Wall clock time and date at job start Mon Mar 30 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 117.00288 * 2 1 4 4 O 1.20835 * 119.99668 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00413 * 180.02562 * 3 2 1 6 6 H 1.09000 * 115.54250 * 325.71414 * 5 3 2 7 7 C 1.52991 * 117.50259 * 111.38782 * 5 3 2 8 8 C 1.52998 * 117.50020 * 180.02562 * 5 3 2 9 9 H 1.09002 * 117.49928 * 359.97438 * 8 5 3 10 10 C 1.52995 * 117.50120 * 145.02059 * 8 5 3 11 11 N 1.46499 * 109.47334 * 184.99891 * 10 8 5 12 12 C 1.38825 * 120.00140 * 179.97438 * 11 10 8 13 13 C 1.39964 * 119.96944 * 359.97438 * 12 11 10 14 14 N 1.32135 * 120.31817 * 179.97438 * 13 12 11 15 15 C 1.31924 * 120.27025 * 0.02562 * 14 13 12 16 16 C 1.40686 * 119.93735 * 359.97438 * 15 14 13 17 17 C 1.41265 * 120.15790 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00311 * 353.82209 * 17 16 15 19 19 C 1.40060 * 120.00004 * 173.82639 * 17 16 15 20 20 N 1.30732 * 119.99975 * 6.32247 * 19 17 16 21 21 Si 1.86795 * 119.99848 * 186.32627 * 19 17 16 22 22 H 1.48500 * 109.47354 * 59.99951 * 21 19 17 23 23 H 1.48504 * 109.46986 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47280 * 299.99260 * 21 19 17 25 25 N 1.32235 * 119.97199 * 179.72263 * 12 11 10 26 26 H 1.08999 * 109.46996 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47432 * 59.99996 * 1 2 3 29 29 H 1.08996 * 117.50302 * 214.98102 * 7 5 3 30 30 H 1.09007 * 117.49824 * 359.97438 * 7 5 3 31 31 H 1.09009 * 109.46884 * 304.99622 * 10 8 5 32 32 H 1.08997 * 109.47539 * 64.99422 * 10 8 5 33 33 H 0.96999 * 119.99442 * 359.97438 * 11 10 8 34 34 H 1.07997 * 119.84289 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.03497 * 180.02562 * 15 14 13 36 36 H 0.97000 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0784 0.4879 0.5531 7 6 4.2454 1.8063 -1.2643 8 6 4.2008 2.6671 0.0001 9 1 3.5297 3.5260 0.0005 10 6 5.5059 2.8484 0.7776 11 7 5.8920 4.2615 0.7611 12 6 7.0504 4.6722 1.4066 13 6 7.8487 3.7357 2.0734 14 7 8.9529 4.1189 2.6896 15 6 9.3124 5.3882 2.6820 16 6 8.5182 6.3389 2.0152 17 6 8.8990 7.6992 2.0036 18 1 9.7448 8.0282 2.5890 19 6 8.1796 8.6213 1.2330 20 7 7.0843 8.2501 0.6233 21 14 8.7851 10.3814 1.0764 22 1 10.1403 10.3865 0.4693 23 1 7.8534 11.1504 0.2126 24 1 8.8430 11.0066 2.4222 25 7 7.4012 5.9470 1.3866 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 5.2046 1.3693 -1.5420 30 1 3.6037 2.0985 -2.0956 31 1 5.3631 2.5228 1.8081 32 1 6.2912 2.2517 0.3136 33 1 5.3381 4.9101 0.2991 34 1 7.5608 2.6949 2.0844 35 1 10.2160 5.6972 3.1866 36 1 6.5863 8.8886 0.0893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161044662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:09 Heat of formation + Delta-G solvation = -13.317656 kcal Electronic energy + Delta-G solvation = -20218.396974 eV Core-core repulsion = 16896.660792 eV Total energy + Delta-G solvation = -3321.736182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80627 -38.94178 -37.96657 -36.41279 -34.68983 -33.82034 -31.56241 -29.49772 -28.41385 -26.17811 -25.79286 -24.41615 -22.44936 -21.46020 -20.85165 -20.28814 -18.07275 -17.45481 -16.96404 -16.60470 -16.46426 -15.28753 -15.01323 -14.89804 -14.58707 -14.29141 -13.93565 -13.56535 -13.38263 -12.96840 -12.90144 -12.57060 -12.18297 -11.62415 -11.46822 -11.31932 -11.15966 -11.07411 -10.90167 -10.72444 -10.61513 -10.51741 -10.37319 -9.82017 -9.57780 -9.36962 -8.33501 -7.37381 -6.71111 -6.43359 -4.64523 1.86944 2.37320 2.72968 3.04929 3.06942 3.13864 3.29393 3.47654 3.88637 3.98845 4.42931 4.51332 4.69637 4.73558 4.81686 4.84093 4.90164 5.18269 5.24070 5.43804 5.61020 5.70166 5.82522 5.97839 6.06834 6.11170 6.16227 6.34507 6.53839 6.80258 7.05290 7.14622 7.53015 7.61164 7.96398 8.05655 8.44739 8.57299 8.86677 9.43059 10.01915 10.20416 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.003319 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.924110 B = 8433.877417 C = 9234.391697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.492 3.508 4 O -0.504 6.504 5 C -0.165 4.165 6 H 0.140 0.860 7 C -0.139 4.139 8 C -0.121 4.121 9 H 0.126 0.874 10 C 0.169 3.831 11 N -0.730 5.730 12 C 0.374 3.626 13 C -0.171 4.171 14 N -0.408 5.408 15 C -0.108 4.108 16 C 0.245 3.755 17 C -0.416 4.416 18 H 0.090 0.910 19 C 0.068 3.932 20 N -0.709 5.709 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.263 1.263 25 N -0.509 5.509 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 -11.467 -4.577 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.335 3.665 4 O -0.392 6.392 5 C -0.184 4.184 6 H 0.158 0.842 7 C -0.176 4.176 8 C -0.140 4.140 9 H 0.144 0.856 10 C 0.043 3.957 11 N -0.368 5.368 12 C 0.130 3.870 13 C -0.333 4.333 14 N -0.119 5.119 15 C -0.278 4.278 16 C 0.117 3.883 17 C -0.449 4.449 18 H 0.108 0.892 19 C -0.159 4.159 20 N -0.330 5.330 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.188 1.188 25 N -0.235 5.235 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.233 0.767 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.551 -11.345 -4.678 16.184 hybrid contribution -0.388 0.971 -0.271 1.080 sum -10.939 -10.374 -4.949 15.868 Atomic orbital electron populations 1.23283 0.76232 1.03700 1.02656 1.86488 1.23409 1.33257 1.84111 1.22688 0.90552 0.81236 0.72028 1.90691 1.66866 1.36427 1.45194 1.21800 0.88027 1.01469 1.07135 0.84228 1.23248 1.02129 1.01354 0.90847 1.22674 0.98800 0.93119 0.99365 0.85632 1.20648 0.92152 0.84019 0.98842 1.44012 1.25597 1.06570 1.60583 1.19472 0.86347 0.92004 0.89148 1.21910 0.98985 0.98144 1.14234 1.67497 1.13191 1.18560 1.12656 1.22898 1.03889 0.89465 1.11536 1.19084 0.87237 0.94218 0.87715 1.19589 1.11667 0.90873 1.22752 0.89199 1.26135 0.94166 1.01039 0.94564 1.70100 1.09946 1.35117 1.17816 0.86323 0.79705 0.81112 0.79349 1.18776 1.20232 1.18790 1.69024 1.18066 1.10975 1.25450 0.91799 0.88021 0.91888 0.86640 0.87936 0.91969 0.92031 0.76695 0.86297 0.85276 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.73 10.56 -39.25 -0.41 -4.14 16 3 C 0.49 5.92 7.74 36.01 0.28 6.20 16 4 O -0.50 -7.54 16.01 -18.76 -0.30 -7.84 16 5 C -0.16 -1.70 6.02 -91.78 -0.55 -2.25 16 6 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 7 C -0.14 -1.35 9.88 -26.72 -0.26 -1.61 16 8 C -0.12 -1.47 5.36 -90.61 -0.49 -1.95 16 9 H 0.13 1.72 7.57 -51.93 -0.39 1.32 16 10 C 0.17 2.44 5.18 -4.04 -0.02 2.42 16 11 N -0.73 -14.11 5.72 -60.28 -0.34 -14.45 16 12 C 0.37 9.06 7.66 -155.02 -1.19 7.87 16 13 C -0.17 -4.09 10.50 -16.78 -0.18 -4.27 16 14 N -0.41 -10.44 10.47 -12.11 -0.13 -10.56 16 15 C -0.11 -2.80 10.97 -16.59 -0.18 -2.98 16 16 C 0.25 6.77 6.54 -84.83 -0.55 6.22 16 17 C -0.42 -10.91 9.15 -37.75 -0.35 -11.25 16 18 H 0.09 2.16 7.85 -52.49 -0.41 1.75 16 19 C 0.07 1.68 5.49 -17.34 -0.10 1.58 16 20 N -0.71 -18.38 11.51 55.55 0.64 -17.74 16 21 Si 0.91 18.12 29.56 -169.99 -5.03 13.09 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 N -0.51 -13.94 8.10 -10.14 -0.08 -14.02 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.12 0.96 8.03 -51.93 -0.42 0.55 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.90 7.93 -51.92 -0.41 0.49 16 32 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 33 H 0.40 7.68 8.52 -40.82 -0.35 7.33 16 34 H 0.12 2.48 6.70 -52.49 -0.35 2.12 16 35 H 0.13 3.06 8.06 -52.49 -0.42 2.63 16 36 H 0.27 6.46 8.29 -40.82 -0.34 6.13 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -32.10 319.62 -7.76 -39.86 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.40 Total: 9.69 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.52 Total: 1.29 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.09 Total: -56.77 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.71 Total: -11.98 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.10 -7.76 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161044662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.540 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds