Wall clock time and date at job start Mon Mar 30 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00093 * 2 1 4 4 C 1.53006 * 109.46984 * 125.00141 * 3 2 1 5 5 H 1.09003 * 109.46921 * 305.00514 * 4 3 2 6 6 N 1.46507 * 109.46842 * 65.00188 * 4 3 2 7 7 C 1.38821 * 120.00171 * 205.00041 * 6 4 3 8 8 C 1.39965 * 119.96892 * 359.97438 * 7 6 4 9 9 N 1.32126 * 120.31908 * 180.02562 * 8 7 6 10 10 C 1.31933 * 120.27042 * 359.65399 * 9 8 7 11 11 C 1.40682 * 119.93041 * 0.62509 * 10 9 8 12 12 C 1.41269 * 120.15272 * 179.68278 * 11 10 9 13 13 H 1.08001 * 120.00803 * 6.16351 * 12 11 10 14 14 C 1.40055 * 119.99950 * 186.17110 * 12 11 10 15 15 N 1.30738 * 120.00365 * 176.74439 * 14 12 11 16 16 Si 1.86802 * 120.00077 * 356.73919 * 14 12 11 17 17 H 1.48492 * 109.47464 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47098 * 300.00519 * 16 14 12 19 19 H 1.48497 * 109.46808 * 60.00257 * 16 14 12 20 20 N 1.32230 * 119.97361 * 180.02562 * 7 6 4 21 21 C 1.50699 * 109.47300 * 184.99988 * 4 3 2 22 22 O 1.20826 * 120.00124 * 240.00082 * 21 4 3 23 23 O 1.34227 * 119.99770 * 60.00304 * 21 4 3 24 24 C 1.45202 * 117.00030 * 179.97438 * 23 21 4 25 25 H 1.07996 * 120.00050 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.07993 * 120.00158 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46984 * 5.00806 * 3 2 1 29 29 H 1.08999 * 109.47601 * 245.00306 * 3 2 1 30 30 H 0.97001 * 119.99904 * 25.00086 * 6 4 3 31 31 H 1.08005 * 119.84331 * 0.02562 * 8 7 6 32 32 H 1.08003 * 120.03595 * 180.29933 * 10 9 8 33 33 H 0.96999 * 119.99762 * 355.07952 * 15 14 12 34 34 H 1.08998 * 109.47089 * 59.99820 * 24 23 21 35 35 H 1.09003 * 109.47242 * 180.02562 * 24 23 21 36 36 H 1.09006 * 109.46769 * 299.99915 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 1 2.4884 1.1467 2.1061 6 7 4.0547 0.2967 1.0000 7 6 4.7105 -0.2328 2.1031 8 6 4.3974 0.2242 3.3885 9 7 5.0175 -0.2746 4.4432 10 6 5.9328 -1.2130 4.2943 11 6 6.2604 -1.6762 3.0069 12 6 7.2445 -2.6761 2.8416 13 1 7.6760 -3.1575 3.7067 14 6 7.6609 -3.0430 1.5557 15 7 8.6165 -3.9222 1.4039 16 14 6.8507 -2.2763 0.0572 17 1 7.4667 -2.8288 -1.1757 18 1 5.3985 -2.5867 0.0665 19 1 7.0424 -0.8041 0.0899 20 7 5.6310 -1.1677 1.9385 21 6 3.6992 2.6838 1.2542 22 8 4.9008 2.7720 1.1636 23 8 2.9557 3.7891 1.4196 24 6 3.6626 5.0559 1.4813 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 4.2717 -0.0193 0.1090 31 1 3.6452 0.9882 3.5189 32 1 6.4340 -1.6215 5.1594 33 1 9.0857 -4.2672 2.1796 34 1 4.2140 5.2099 0.5538 35 1 2.9458 5.8658 1.6171 36 1 4.3588 5.0430 2.3200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158861249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:20 Heat of formation + Delta-G solvation = -52.585252 kcal Electronic energy + Delta-G solvation = -21502.007655 eV Core-core repulsion = 18178.568703 eV Total energy + Delta-G solvation = -3323.438953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.88581 -41.09010 -38.35530 -37.31285 -36.17285 -35.36623 -34.13727 -32.05645 -29.96334 -28.39619 -27.82135 -25.54241 -24.67664 -23.27601 -21.78153 -20.76841 -20.36191 -18.97196 -18.60474 -18.11253 -17.70806 -17.30719 -17.09704 -16.11144 -15.97712 -15.70595 -15.48757 -14.96362 -14.74919 -14.53426 -14.31458 -14.03622 -13.49540 -13.09835 -13.06311 -13.01161 -12.90909 -12.65744 -12.36901 -12.07812 -11.87992 -11.81230 -11.51850 -11.38086 -11.07896 -10.80506 -10.23882 -9.76614 -9.19462 -8.91992 -6.97087 0.49671 0.77284 1.05220 1.38327 1.52717 1.60176 1.69050 1.95070 2.19409 2.38836 2.61773 3.49728 3.59906 3.74700 3.79574 4.00763 4.04453 4.15903 4.23700 4.31313 4.32122 4.41299 4.62055 4.70144 4.72534 4.81819 4.91579 5.13520 5.27142 5.28467 5.33351 5.68615 5.80516 5.82508 5.90341 6.17034 6.31764 6.57255 6.67933 7.05879 7.50418 7.83190 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.006076 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.376225 B = 4606.864391 C = 5062.524119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.172 4.172 3 C -0.081 4.081 4 C 0.175 3.825 5 H 0.135 0.865 6 N -0.699 5.699 7 C 0.405 3.595 8 C -0.155 4.155 9 N -0.400 5.400 10 C -0.111 4.111 11 C 0.228 3.772 12 C -0.478 4.478 13 H 0.083 0.917 14 C 0.019 3.981 15 N -0.811 5.811 16 Si 1.188 2.812 17 H -0.327 1.327 18 H -0.280 1.280 19 H -0.301 1.301 20 N -0.611 5.611 21 C 0.441 3.559 22 O -0.531 6.531 23 O -0.351 6.351 24 C 0.028 3.972 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.406 0.594 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.287 0.713 34 H 0.060 0.940 35 H 0.140 0.860 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 13.163 -5.001 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C -0.118 4.118 4 C 0.067 3.933 5 H 0.152 0.848 6 N -0.334 5.334 7 C 0.163 3.837 8 C -0.317 4.317 9 N -0.111 5.111 10 C -0.280 4.280 11 C 0.102 3.898 12 C -0.511 4.511 13 H 0.101 0.899 14 C -0.200 4.200 15 N -0.433 5.433 16 Si 1.022 2.978 17 H -0.261 1.261 18 H -0.208 1.208 19 H -0.230 1.230 20 N -0.344 5.344 21 C 0.282 3.718 22 O -0.419 6.419 23 O -0.267 6.267 24 C -0.066 4.066 25 H 0.121 0.879 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.107 0.893 30 H 0.242 0.758 31 H 0.172 0.828 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.920 13.256 -6.431 21.692 hybrid contribution 1.216 -0.361 1.819 2.218 sum -14.704 12.894 -4.611 20.093 Atomic orbital electron populations 1.24081 0.95155 1.03227 0.98167 1.22727 0.96538 0.97378 1.02414 1.20979 0.96937 0.98576 0.95347 1.20738 0.87583 0.80012 1.04962 0.84788 1.44113 1.42181 1.40597 1.06495 1.19276 0.87758 0.88161 0.88456 1.22324 1.10981 1.11241 0.87156 1.67558 1.03925 1.06238 1.33340 1.22943 1.04758 1.03460 0.96794 1.19288 0.90604 0.91107 0.88818 1.20824 1.17290 1.16676 0.96311 0.89907 1.28469 0.93966 0.92142 1.05441 1.70647 1.16094 1.19806 1.36711 0.81342 0.74487 0.73823 0.68178 1.26090 1.20776 1.22974 1.66612 1.16227 1.19264 1.32300 1.25064 0.86507 0.88323 0.71922 1.90725 1.17799 1.87446 1.45944 1.86487 1.41367 1.16101 1.82723 1.23548 0.99080 0.81856 1.02092 0.87931 0.86279 0.88694 0.85669 0.89305 0.75783 0.82786 0.83498 0.90133 0.92111 0.84186 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 14.32 67.78 0.97 -1.46 16 2 C -0.17 -3.15 9.25 25.64 0.24 -2.91 16 3 C -0.08 -1.38 5.16 29.85 0.15 -1.23 16 4 C 0.18 4.40 2.17 44.25 0.10 4.50 16 5 H 0.13 3.11 6.46 -2.39 -0.02 3.09 16 6 N -0.70 -24.22 4.45 -327.64 -1.46 -25.68 16 7 C 0.41 18.03 7.55 133.38 1.01 19.04 16 8 C -0.16 -6.77 10.33 85.07 0.88 -5.89 16 9 N -0.40 -19.15 10.47 -192.22 -2.01 -21.16 16 10 C -0.11 -5.59 10.97 85.27 0.94 -4.66 16 11 C 0.23 12.22 6.41 40.15 0.26 12.48 16 12 C -0.48 -26.33 9.59 23.46 0.22 -26.10 16 13 H 0.08 4.52 8.06 -2.91 -0.02 4.49 16 14 C 0.02 1.06 5.52 85.30 0.47 1.53 16 15 N -0.81 -44.09 13.65 21.84 0.30 -43.79 16 16 Si 1.19 58.00 25.46 68.60 1.75 59.74 16 17 H -0.33 -15.54 7.11 99.48 0.71 -14.84 16 18 H -0.28 -13.17 6.95 99.48 0.69 -12.48 16 19 H -0.30 -15.28 6.94 99.48 0.69 -14.59 16 20 N -0.61 -31.27 4.76 -186.01 -0.88 -32.16 16 21 C 0.44 12.44 7.15 71.24 0.51 12.95 16 22 O -0.53 -20.13 16.10 21.96 0.35 -19.78 16 23 O -0.35 -7.60 10.37 -51.39 -0.53 -8.13 16 24 C 0.03 0.47 10.56 113.37 1.20 1.67 16 25 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 26 H 0.12 1.19 7.84 -2.91 -0.02 1.17 16 27 H 0.09 2.15 8.03 -2.91 -0.02 2.13 16 28 H 0.13 1.46 7.65 -2.39 -0.02 1.44 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.41 13.70 8.73 -92.71 -0.81 12.89 16 31 H 0.16 5.64 6.16 -2.91 -0.02 5.63 16 32 H 0.15 6.87 8.06 -2.91 -0.02 6.85 16 33 H 0.29 14.95 8.72 -92.71 -0.81 14.14 16 34 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 35 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.01 8.13 -2.38 -0.02 0.99 16 Total: -1.00 -69.69 315.55 4.67 -65.02 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.22 Total: 16.02 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.94 Total: 9.92 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -4.06 Total: -122.79 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.18 Total: -27.91 kcal Atomic # 14 Polarization: 58.00 SS G_CDS: 1.75 Total: 59.74 kcal Total: -69.69 4.67 -65.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158861249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.434 kcal (2) G-P(sol) polarization free energy of solvation -69.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds