.10 16 4 C 0.18 2.51 2.17 -69.08 -0.15 2.36 16 5 H 0.12 1.60 6.46 -51.93 -0.34 1.26 16 6 N -0.70 -12.96 4.47 -54.91 -0.25 -13.20 16 7 C 0.41 9.44 7.55 -155.03 -1.17 8.27 16 8 C -0.17 -3.80 10.34 -16.78 -0.17 -3.97 16 9 N -0.39 -9.65 10.47 -12.11 -0.13 -9.77 16 10 C -0.09 -2.21 10.97 -16.59 -0.18 -2.39 16 11 C 0.24 6.33 6.41 -84.84 -0.54 5.79 16 12 C -0.45 -12.15 9.59 -37.75 -0.36 -12.52 16 13 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 15 N -0.79 -21.21 13.65 55.55 0.76 -20.45 16 16 Si 1.15 28.34 25.46 -169.99 -4.33 24.02 16 17 H -0.33 -8.03 7.11 56.52 0.40 -7.63 16 18 H -0.29 -7.17 6.95 56.52 0.39 -6.78 16 19 H -0.29 -6.96 6.94 56.52 0.39 -6.57 16 20 N -0.59 -15.30 4.76 -10.15 -0.05 -15.35 16 21 C 0.43 6.64 7.15 36.01 0.26 6.90 16 22 O -0.48 -9.43 16.10 -18.75 -0.30 -9.73 16 23 O -0.36 -4.52 10.37 -39.25 -0.41 -4.92 16 24 C 0.04 0.35 10.56 101.05 1.07 1.42 16 25 H 0.10 0.92 7.84 -52.49 -0.41 0.51 16 26 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 27 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.08 0.78 7.79 -51.93 -0.40 0.37 16 29 H 0.10 0.82 7.99 -51.93 -0.42 0.40 16 30 H 0.40 7.26 8.73 -40.82 -0.36 6.90 16 31 H 0.12 2.43 6.16 -52.48 -0.32 2.11 16 32 H 0.14 3.15 8.06 -52.48 -0.42 2.72 16 33 H 0.29 7.25 8.72 -40.82 -0.36 6.90 16 34 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -32.44 315.59 -5.73 -38.18 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.38 Total: 4.05 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.41 Total: 2.43 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.34 Total: -58.78 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.71 Total: -14.66 kcal Atomic # 14 Polarization: 28.34 SS G_CDS: -4.33 Total: 24.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.44 -5.73 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158861248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.539 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds