Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35622 * 116.99435 * 2 1 4 4 C 1.39152 * 120.50742 * 359.97422 * 3 2 1 5 5 C 1.38312 * 118.63138 * 180.02562 * 4 3 2 6 6 C 1.39935 * 119.58955 * 0.02562 * 5 4 3 7 7 N 1.38910 * 119.49329 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99552 * 359.78644 * 7 6 5 9 9 C 1.50701 * 115.55289 * 289.97267 * 8 7 6 10 10 N 1.34783 * 119.99708 * 326.36840 * 9 8 7 11 11 O 1.21278 * 120.00430 * 146.36659 * 9 8 7 12 12 C 1.53002 * 117.49860 * 144.30632 * 8 7 6 13 13 C 1.52995 * 117.50232 * 75.64797 * 8 7 6 14 14 N 1.31866 * 121.01498 * 0.02562 * 6 5 4 15 15 C 1.33823 * 121.46939 * 359.97438 * 14 6 5 16 16 C 1.40918 * 119.84802 * 180.02562 * 15 14 6 17 17 H 1.07994 * 119.99945 * 180.02562 * 16 15 14 18 18 C 1.40022 * 119.99809 * 0.02562 * 16 15 14 19 19 N 1.30781 * 120.00263 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47162 * 59.99604 * 20 18 16 22 22 H 1.48490 * 109.47263 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46902 * 299.99982 * 20 18 16 24 24 H 1.08996 * 109.46593 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47087 * 300.00011 * 1 2 3 26 26 H 1.09000 * 109.46852 * 60.00556 * 1 2 3 27 27 H 1.08005 * 120.68269 * 0.04729 * 4 3 2 28 28 H 1.07990 * 120.20099 * 180.02562 * 5 4 3 29 29 H 0.96995 * 120.00378 * 179.78924 * 7 6 5 30 30 H 0.97001 * 119.99853 * 355.82574 * 10 9 8 31 31 H 0.97001 * 119.99915 * 175.82578 * 10 9 8 32 32 H 1.09002 * 117.49623 * 359.97438 * 12 8 7 33 33 H 1.08995 * 117.50035 * 145.01807 * 12 8 7 34 34 H 1.09003 * 117.50430 * 214.97849 * 13 8 7 35 35 H 1.09007 * 117.49934 * 359.97249 * 13 8 7 36 36 H 0.97000 * 119.99858 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2085 0.0000 4 6 1.2970 2.3821 -0.0005 5 6 1.9648 3.5933 -0.0011 6 6 3.3641 3.6109 -0.0016 7 7 4.0327 4.8284 -0.0016 8 6 3.2731 6.0811 -0.0057 9 6 2.5427 6.3942 -1.2862 10 7 3.0696 6.0242 -2.4703 11 8 1.4808 6.9789 -1.2512 12 6 3.8471 7.2579 0.7859 13 6 2.6154 6.5129 1.3064 14 7 4.0576 2.4893 -0.0021 15 6 3.4543 1.2948 -0.0016 16 6 4.2291 0.1178 -0.0016 17 1 3.7448 -0.8475 -0.0017 18 6 5.6270 0.1998 -0.0016 19 7 6.2135 1.3687 -0.0021 20 14 6.6541 -1.3605 -0.0023 21 1 6.3415 -2.1584 -1.2151 22 1 8.0956 -1.0042 -0.0016 23 1 6.3416 -2.1595 1.2099 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2175 2.3479 -0.0002 28 1 1.4098 4.5196 -0.0011 29 1 5.0024 4.8492 0.0012 30 1 3.9466 5.6109 -2.5030 31 1 2.5719 6.1713 -3.2898 32 1 4.7896 7.0999 1.3102 33 1 3.6960 8.2585 0.3808 34 1 1.6545 7.0237 1.2436 35 1 2.7474 5.8647 2.1728 36 1 7.1818 1.4254 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162543347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = -26.170320 kcal Electronic energy + Delta-G solvation = -21640.322868 eV Core-core repulsion = 18318.029353 eV Total energy + Delta-G solvation = -3322.293515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29526 -40.41228 -38.64816 -37.57821 -35.58059 -34.69960 -33.51600 -32.16936 -30.15101 -28.01670 -26.90790 -25.40828 -23.71915 -23.09936 -22.58096 -20.70124 -19.42924 -18.51361 -18.31488 -18.13347 -17.96763 -16.63290 -16.46139 -16.24072 -16.00308 -15.69536 -15.34654 -14.86939 -14.53849 -14.24872 -14.12502 -13.95066 -13.32521 -12.91893 -12.90215 -12.54026 -12.48079 -12.37256 -12.10681 -11.99203 -11.61343 -11.56728 -11.23211 -11.10923 -10.67507 -10.15193 -9.91376 -9.60106 -8.25870 -8.16394 -6.31139 0.98485 1.23887 1.40276 1.44988 1.55605 1.60108 2.23853 2.28665 2.51008 2.87288 2.94123 3.02142 3.76323 3.84651 3.93916 4.02601 4.23451 4.43499 4.48923 4.49976 4.62610 4.65451 4.73631 4.91181 4.91716 4.94159 5.16543 5.33253 5.48766 5.66429 5.80251 5.87694 6.27289 6.31406 6.41390 6.66841 6.82828 6.96992 7.26014 7.31720 8.25651 8.49038 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.006231 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.921268 B = 4492.274415 C = 5564.911610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.336 6.336 3 C -0.094 4.094 4 C -0.116 4.116 5 C -0.335 4.335 6 C 0.386 3.614 7 N -0.688 5.688 8 C 0.063 3.937 9 C 0.553 3.447 10 N -0.829 5.829 11 O -0.583 6.583 12 C -0.114 4.114 13 C -0.154 4.154 14 N -0.531 5.531 15 C 0.254 3.746 16 C -0.448 4.448 17 H 0.082 0.918 18 C 0.029 3.971 19 N -0.741 5.741 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.264 1.264 23 H -0.264 1.264 24 H 0.113 0.887 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.405 0.595 30 H 0.411 0.589 31 H 0.407 0.593 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 6.722 -0.932 6.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.250 6.250 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.361 4.361 6 C 0.148 3.852 7 N -0.326 5.326 8 C -0.030 4.030 9 C 0.336 3.664 10 N -0.391 5.391 11 O -0.464 6.464 12 C -0.152 4.152 13 C -0.193 4.193 14 N -0.254 5.254 15 C 0.126 3.874 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.194 4.194 19 N -0.364 5.364 20 Si 0.803 3.197 21 H -0.188 1.188 22 H -0.188 1.188 23 H -0.189 1.189 24 H 0.131 0.869 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.140 0.860 28 H 0.119 0.881 29 H 0.242 0.758 30 H 0.241 0.759 31 H 0.238 0.762 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.261 7.141 -0.755 7.185 hybrid contribution -0.484 -0.741 -0.441 0.989 sum -0.745 6.399 -1.196 6.553 Atomic orbital electron populations 1.23010 0.79223 1.04011 1.00397 1.85855 1.20918 1.27275 1.90963 1.20089 0.93348 0.84301 1.16430 1.20988 0.98602 0.91921 1.02594 1.20580 0.93114 0.96686 1.25720 1.18631 0.88024 0.86978 0.91576 1.43193 1.07148 0.99054 1.83217 1.20289 1.03099 0.88190 0.91410 1.19980 0.84096 0.76517 0.85760 1.43570 1.23711 1.63592 1.08197 1.90678 1.23554 1.44226 1.87893 1.23461 0.98837 0.94160 0.98709 1.23322 0.98574 1.02550 0.94876 1.68312 1.35567 0.95362 1.26137 1.18153 0.86409 0.91701 0.91183 1.19686 0.91960 0.92877 1.43483 0.89974 1.26831 0.99054 1.00606 0.92860 1.70188 1.10988 1.26326 1.28856 0.85268 0.76956 0.77728 0.79762 1.18765 1.18809 1.18870 0.86895 0.93629 0.93715 0.86020 0.88062 0.75756 0.75925 0.76155 0.85465 0.85726 0.87553 0.88331 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.83 113.37 1.11 2.10 16 2 O -0.34 -15.90 9.61 -89.34 -0.86 -16.76 16 3 C -0.09 -4.85 6.74 23.23 0.16 -4.70 16 4 C -0.12 -5.47 9.12 22.51 0.21 -5.26 16 5 C -0.33 -15.48 8.92 22.70 0.20 -15.28 16 6 C 0.39 17.91 7.59 133.45 1.01 18.93 16 7 N -0.69 -24.90 5.21 -308.12 -1.61 -26.51 16 8 C 0.06 1.93 1.66 2.86 0.00 1.93 16 9 C 0.55 17.96 6.44 87.66 0.56 18.53 16 10 N -0.83 -22.31 8.82 -173.53 -1.53 -23.84 16 11 O -0.58 -22.19 17.10 -3.02 -0.05 -22.24 16 12 C -0.11 -2.51 10.16 30.62 0.31 -2.20 16 13 C -0.15 -4.38 9.30 30.62 0.28 -4.10 16 14 N -0.53 -28.36 7.88 -186.18 -1.47 -29.82 16 15 C 0.25 14.27 6.56 40.23 0.26 14.54 16 16 C -0.45 -24.80 8.94 23.36 0.21 -24.59 16 17 H 0.08 4.49 7.31 -2.91 -0.02 4.47 16 18 C 0.03 1.46 5.50 85.28 0.47 1.93 16 19 N -0.74 -37.84 11.45 21.84 0.25 -37.59 16 20 Si 0.98 37.99 29.56 68.60 2.03 40.02 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 23 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 24 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 25 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 26 H 0.04 1.43 7.69 -2.39 -0.02 1.41 16 27 H 0.12 4.99 6.43 -2.91 -0.02 4.97 16 28 H 0.10 4.52 5.83 -2.92 -0.02 4.50 16 29 H 0.41 14.07 8.95 -92.71 -0.83 13.24 16 30 H 0.41 10.36 8.52 -92.71 -0.79 9.57 16 31 H 0.41 9.50 8.93 -92.71 -0.83 8.67 16 32 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.11 3.06 7.67 -2.39 -0.02 3.04 16 35 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 36 H 0.28 12.79 8.29 -92.71 -0.77 12.02 16 Total: -1.00 -68.74 311.59 0.28 -68.46 By element: Atomic # 1 Polarization: 47.74 SS G_CDS: -1.29 Total: 46.46 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 4.80 Total: 1.82 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -4.35 Total: -117.76 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.91 Total: -38.99 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -68.74 0.28 -68.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162543347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.289 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds