Wall clock time and date at job start Mon Mar 30 2020 02:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00093 * 2 1 4 4 C 1.53006 * 109.46984 * 125.00141 * 3 2 1 5 5 H 1.09003 * 109.46921 * 305.00514 * 4 3 2 6 6 N 1.46507 * 109.46842 * 65.00188 * 4 3 2 7 7 C 1.38821 * 120.00171 * 205.00041 * 6 4 3 8 8 C 1.39965 * 119.96892 * 359.97438 * 7 6 4 9 9 N 1.32126 * 120.31908 * 180.02562 * 8 7 6 10 10 C 1.31933 * 120.27042 * 359.65399 * 9 8 7 11 11 C 1.40682 * 119.93041 * 0.62509 * 10 9 8 12 12 C 1.41269 * 120.15272 * 179.68278 * 11 10 9 13 13 H 1.08001 * 120.00803 * 6.16351 * 12 11 10 14 14 C 1.40055 * 119.99950 * 186.17110 * 12 11 10 15 15 N 1.30738 * 120.00365 * 176.74439 * 14 12 11 16 16 Si 1.86802 * 120.00077 * 356.73919 * 14 12 11 17 17 H 1.48492 * 109.47464 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47098 * 300.00519 * 16 14 12 19 19 H 1.48497 * 109.46808 * 60.00257 * 16 14 12 20 20 N 1.32230 * 119.97361 * 180.02562 * 7 6 4 21 21 C 1.50699 * 109.47300 * 184.99988 * 4 3 2 22 22 O 1.20826 * 120.00124 * 240.00082 * 21 4 3 23 23 O 1.34227 * 119.99770 * 60.00304 * 21 4 3 24 24 C 1.45202 * 117.00030 * 179.97438 * 23 21 4 25 25 H 1.07996 * 120.00050 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.07993 * 120.00158 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46984 * 5.00806 * 3 2 1 29 29 H 1.08999 * 109.47601 * 245.00306 * 3 2 1 30 30 H 0.97001 * 119.99904 * 25.00086 * 6 4 3 31 31 H 1.08005 * 119.84331 * 0.02562 * 8 7 6 32 32 H 1.08003 * 120.03595 * 180.29933 * 10 9 8 33 33 H 0.96999 * 119.99762 * 355.07952 * 15 14 12 34 34 H 1.08998 * 109.47089 * 59.99820 * 24 23 21 35 35 H 1.09003 * 109.47242 * 180.02562 * 24 23 21 36 36 H 1.09006 * 109.46769 * 299.99915 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 1 2.4884 1.1467 2.1061 6 7 4.0547 0.2967 1.0000 7 6 4.7105 -0.2328 2.1031 8 6 4.3974 0.2242 3.3885 9 7 5.0175 -0.2746 4.4432 10 6 5.9328 -1.2130 4.2943 11 6 6.2604 -1.6762 3.0069 12 6 7.2445 -2.6761 2.8416 13 1 7.6760 -3.1575 3.7067 14 6 7.6609 -3.0430 1.5557 15 7 8.6165 -3.9222 1.4039 16 14 6.8507 -2.2763 0.0572 17 1 7.4667 -2.8288 -1.1757 18 1 5.3985 -2.5867 0.0665 19 1 7.0424 -0.8041 0.0899 20 7 5.6310 -1.1677 1.9385 21 6 3.6992 2.6838 1.2542 22 8 4.9008 2.7720 1.1636 23 8 2.9557 3.7891 1.4196 24 6 3.6626 5.0559 1.4813 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 4.2717 -0.0193 0.1090 31 1 3.6452 0.9882 3.5189 32 1 6.4340 -1.6215 5.1594 33 1 9.0857 -4.2672 2.1796 34 1 4.2140 5.2099 0.5538 35 1 2.9458 5.8658 1.6171 36 1 4.3588 5.0430 2.3200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158861249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:21 Heat of formation + Delta-G solvation = -31.736892 kcal Electronic energy + Delta-G solvation = -21501.103603 eV Core-core repulsion = 18178.568703 eV Total energy + Delta-G solvation = -3322.534900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60590 -39.33484 -37.14253 -36.12470 -34.33802 -33.95507 -32.35143 -30.60244 -28.52946 -27.46151 -25.93077 -24.47895 -22.82039 -21.61716 -20.43381 -19.85377 -18.50044 -17.68725 -17.15322 -16.75777 -16.33156 -15.87915 -15.43649 -15.09655 -14.55299 -14.00839 -13.87536 -13.49000 -13.33626 -13.20433 -12.97912 -12.49534 -12.28879 -11.98479 -11.81523 -11.35742 -11.27039 -11.09183 -11.04140 -10.79055 -10.78312 -10.10457 -9.88233 -9.48798 -9.39637 -9.13377 -8.96581 -7.76554 -7.25120 -7.15651 -4.95251 2.08160 2.30525 2.38417 2.60501 2.84626 3.47754 3.56544 3.64563 3.95867 4.33757 4.56877 4.60114 4.69956 4.90128 4.98178 5.04554 5.12464 5.20381 5.43308 5.44892 5.51038 5.64601 5.79668 5.83473 5.89507 6.10075 6.35862 6.41430 6.54512 6.62592 6.71755 7.19392 7.29197 7.43974 7.73045 7.83273 7.99256 8.19977 8.46364 8.96209 9.42068 9.85346 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.006076 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.376225 B = 4606.864391 C = 5062.524119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.149 4.149 3 C -0.094 4.094 4 C 0.181 3.819 5 H 0.123 0.877 6 N -0.707 5.707 7 C 0.410 3.590 8 C -0.166 4.166 9 N -0.394 5.394 10 C -0.087 4.087 11 C 0.237 3.763 12 C -0.451 4.451 13 H 0.090 0.910 14 C 0.043 3.957 15 N -0.792 5.792 16 Si 1.155 2.845 17 H -0.332 1.332 18 H -0.287 1.287 19 H -0.286 1.286 20 N -0.592 5.592 21 C 0.434 3.566 22 O -0.482 6.482 23 O -0.363 6.363 24 C 0.035 3.965 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.403 0.597 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.286 0.714 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 11.097 -4.298 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.167 4.167 3 C -0.132 4.132 4 C 0.071 3.929 5 H 0.141 0.859 6 N -0.343 5.343 7 C 0.170 3.830 8 C -0.326 4.326 9 N -0.105 5.105 10 C -0.259 4.259 11 C 0.112 3.888 12 C -0.484 4.484 13 H 0.108 0.892 14 C -0.180 4.180 15 N -0.413 5.413 16 Si 0.990 3.010 17 H -0.265 1.265 18 H -0.215 1.215 19 H -0.214 1.214 20 N -0.324 5.324 21 C 0.273 3.727 22 O -0.366 6.366 23 O -0.280 6.280 24 C -0.059 4.059 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.239 0.761 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.995 11.185 -5.730 18.078 hybrid contribution 0.556 0.041 1.586 1.681 sum -12.439 11.226 -4.144 17.260 Atomic orbital electron populations 1.23856 0.95719 1.01941 1.01064 1.22857 0.95972 0.98120 0.99743 1.20985 0.97513 0.97667 0.97004 1.20327 0.88335 0.81761 1.02495 0.85922 1.43926 1.42477 1.40330 1.07601 1.18962 0.88374 0.88902 0.86794 1.21746 1.11563 1.11791 0.87477 1.67512 1.03947 1.06382 1.32615 1.22832 1.03710 1.02514 0.96803 1.19140 0.90607 0.91111 0.87900 1.20821 1.15915 1.15306 0.96317 0.89225 1.27873 0.93832 0.92051 1.04221 1.70646 1.15324 1.18784 1.36570 0.81800 0.74569 0.75313 0.69323 1.26542 1.21468 1.21395 1.66629 1.15308 1.18198 1.32272 1.24955 0.87220 0.87295 0.73271 1.90725 1.15758 1.86692 1.43416 1.86499 1.41928 1.15909 1.83629 1.23224 0.97950 0.82241 1.02494 0.88299 0.88484 0.86543 0.88563 0.89768 0.76091 0.85916 0.84543 0.90247 0.92119 0.88282 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.32 29.01 0.42 -1.29 16 2 C -0.15 -1.57 9.25 -36.03 -0.33 -1.90 16 3 C -0.09 -0.96 5.16 -27.88 -0.14 -1.11 16 4 C 0.18 2.53 2.17 -69.08 -0.15 2.38 16 5 H 0.12 1.65 6.46 -51.93 -0.34 1.31 16 6 N -0.71 -12.83 4.45 -54.91 -0.24 -13.07 16 7 C 0.41 9.35 7.55 -155.03 -1.17 8.18 16 8 C -0.17 -3.78 10.33 -16.78 -0.17 -3.95 16 9 N -0.39 -9.64 10.47 -12.11 -0.13 -9.77 16 10 C -0.09 -2.18 10.97 -16.59 -0.18 -2.37 16 11 C 0.24 6.30 6.41 -84.84 -0.54 5.75 16 12 C -0.45 -12.09 9.59 -37.75 -0.36 -12.45 16 13 H 0.09 2.35 8.06 -52.49 -0.42 1.92 16 14 C 0.04 1.16 5.52 -17.34 -0.10 1.06 16 15 N -0.79 -21.15 13.65 55.55 0.76 -20.39 16 16 Si 1.15 28.25 25.46 -169.99 -4.33 23.92 16 17 H -0.33 -8.01 7.11 56.52 0.40 -7.61 16 18 H -0.29 -6.83 6.95 56.52 0.39 -6.44 16 19 H -0.29 -7.24 6.94 56.52 0.39 -6.84 16 20 N -0.59 -15.20 4.76 -10.15 -0.05 -15.24 16 21 C 0.43 6.67 7.15 36.01 0.26 6.93 16 22 O -0.48 -9.44 16.10 -18.75 -0.30 -9.74 16 23 O -0.36 -4.55 10.37 -39.25 -0.41 -4.96 16 24 C 0.03 0.35 10.56 101.05 1.07 1.42 16 25 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 26 H 0.10 0.73 7.84 -52.48 -0.41 0.32 16 27 H 0.12 1.40 8.03 -52.49 -0.42 0.98 16 28 H 0.10 0.80 7.65 -51.93 -0.40 0.40 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.40 7.05 8.73 -40.82 -0.36 6.69 16 31 H 0.12 2.44 6.16 -52.48 -0.32 2.12 16 32 H 0.14 3.14 8.06 -52.48 -0.42 2.72 16 33 H 0.29 7.24 8.72 -40.82 -0.36 6.88 16 34 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -32.17 315.55 -5.73 -37.90 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.37 Total: 3.94 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.41 Total: 2.65 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.34 Total: -58.47 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.71 Total: -14.70 kcal Atomic # 14 Polarization: 28.25 SS G_CDS: -4.33 Total: 23.92 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.17 -5.73 -37.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158861249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.164 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds