Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35622 * 116.99435 * 2 1 4 4 C 1.39152 * 120.50742 * 359.97422 * 3 2 1 5 5 C 1.38312 * 118.63138 * 180.02562 * 4 3 2 6 6 C 1.39935 * 119.58955 * 0.02562 * 5 4 3 7 7 N 1.38910 * 119.49329 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99552 * 359.78644 * 7 6 5 9 9 C 1.50701 * 115.55289 * 289.97267 * 8 7 6 10 10 N 1.34783 * 119.99708 * 326.36840 * 9 8 7 11 11 O 1.21278 * 120.00430 * 146.36659 * 9 8 7 12 12 C 1.53002 * 117.49860 * 144.30632 * 8 7 6 13 13 C 1.52995 * 117.50232 * 75.64797 * 8 7 6 14 14 N 1.31866 * 121.01498 * 0.02562 * 6 5 4 15 15 C 1.33823 * 121.46939 * 359.97438 * 14 6 5 16 16 C 1.40918 * 119.84802 * 180.02562 * 15 14 6 17 17 H 1.07994 * 119.99945 * 180.02562 * 16 15 14 18 18 C 1.40022 * 119.99809 * 0.02562 * 16 15 14 19 19 N 1.30781 * 120.00263 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47162 * 59.99604 * 20 18 16 22 22 H 1.48490 * 109.47263 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46902 * 299.99982 * 20 18 16 24 24 H 1.08996 * 109.46593 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47087 * 300.00011 * 1 2 3 26 26 H 1.09000 * 109.46852 * 60.00556 * 1 2 3 27 27 H 1.08005 * 120.68269 * 0.04729 * 4 3 2 28 28 H 1.07990 * 120.20099 * 180.02562 * 5 4 3 29 29 H 0.96995 * 120.00378 * 179.78924 * 7 6 5 30 30 H 0.97001 * 119.99853 * 355.82574 * 10 9 8 31 31 H 0.97001 * 119.99915 * 175.82578 * 10 9 8 32 32 H 1.09002 * 117.49623 * 359.97438 * 12 8 7 33 33 H 1.08995 * 117.50035 * 145.01807 * 12 8 7 34 34 H 1.09003 * 117.50430 * 214.97849 * 13 8 7 35 35 H 1.09007 * 117.49934 * 359.97249 * 13 8 7 36 36 H 0.97000 * 119.99858 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2085 0.0000 4 6 1.2970 2.3821 -0.0005 5 6 1.9648 3.5933 -0.0011 6 6 3.3641 3.6109 -0.0016 7 7 4.0327 4.8284 -0.0016 8 6 3.2731 6.0811 -0.0057 9 6 2.5427 6.3942 -1.2862 10 7 3.0696 6.0242 -2.4703 11 8 1.4808 6.9789 -1.2512 12 6 3.8471 7.2579 0.7859 13 6 2.6154 6.5129 1.3064 14 7 4.0576 2.4893 -0.0021 15 6 3.4543 1.2948 -0.0016 16 6 4.2291 0.1178 -0.0016 17 1 3.7448 -0.8475 -0.0017 18 6 5.6270 0.1998 -0.0016 19 7 6.2135 1.3687 -0.0021 20 14 6.6541 -1.3605 -0.0023 21 1 6.3415 -2.1584 -1.2151 22 1 8.0956 -1.0042 -0.0016 23 1 6.3416 -2.1595 1.2099 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2175 2.3479 -0.0002 28 1 1.4098 4.5196 -0.0011 29 1 5.0024 4.8492 0.0012 30 1 3.9466 5.6109 -2.5030 31 1 2.5719 6.1713 -3.2898 32 1 4.7896 7.0999 1.3102 33 1 3.6960 8.2585 0.3808 34 1 1.6545 7.0237 1.2436 35 1 2.7474 5.8647 2.1728 36 1 7.1818 1.4254 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162543347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = -2.735562 kcal Electronic energy + Delta-G solvation = -21639.306661 eV Core-core repulsion = 18318.029353 eV Total energy + Delta-G solvation = -3321.277308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91351 -38.68969 -37.06572 -36.09391 -33.83000 -33.36426 -31.94157 -30.30018 -28.43124 -26.41338 -25.12930 -24.09247 -22.43860 -21.40419 -20.90808 -19.31021 -17.76294 -17.04834 -16.72036 -16.56510 -16.40106 -15.07242 -14.80859 -14.62393 -14.54383 -14.39301 -13.94995 -13.28685 -12.87904 -12.66010 -12.51123 -12.32334 -11.63679 -11.39457 -11.27838 -11.22711 -10.92085 -10.78108 -10.60400 -10.44994 -10.16454 -9.86698 -9.81942 -9.43384 -9.42705 -8.52039 -8.04118 -7.72326 -6.41545 -6.39880 -4.37272 2.68203 2.81931 3.08532 3.09528 3.13591 3.25189 3.62275 3.73334 3.97335 4.16176 4.59872 4.76719 4.99391 5.06508 5.09465 5.62823 5.66733 5.80731 5.81474 5.97109 5.99392 6.08820 6.10875 6.26437 6.42494 6.65117 6.75243 6.97450 7.17783 7.25892 7.43114 7.58818 7.70008 8.12336 8.24801 8.36433 8.50857 8.58914 8.76686 9.13828 10.11717 10.31703 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.006231 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.921268 B = 4492.274415 C = 5564.911610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.072 4.072 4 C -0.115 4.115 5 C -0.333 4.333 6 C 0.389 3.611 7 N -0.702 5.702 8 C 0.089 3.911 9 C 0.557 3.443 10 N -0.841 5.841 11 O -0.553 6.553 12 C -0.153 4.153 13 C -0.146 4.146 14 N -0.508 5.508 15 C 0.288 3.712 16 C -0.413 4.413 17 H 0.090 0.910 18 C 0.069 3.931 19 N -0.716 5.716 20 Si 0.908 3.092 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.402 0.598 30 H 0.406 0.594 31 H 0.398 0.602 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 6.229 -0.955 6.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.225 6.225 3 C -0.120 4.120 4 C -0.139 4.139 5 C -0.359 4.359 6 C 0.153 3.847 7 N -0.341 5.341 8 C -0.005 4.005 9 C 0.340 3.660 10 N -0.403 5.403 11 O -0.430 6.430 12 C -0.191 4.191 13 C -0.185 4.185 14 N -0.230 5.230 15 C 0.159 3.841 16 C -0.445 4.445 17 H 0.108 0.892 18 C -0.156 4.156 19 N -0.338 5.338 20 Si 0.733 3.267 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.189 1.189 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.238 0.762 30 H 0.235 0.765 31 H 0.228 0.772 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.833 6.611 -0.757 6.706 hybrid contribution -0.205 -0.682 -0.423 0.829 sum -1.038 5.928 -1.181 6.133 Atomic orbital electron populations 1.22692 0.82107 1.01532 0.99721 1.85918 1.17906 1.27864 1.90845 1.20045 0.93436 0.83131 1.15399 1.20701 0.97395 0.92326 1.03518 1.20435 0.92857 0.96542 1.26110 1.18370 0.87647 0.86193 0.92513 1.43270 1.06984 0.99577 1.84257 1.20089 1.01420 0.87906 0.91131 1.19847 0.84447 0.76733 0.84999 1.43640 1.23598 1.64703 1.08342 1.90692 1.22355 1.42536 1.87432 1.23294 0.99333 0.94778 1.01738 1.23338 0.97251 1.01922 0.96013 1.68330 1.34719 0.94838 1.25149 1.17722 0.84988 0.90923 0.90428 1.19490 0.90528 0.93095 1.41385 0.89157 1.26057 0.98713 0.97159 0.93686 1.70142 1.10237 1.24472 1.28954 0.86376 0.78261 0.82125 0.79982 1.18955 1.20389 1.18946 0.90141 0.94443 0.94480 0.88278 0.88676 0.76175 0.76535 0.77201 0.87430 0.87864 0.87398 0.87512 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.30 9.61 -18.56 -0.18 -7.48 16 3 C -0.07 -1.84 6.74 -38.10 -0.26 -2.09 16 4 C -0.11 -2.70 9.12 -39.22 -0.36 -3.05 16 5 C -0.33 -7.72 8.92 -38.92 -0.35 -8.07 16 6 C 0.39 9.02 7.59 -155.26 -1.18 7.84 16 7 N -0.70 -12.98 5.21 -48.74 -0.25 -13.24 16 8 C 0.09 1.42 1.66 -132.97 -0.22 1.20 16 9 C 0.56 9.39 6.44 -10.98 -0.07 9.32 16 10 N -0.84 -11.82 8.82 31.22 0.28 -11.54 16 11 O -0.55 -10.79 17.10 5.56 0.10 -10.69 16 12 C -0.15 -1.91 10.16 -26.70 -0.27 -2.19 16 13 C -0.15 -2.18 9.30 -26.70 -0.25 -2.43 16 14 N -0.51 -13.34 7.88 -10.20 -0.08 -13.42 16 15 C 0.29 7.87 6.56 -84.85 -0.56 7.31 16 16 C -0.41 -11.11 8.94 -37.90 -0.34 -11.45 16 17 H 0.09 2.38 7.31 -52.49 -0.38 1.99 16 18 C 0.07 1.72 5.50 -17.33 -0.10 1.62 16 19 N -0.72 -18.15 11.45 55.55 0.64 -17.51 16 20 Si 0.91 18.49 29.56 -169.99 -5.02 13.47 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.10 2.08 6.43 -52.48 -0.34 1.74 16 28 H 0.10 2.15 5.83 -52.49 -0.31 1.84 16 29 H 0.40 7.16 8.95 -40.82 -0.37 6.79 16 30 H 0.41 5.35 8.52 -40.82 -0.35 5.00 16 31 H 0.40 4.87 8.93 -40.82 -0.36 4.51 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.11 1.61 7.67 -51.93 -0.40 1.21 16 35 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.27 6.23 8.29 -40.82 -0.34 5.89 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -31.31 311.59 -6.91 -38.22 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -4.13 Total: 17.87 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.95 Total: -0.37 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.58 Total: -55.71 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.08 Total: -18.17 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.31 -6.91 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162543347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.485 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds