Wall clock time and date at job start Mon Mar 30 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 117.00288 * 2 1 4 4 O 1.20835 * 119.99668 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00413 * 180.02562 * 3 2 1 6 6 H 1.09000 * 115.54250 * 325.71414 * 5 3 2 7 7 C 1.52991 * 117.50259 * 111.38782 * 5 3 2 8 8 C 1.52998 * 117.50020 * 180.02562 * 5 3 2 9 9 H 1.09002 * 117.49928 * 359.97438 * 8 5 3 10 10 C 1.52995 * 117.50120 * 145.02059 * 8 5 3 11 11 N 1.46499 * 109.47334 * 184.99891 * 10 8 5 12 12 C 1.38825 * 120.00140 * 179.97438 * 11 10 8 13 13 C 1.39964 * 119.96944 * 359.97438 * 12 11 10 14 14 N 1.32135 * 120.31817 * 179.97438 * 13 12 11 15 15 C 1.31924 * 120.27025 * 0.02562 * 14 13 12 16 16 C 1.40686 * 119.93735 * 359.97438 * 15 14 13 17 17 C 1.41265 * 120.15790 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00311 * 353.82209 * 17 16 15 19 19 C 1.40060 * 120.00004 * 173.82639 * 17 16 15 20 20 N 1.30732 * 119.99975 * 6.32247 * 19 17 16 21 21 Si 1.86795 * 119.99848 * 186.32627 * 19 17 16 22 22 H 1.48500 * 109.47354 * 59.99951 * 21 19 17 23 23 H 1.48504 * 109.46986 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47280 * 299.99260 * 21 19 17 25 25 N 1.32235 * 119.97199 * 179.72263 * 12 11 10 26 26 H 1.08999 * 109.46996 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47432 * 59.99996 * 1 2 3 29 29 H 1.08996 * 117.50302 * 214.98102 * 7 5 3 30 30 H 1.09007 * 117.49824 * 359.97438 * 7 5 3 31 31 H 1.09009 * 109.46884 * 304.99622 * 10 8 5 32 32 H 1.08997 * 109.47539 * 64.99422 * 10 8 5 33 33 H 0.96999 * 119.99442 * 359.97438 * 11 10 8 34 34 H 1.07997 * 119.84289 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.03497 * 180.02562 * 15 14 13 36 36 H 0.97000 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0784 0.4879 0.5531 7 6 4.2454 1.8063 -1.2643 8 6 4.2008 2.6671 0.0001 9 1 3.5297 3.5260 0.0005 10 6 5.5059 2.8484 0.7776 11 7 5.8920 4.2615 0.7611 12 6 7.0504 4.6722 1.4066 13 6 7.8487 3.7357 2.0734 14 7 8.9529 4.1189 2.6896 15 6 9.3124 5.3882 2.6820 16 6 8.5182 6.3389 2.0152 17 6 8.8990 7.6992 2.0036 18 1 9.7448 8.0282 2.5890 19 6 8.1796 8.6213 1.2330 20 7 7.0843 8.2501 0.6233 21 14 8.7851 10.3814 1.0764 22 1 10.1403 10.3865 0.4693 23 1 7.8534 11.1504 0.2126 24 1 8.8430 11.0066 2.4222 25 7 7.4012 5.9470 1.3866 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 5.2046 1.3693 -1.5420 30 1 3.6037 2.0985 -2.0956 31 1 5.3631 2.5228 1.8081 32 1 6.2912 2.2517 0.3136 33 1 5.3381 4.9101 0.2991 34 1 7.5608 2.6949 2.0844 35 1 10.2160 5.6972 3.1866 36 1 6.5863 8.8886 0.0893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161044662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:09 Heat of formation + Delta-G solvation = -33.906231 kcal Electronic energy + Delta-G solvation = -20219.289762 eV Core-core repulsion = 16896.660792 eV Total energy + Delta-G solvation = -3322.628970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71935 -40.77442 -38.96360 -37.42519 -36.22878 -35.66245 -33.44610 -31.22633 -29.21537 -27.78608 -27.37795 -25.26638 -24.31058 -22.98677 -22.12243 -21.24629 -19.45375 -18.85001 -18.26191 -17.86970 -17.39815 -17.08273 -16.67814 -16.53947 -15.82286 -15.56665 -15.08777 -14.86349 -14.67352 -14.39449 -14.20103 -13.53344 -13.27178 -13.20957 -12.96754 -12.91746 -12.52725 -12.41000 -12.05189 -11.88210 -11.85392 -11.75386 -11.54476 -11.51678 -11.34141 -11.09433 -10.19177 -9.30136 -8.46027 -8.31120 -6.61891 0.86915 0.94666 1.28232 1.43092 1.55480 1.57019 1.59510 2.22269 2.44195 2.74588 2.85428 3.56209 3.63118 3.70079 3.93529 4.02519 4.17571 4.25756 4.27913 4.29282 4.44445 4.50375 4.65877 4.69129 4.76544 4.79071 4.93556 4.98564 5.12379 5.17454 5.24350 5.29498 5.74775 6.11256 6.25937 6.64056 6.66396 6.71266 7.00763 7.49056 8.10577 8.36627 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.003319 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.924110 B = 8433.877417 C = 9234.391697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.491 3.509 4 O -0.542 6.542 5 C -0.153 4.153 6 H 0.166 0.834 7 C -0.121 4.121 8 C -0.137 4.137 9 H 0.105 0.895 10 C 0.169 3.831 11 N -0.722 5.722 12 C 0.366 3.634 13 C -0.174 4.174 14 N -0.416 5.416 15 C -0.135 4.135 16 C 0.215 3.785 17 C -0.443 4.443 18 H 0.101 0.899 19 C 0.023 3.977 20 N -0.743 5.743 21 Si 0.993 3.007 22 H -0.257 1.257 23 H -0.270 1.270 24 H -0.256 1.256 25 N -0.542 5.542 26 H 0.059 0.941 27 H 0.135 0.865 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.396 0.604 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 -12.358 -5.256 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.336 3.664 4 O -0.432 6.432 5 C -0.173 4.173 6 H 0.183 0.817 7 C -0.157 4.157 8 C -0.156 4.156 9 H 0.123 0.877 10 C 0.045 3.955 11 N -0.358 5.358 12 C 0.120 3.880 13 C -0.337 4.337 14 N -0.128 5.128 15 C -0.303 4.303 16 C 0.087 3.913 17 C -0.475 4.475 18 H 0.119 0.881 19 C -0.201 4.201 20 N -0.364 5.364 21 Si 0.813 3.187 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.180 1.180 25 N -0.270 5.270 26 H 0.078 0.922 27 H 0.153 0.847 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.230 0.770 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.757 -12.293 -5.354 17.190 hybrid contribution -0.480 1.093 -0.084 1.196 sum -11.237 -11.200 -5.438 16.772 Atomic orbital electron populations 1.23582 0.74671 1.05888 1.02455 1.86482 1.24981 1.32254 1.83514 1.23034 0.91234 0.81134 0.71020 1.90682 1.67796 1.37662 1.47044 1.21907 0.87173 1.00524 1.07660 0.81661 1.23378 1.02953 0.99337 0.90073 1.22379 0.97752 0.93757 1.01715 0.87685 1.20858 0.93693 0.81232 0.99702 1.44225 1.23825 1.08681 1.59063 1.19826 0.87590 0.91415 0.89133 1.22411 0.98351 0.99555 1.13337 1.67510 1.13906 1.18371 1.12973 1.23043 1.04758 0.89702 1.12842 1.19526 0.87912 0.95357 0.88468 1.20021 1.12569 0.91209 1.23715 0.88095 1.27103 0.93927 1.05519 0.93516 1.70191 1.11055 1.37005 1.18198 0.85093 0.79181 0.74857 0.79598 1.18138 1.19412 1.18012 1.69023 1.18665 1.12672 1.26652 0.92221 0.84660 0.91960 0.84472 0.87656 0.91677 0.90359 0.76956 0.83096 0.84098 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.80 10.56 -51.39 -0.54 -7.34 16 3 C 0.49 11.19 7.74 71.24 0.55 11.74 16 4 O -0.54 -16.10 16.01 21.94 0.35 -15.75 16 5 C -0.15 -2.81 6.02 -11.54 -0.07 -2.88 16 6 H 0.17 2.18 8.14 -2.39 -0.02 2.16 16 7 C -0.12 -2.04 9.88 30.60 0.30 -1.74 16 8 C -0.14 -3.15 5.36 -10.79 -0.06 -3.21 16 9 H 0.11 2.90 7.57 -2.39 -0.02 2.88 16 10 C 0.17 4.60 5.18 86.38 0.45 5.04 16 11 N -0.72 -27.72 5.72 -344.63 -1.97 -29.69 16 12 C 0.37 17.79 7.66 133.38 1.02 18.81 16 13 C -0.17 -8.20 10.50 85.07 0.89 -7.30 16 14 N -0.42 -21.31 10.47 -192.23 -2.01 -23.32 16 15 C -0.13 -7.16 10.97 85.28 0.94 -6.22 16 16 C 0.22 12.16 6.54 40.15 0.26 12.42 16 17 C -0.44 -23.63 9.15 23.46 0.21 -23.41 16 18 H 0.10 4.92 7.85 -2.91 -0.02 4.90 16 19 C 0.02 1.13 5.49 85.30 0.47 1.60 16 20 N -0.74 -39.09 11.51 21.84 0.25 -38.84 16 21 Si 0.99 36.89 29.56 68.60 2.03 38.92 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 24 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 25 N -0.54 -30.36 8.10 -186.00 -1.51 -31.87 16 26 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 27 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.14 1.77 8.03 -2.39 -0.02 1.75 16 30 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 1.75 7.93 -2.38 -0.02 1.74 16 32 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 33 H 0.40 15.49 8.52 -92.71 -0.79 14.70 16 34 H 0.15 5.96 6.70 -2.91 -0.02 5.94 16 35 H 0.14 6.83 8.06 -2.91 -0.02 6.81 16 36 H 0.28 13.37 8.29 -92.71 -0.77 12.60 16 Total: -1.00 -70.75 319.62 3.09 -67.66 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.32 Total: 33.81 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 6.17 Total: 6.42 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -5.24 Total: -123.72 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.19 Total: -23.09 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -70.75 3.09 -67.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161044662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.753 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds