Wall clock time and date at job start Mon Mar 30 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99595 * 2 1 4 4 O 1.20826 * 120.00367 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99811 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.54919 * 325.67149 * 5 3 2 7 7 C 1.53001 * 117.51976 * 111.36780 * 5 3 2 8 8 C 1.52999 * 117.50061 * 179.97438 * 5 3 2 9 9 H 1.09000 * 117.49813 * 144.99532 * 8 5 3 10 10 C 1.52996 * 117.49824 * 0.02562 * 8 5 3 11 11 N 1.46497 * 109.47264 * 175.08680 * 10 8 5 12 12 C 1.38824 * 120.00096 * 179.97438 * 11 10 8 13 13 C 1.39968 * 119.97149 * 0.02562 * 12 11 10 14 14 N 1.32127 * 120.31709 * 179.97438 * 13 12 11 15 15 C 1.31928 * 120.27415 * 359.97438 * 14 13 12 16 16 C 1.40683 * 119.93257 * 0.02562 * 15 14 13 17 17 C 1.41276 * 120.15388 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00029 * 353.82251 * 17 16 15 19 19 C 1.40052 * 119.99742 * 173.81777 * 17 16 15 20 20 N 1.30726 * 120.00164 * 6.32727 * 19 17 16 21 21 Si 1.86800 * 119.99812 * 186.32548 * 19 17 16 22 22 H 1.48499 * 109.47065 * 94.98559 * 21 19 17 23 23 H 1.48501 * 109.47154 * 214.98367 * 21 19 17 24 24 H 1.48503 * 109.47470 * 334.98799 * 21 19 17 25 25 N 1.32241 * 119.97302 * 179.72421 * 12 11 10 26 26 H 1.08999 * 109.47045 * 60.00284 * 1 2 3 27 27 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47221 * 300.00071 * 1 2 3 29 29 H 1.09003 * 117.49846 * 359.97438 * 7 5 3 30 30 H 1.08997 * 117.50117 * 214.97267 * 7 5 3 31 31 H 1.09003 * 109.46840 * 295.08324 * 10 8 5 32 32 H 1.09003 * 109.47375 * 55.08335 * 10 8 5 33 33 H 0.97000 * 120.00094 * 0.02562 * 11 10 8 34 34 H 1.08001 * 119.83823 * 359.95206 * 13 12 11 35 35 H 1.08006 * 120.03056 * 179.97438 * 15 14 13 36 36 H 0.97003 * 119.99982 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0780 0.4887 0.5555 7 6 4.2469 1.8055 -1.2629 8 6 4.2007 2.6672 -0.0001 9 1 5.1298 2.7972 0.5549 10 6 3.2587 3.8728 -0.0006 11 7 4.0423 5.1049 0.1171 12 6 3.4012 6.3361 0.1377 13 6 2.0059 6.3994 0.0465 14 7 1.3886 7.5674 0.0660 15 6 2.0822 8.6846 0.1721 16 6 3.4851 8.6338 0.2645 17 6 4.2325 9.8273 0.3777 18 1 3.7385 10.7839 0.2934 19 6 5.6142 9.7698 0.5994 20 7 6.2322 8.6181 0.5783 21 14 6.5739 11.3390 0.9251 22 1 6.7051 11.5439 2.3900 23 1 7.9246 11.2282 0.3180 24 1 5.8551 12.4923 0.3264 25 7 4.1087 7.4477 0.2495 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.6061 2.0971 -2.0951 30 1 5.2063 1.3682 -1.5391 31 1 2.6917 3.8904 -0.9314 32 1 2.5714 3.7974 0.8421 33 1 5.0093 5.0606 0.1799 34 1 1.4312 5.4892 -0.0405 35 1 1.5736 9.6373 0.1872 36 1 7.1892 8.5782 0.7323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161044676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:15 Heat of formation + Delta-G solvation = -29.927983 kcal Electronic energy + Delta-G solvation = -20691.615318 eV Core-core repulsion = 17369.158858 eV Total energy + Delta-G solvation = -3322.456460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78865 -40.78467 -38.96603 -37.22318 -36.27480 -35.69580 -33.46574 -31.23947 -29.17359 -27.80162 -27.34351 -25.33952 -24.33587 -23.00557 -22.22851 -21.22729 -19.46833 -18.80435 -18.32817 -17.51568 -17.29007 -17.11057 -16.74927 -16.48494 -16.06618 -15.55548 -15.12609 -14.81737 -14.49218 -14.34437 -14.23974 -13.70443 -13.28007 -13.25065 -12.97209 -12.93713 -12.55091 -12.43136 -11.98692 -11.92334 -11.81323 -11.60897 -11.56287 -11.38019 -11.36671 -11.02566 -10.20512 -9.33211 -8.48370 -8.32831 -6.63897 0.83525 1.01263 1.24542 1.43802 1.57453 1.59202 1.65597 2.22769 2.38107 2.75793 2.84182 3.54993 3.70567 3.75005 3.90148 3.97377 4.19301 4.28739 4.30246 4.31295 4.44350 4.52705 4.65981 4.70186 4.80715 4.83709 4.91037 4.95824 5.12899 5.16211 5.23846 5.37591 5.71295 6.10633 6.22497 6.65268 6.67856 6.73904 7.03135 7.45262 8.06895 8.36453 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031534 B = 0.003715 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.715367 B = 7534.505454 C = 8297.058257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.480 3.520 4 O -0.532 6.532 5 C -0.151 4.151 6 H 0.174 0.826 7 C -0.123 4.123 8 C -0.140 4.140 9 H 0.145 0.855 10 C 0.179 3.821 11 N -0.719 5.719 12 C 0.368 3.632 13 C -0.181 4.181 14 N -0.419 5.419 15 C -0.133 4.133 16 C 0.215 3.785 17 C -0.439 4.439 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.741 5.741 21 Si 0.996 3.004 22 H -0.264 1.264 23 H -0.266 1.266 24 H -0.252 1.252 25 N -0.537 5.537 26 H 0.058 0.942 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.149 0.851 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.399 0.601 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -16.983 -1.065 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.325 3.675 4 O -0.421 6.421 5 C -0.170 4.170 6 H 0.191 0.809 7 C -0.160 4.160 8 C -0.158 4.158 9 H 0.162 0.838 10 C 0.056 3.944 11 N -0.356 5.356 12 C 0.123 3.877 13 C -0.343 4.343 14 N -0.131 5.131 15 C -0.302 4.302 16 C 0.087 3.913 17 C -0.472 4.472 18 H 0.120 0.880 19 C -0.201 4.201 20 N -0.362 5.362 21 Si 0.816 3.184 22 H -0.189 1.189 23 H -0.190 1.190 24 H -0.175 1.175 25 N -0.265 5.265 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.166 0.834 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.235 0.765 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.815 -17.023 -1.079 17.076 hybrid contribution 0.017 0.638 0.222 0.675 sum 0.832 -16.385 -0.857 16.428 Atomic orbital electron populations 1.23533 0.74938 1.05702 1.02295 1.86468 1.24721 1.32482 1.83687 1.23275 0.91549 0.81183 0.71514 1.90757 1.67920 1.37125 1.46319 1.21982 0.86997 1.00369 1.07619 0.80891 1.23343 1.03199 0.99637 0.89840 1.22555 1.00824 0.88468 1.03978 0.83781 1.20794 0.92090 0.81146 1.00409 1.44293 1.08670 1.01347 1.81265 1.19783 0.89874 0.88484 0.89601 1.22221 0.91561 0.95708 1.24841 1.67481 1.40648 0.98925 1.06048 1.23117 0.92812 0.96000 1.18297 1.19558 0.90667 0.92130 0.88960 1.20068 0.93495 0.92814 1.40787 0.88027 1.27124 0.98747 1.01382 0.92882 1.70190 1.10605 1.27942 1.27435 0.84986 0.77293 0.76908 0.79262 1.18893 1.19029 1.17528 1.69070 1.35658 0.96282 1.25504 0.92319 0.84667 0.92395 0.88875 0.83356 0.93641 0.93170 0.76520 0.85016 0.83881 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.28 10.57 -51.43 -0.54 -7.82 16 3 C 0.48 11.59 7.72 71.24 0.55 12.14 16 4 O -0.53 -17.11 12.86 21.96 0.28 -16.83 16 5 C -0.15 -2.67 6.30 -11.54 -0.07 -2.75 16 6 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 7 C -0.12 -2.04 9.88 30.58 0.30 -1.74 16 8 C -0.14 -3.12 5.84 -10.81 -0.06 -3.18 16 9 H 0.14 2.70 8.04 -2.39 -0.02 2.68 16 10 C 0.18 6.12 3.44 86.38 0.30 6.42 16 11 N -0.72 -29.87 5.72 -344.62 -1.97 -31.84 16 12 C 0.37 19.34 7.66 133.38 1.02 20.37 16 13 C -0.18 -9.70 10.50 85.07 0.89 -8.81 16 14 N -0.42 -23.46 10.47 -192.22 -2.01 -25.47 16 15 C -0.13 -7.43 10.97 85.28 0.94 -6.49 16 16 C 0.21 12.50 6.54 40.15 0.26 12.77 16 17 C -0.44 -23.76 9.15 23.46 0.21 -23.55 16 18 H 0.10 5.04 7.85 -2.91 -0.02 5.01 16 19 C 0.02 1.11 5.49 85.30 0.47 1.58 16 20 N -0.74 -38.68 11.51 21.84 0.25 -38.43 16 21 Si 1.00 36.74 29.56 68.60 2.03 38.77 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 23 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 24 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 25 N -0.54 -31.05 8.10 -186.00 -1.51 -32.56 16 26 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 27 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.09 1.80 8.03 -2.39 -0.02 1.78 16 30 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.69 7.09 -2.39 -0.02 1.68 16 32 H 0.05 1.93 6.73 -2.39 -0.02 1.91 16 33 H 0.40 15.60 8.53 -92.71 -0.79 14.81 16 34 H 0.13 6.65 6.70 -2.91 -0.02 6.63 16 35 H 0.14 7.25 8.06 -2.91 -0.02 7.23 16 36 H 0.28 13.15 8.29 -92.71 -0.77 12.38 16 Total: -1.00 -73.71 314.17 2.86 -70.84 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.33 Total: 34.94 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.01 Total: 8.40 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.24 Total: -128.30 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.26 Total: -24.65 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -73.71 2.86 -70.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161044676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.916 kcal (2) G-P(sol) polarization free energy of solvation -73.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds