Wall clock time and date at job start Mon Mar 30 2020 02:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00099 * 2 1 4 4 C 1.53001 * 109.46882 * 125.00299 * 3 2 1 5 5 H 1.08993 * 109.47441 * 55.00369 * 4 3 2 6 6 N 1.46507 * 109.47081 * 295.00048 * 4 3 2 7 7 C 1.38821 * 120.00171 * 155.00148 * 6 4 3 8 8 C 1.39965 * 119.96892 * 359.97438 * 7 6 4 9 9 N 1.32126 * 120.31908 * 180.02562 * 8 7 6 10 10 C 1.31933 * 120.27042 * 359.65399 * 9 8 7 11 11 C 1.40682 * 119.93041 * 0.62509 * 10 9 8 12 12 C 1.41269 * 120.15272 * 179.68278 * 11 10 9 13 13 H 1.08001 * 120.00803 * 6.16351 * 12 11 10 14 14 C 1.40054 * 119.99933 * 186.16640 * 12 11 10 15 15 N 1.30738 * 120.00325 * 176.74440 * 14 12 11 16 16 Si 1.86797 * 119.99891 * 356.74772 * 14 12 11 17 17 H 1.48502 * 109.47307 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.46923 * 299.99731 * 16 14 12 19 19 H 1.48494 * 109.47455 * 59.99895 * 16 14 12 20 20 N 1.32230 * 119.97361 * 180.02562 * 7 6 4 21 21 C 1.50703 * 109.47010 * 175.00342 * 4 3 2 22 22 O 1.20824 * 119.99828 * 119.99644 * 21 4 3 23 23 O 1.34228 * 119.99902 * 299.99835 * 21 4 3 24 24 C 1.45195 * 117.00002 * 179.97438 * 23 21 4 25 25 H 1.08000 * 119.99832 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99775 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99832 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46973 * 5.00555 * 3 2 1 29 29 H 1.08997 * 109.47490 * 245.00476 * 3 2 1 30 30 H 0.97001 * 119.99904 * 335.00193 * 6 4 3 31 31 H 1.08005 * 119.84331 * 0.02562 * 8 7 6 32 32 H 1.08003 * 120.03595 * 180.29933 * 10 9 8 33 33 H 0.96999 * 119.99762 * 355.08421 * 15 14 12 34 34 H 1.08999 * 109.47308 * 59.99882 * 24 23 21 35 35 H 1.08999 * 109.47506 * 179.97438 * 24 23 21 36 36 H 1.08999 * 109.47277 * 300.00017 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6827 0.4573 1.1403 6 7 2.2786 1.3222 2.4362 7 6 2.8645 0.8330 3.5958 8 6 4.1777 0.3498 3.5655 9 7 4.7419 -0.1177 4.6650 10 6 4.0743 -0.1269 5.8029 11 6 2.7516 0.3506 5.8446 12 6 2.0301 0.3367 7.0591 13 1 2.5233 0.0532 7.9771 14 6 0.6751 0.6906 7.0726 15 7 -0.0088 0.6167 8.1844 16 14 -0.1551 1.2682 5.5022 17 1 -1.5802 1.5792 5.7811 18 1 0.5289 2.4868 5.0000 19 1 -0.0744 0.1972 4.4767 20 7 2.1810 0.8231 4.7277 21 6 3.8748 2.5825 1.1121 22 8 3.8444 3.3819 2.0176 23 8 4.6564 2.8073 0.0443 24 6 5.4372 4.0314 0.0449 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.3684 1.6568 2.4566 31 1 4.7326 0.3592 2.6390 32 1 4.5408 -0.5055 6.7004 33 1 0.4019 0.2498 8.9829 34 1 6.1076 4.0343 0.9044 35 1 6.0230 4.0893 -0.8725 36 1 4.7676 4.8895 0.1036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158861248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:17 Heat of formation + Delta-G solvation = -52.652491 kcal Electronic energy + Delta-G solvation = -21559.423567 eV Core-core repulsion = 18235.981699 eV Total energy + Delta-G solvation = -3323.441868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87584 -41.08145 -38.35342 -37.30350 -36.16597 -35.33075 -34.11956 -32.04662 -30.00509 -28.39588 -27.81268 -25.47257 -24.69721 -23.25676 -21.74954 -20.84957 -20.43692 -18.84590 -18.58117 -18.14350 -17.69708 -17.28724 -17.10602 -16.31786 -15.82526 -15.57190 -15.28480 -14.98896 -14.85541 -14.56262 -14.26570 -14.02627 -13.50122 -13.39276 -13.06321 -12.98459 -12.96615 -12.49053 -12.25781 -12.08416 -11.88200 -11.80960 -11.51833 -11.37003 -11.07098 -10.80796 -10.21923 -9.76170 -9.18429 -8.91009 -6.96542 0.50611 0.78297 1.05397 1.40753 1.53197 1.60990 1.68582 1.96432 2.21397 2.40624 2.61834 3.49842 3.57991 3.75415 3.80046 4.01711 4.04359 4.19633 4.24965 4.31542 4.32385 4.40622 4.60803 4.70352 4.73991 4.83177 4.90791 5.11429 5.27591 5.29163 5.34282 5.70037 5.78620 5.84296 5.88724 6.17964 6.32456 6.58016 6.68899 7.06876 7.51373 7.83718 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.006448 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.855149 B = 4341.060885 C = 5078.846081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.083 4.083 4 C 0.174 3.826 5 H 0.139 0.861 6 N -0.698 5.698 7 C 0.406 3.594 8 C -0.155 4.155 9 N -0.399 5.399 10 C -0.112 4.112 11 C 0.228 3.772 12 C -0.479 4.479 13 H 0.082 0.918 14 C 0.019 3.981 15 N -0.811 5.811 16 Si 1.188 2.812 17 H -0.327 1.327 18 H -0.296 1.296 19 H -0.284 1.284 20 N -0.611 5.611 21 C 0.441 3.559 22 O -0.531 6.531 23 O -0.351 6.351 24 C 0.028 3.972 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.404 0.596 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.287 0.713 34 H 0.050 0.950 35 H 0.140 0.860 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 2.156 -20.500 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C -0.120 4.120 4 C 0.066 3.934 5 H 0.156 0.844 6 N -0.332 5.332 7 C 0.164 3.836 8 C -0.317 4.317 9 N -0.110 5.110 10 C -0.281 4.281 11 C 0.102 3.898 12 C -0.512 4.512 13 H 0.100 0.900 14 C -0.200 4.200 15 N -0.433 5.433 16 Si 1.022 2.978 17 H -0.261 1.261 18 H -0.225 1.225 19 H -0.212 1.212 20 N -0.344 5.344 21 C 0.282 3.718 22 O -0.420 6.420 23 O -0.267 6.267 24 C -0.066 4.066 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.241 0.759 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.158 0.842 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.266 2.912 -20.833 21.157 hybrid contribution 1.362 -0.181 1.753 2.227 sum 3.628 2.731 -19.080 19.613 Atomic orbital electron populations 1.24046 0.96124 1.02679 0.99933 1.22830 0.96166 0.97910 1.00720 1.21002 0.97532 0.97431 0.96064 1.20729 0.94049 0.93533 0.85092 0.84419 1.44098 1.16310 1.68006 1.04813 1.19285 0.90226 0.87731 0.86376 1.22341 0.93934 1.17040 0.98356 1.67558 1.35842 1.08678 0.98947 1.22931 0.94469 1.14026 0.96631 1.19282 0.91857 0.87781 0.90874 1.20822 0.97013 1.39310 0.94059 0.90000 1.28487 0.95341 0.90816 1.05397 1.70647 1.40877 1.29783 1.02004 0.81338 0.69659 0.77522 0.69269 1.26084 1.22514 1.21179 1.66610 1.37111 1.31079 0.99605 1.25069 0.78453 0.88751 0.79534 1.90722 1.64246 1.47764 1.39229 1.86487 1.53884 1.43966 1.42322 1.23539 0.94615 0.83497 1.04913 0.87944 0.87874 0.86258 0.89913 0.85101 0.75939 0.82625 0.83561 0.90153 0.93089 0.84222 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 14.32 67.78 0.97 -2.47 16 2 C -0.16 -2.80 9.25 25.65 0.24 -2.56 16 3 C -0.08 -1.38 5.16 29.85 0.15 -1.23 16 4 C 0.17 4.28 2.17 44.25 0.10 4.38 16 5 H 0.14 3.02 6.46 -2.39 -0.02 3.00 16 6 N -0.70 -24.07 4.47 -327.65 -1.46 -25.53 16 7 C 0.41 17.96 7.55 133.38 1.01 18.97 16 8 C -0.15 -6.69 10.34 85.07 0.88 -5.81 16 9 N -0.40 -19.02 10.47 -192.22 -2.01 -21.04 16 10 C -0.11 -5.64 10.97 85.27 0.94 -4.70 16 11 C 0.23 12.23 6.41 40.15 0.26 12.49 16 12 C -0.48 -26.43 9.59 23.46 0.22 -26.21 16 13 H 0.08 4.49 8.06 -2.91 -0.02 4.46 16 14 C 0.02 1.04 5.52 85.30 0.47 1.51 16 15 N -0.81 -44.11 13.65 21.84 0.30 -43.81 16 16 Si 1.19 57.79 25.46 68.60 1.75 59.54 16 17 H -0.33 -15.46 7.11 99.48 0.71 -14.75 16 18 H -0.30 -14.80 6.95 99.48 0.69 -14.11 16 19 H -0.28 -13.46 6.94 99.48 0.69 -12.77 16 20 N -0.61 -31.26 4.76 -186.01 -0.88 -32.15 16 21 C 0.44 12.26 7.15 71.24 0.51 12.77 16 22 O -0.53 -19.96 16.10 21.97 0.35 -19.61 16 23 O -0.35 -7.48 10.37 -51.40 -0.53 -8.02 16 24 C 0.03 0.47 10.56 113.37 1.20 1.67 16 25 H 0.10 1.69 7.84 -2.91 -0.02 1.66 16 26 H 0.10 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.08 1.35 7.79 -2.39 -0.02 1.33 16 29 H 0.13 1.48 7.99 -2.39 -0.02 1.46 16 30 H 0.40 13.79 8.73 -92.71 -0.81 12.98 16 31 H 0.16 5.59 6.16 -2.91 -0.02 5.57 16 32 H 0.15 6.84 8.06 -2.91 -0.02 6.82 16 33 H 0.29 14.95 8.72 -92.71 -0.81 14.14 16 34 H 0.05 1.00 8.13 -2.39 -0.02 0.99 16 35 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 Total: -1.00 -69.74 315.59 4.67 -65.07 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.22 Total: 16.72 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.94 Total: 8.82 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -4.06 Total: -122.53 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.18 Total: -27.62 kcal Atomic # 14 Polarization: 57.79 SS G_CDS: 1.75 Total: 59.54 kcal Total: -69.74 4.67 -65.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158861248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.418 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds