Wall clock time and date at job start Mon Mar 30 2020 01:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.46960 * 2 1 4 4 C 1.34227 * 116.99626 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00350 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99846 * 180.02562 * 4 3 2 7 7 C 1.50699 * 109.47313 * 185.08710 * 6 4 3 8 8 N 1.29286 * 120.00695 * 103.19375 * 7 6 4 9 9 N 1.37300 * 119.99930 * 283.19061 * 7 6 4 10 10 C 1.38413 * 120.00239 * 179.97438 * 9 7 6 11 11 N 1.32228 * 119.89687 * 0.02562 * 10 9 7 12 12 C 1.31944 * 121.87258 * 180.02562 * 11 10 9 13 13 C 1.38710 * 121.44490 * 359.97438 * 12 11 10 14 14 C 1.37982 * 119.61146 * 0.25637 * 13 12 11 15 15 C 1.41038 * 118.27324 * 359.48660 * 14 13 12 16 16 C 1.41037 * 120.70405 * 180.26056 * 15 14 13 17 17 H 1.07995 * 119.99725 * 208.98137 * 16 15 14 18 18 C 1.39957 * 119.99713 * 28.98469 * 16 15 14 19 19 N 1.30861 * 120.00343 * 10.80121 * 18 16 15 20 20 Si 1.86793 * 119.99601 * 190.80786 * 18 16 15 21 21 H 1.48499 * 109.47656 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47474 * 120.00057 * 20 18 16 23 23 H 1.48503 * 109.47247 * 239.99792 * 20 18 16 24 24 H 1.08991 * 109.47344 * 59.99432 * 1 2 3 25 25 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47102 * 299.99406 * 1 2 3 27 27 H 1.09002 * 109.46621 * 240.00501 * 2 1 3 28 28 H 1.09001 * 109.47250 * 120.00489 * 2 1 3 29 29 H 1.09001 * 109.47648 * 65.08495 * 6 4 3 30 30 H 1.09007 * 109.47302 * 305.08009 * 6 4 3 31 31 H 0.97010 * 119.99804 * 354.95329 * 8 7 6 32 32 H 0.97005 * 119.99377 * 0.02562 * 9 7 6 33 33 H 1.08002 * 119.28089 * 180.02562 * 12 11 10 34 34 H 1.07996 * 120.19622 * 179.97438 * 13 12 11 35 35 H 1.07998 * 120.86604 * 179.74683 * 14 13 12 36 36 H 0.96994 * 119.99783 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9373 0.0000 7 6 5.4204 2.8607 -0.1267 8 7 5.9877 3.1205 -1.2591 9 7 6.1844 2.5151 0.9604 10 6 7.5618 2.4441 0.8439 11 7 8.1398 2.7102 -0.3152 12 6 9.4489 2.6540 -0.4701 13 6 10.2878 2.3121 0.5803 14 6 9.7484 2.0178 1.8157 15 6 8.3479 2.0877 1.9670 16 6 7.7425 1.8027 3.2085 17 1 6.7400 1.4025 3.2412 18 6 8.4411 2.0387 4.3981 19 7 9.5616 2.7143 4.3760 20 14 7.7739 1.3891 6.0174 21 1 6.5013 0.6638 5.7733 22 1 8.7633 0.4630 6.6246 23 1 7.5264 2.5245 6.9420 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.6600 3.4381 0.9324 30 1 3.5134 3.4994 -0.8405 31 1 5.4456 3.2929 -2.0449 32 1 5.7588 2.3198 1.8099 33 1 9.8767 2.8801 -1.4357 34 1 11.3567 2.2719 0.4308 35 1 10.3824 1.7452 2.6464 36 1 10.0458 2.8774 5.2005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163438595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:04 Heat of formation + Delta-G solvation = -39.253064 kcal Electronic energy + Delta-G solvation = -20985.701763 eV Core-core repulsion = 17662.840938 eV Total energy + Delta-G solvation = -3322.860826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.66877 -40.51878 -38.41941 -37.39477 -35.83445 -34.13168 -32.75176 -32.28259 -30.81392 -30.16728 -27.29983 -24.65099 -23.89501 -23.10750 -22.29813 -20.89159 -19.15764 -18.86816 -18.68889 -17.83331 -17.45127 -17.16769 -16.57696 -15.81792 -15.59738 -15.32875 -15.23539 -14.97511 -14.55261 -14.31180 -13.82728 -13.63553 -13.43430 -13.20193 -13.15652 -12.86822 -12.73863 -12.70411 -12.49926 -12.20271 -11.65887 -11.63082 -11.54609 -11.16958 -10.36146 -10.26639 -9.86579 -9.23368 -8.65669 -8.42631 -6.26338 0.78535 1.09905 1.12276 1.41110 1.42326 1.54076 1.55983 2.19338 2.22646 2.44503 2.85784 3.45238 3.81096 3.87869 3.98832 4.08720 4.09146 4.32016 4.35167 4.48377 4.62268 4.71388 4.84616 4.89247 4.93327 5.13040 5.13751 5.22740 5.32727 5.41945 5.82327 5.87119 6.07617 6.34635 6.51905 6.66305 6.73811 6.85932 7.05816 7.73970 8.07623 8.38666 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.005520 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.639824 B = 5071.649482 C = 6576.848853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.467 3.533 5 O -0.532 6.532 6 C -0.110 4.110 7 C 0.396 3.604 8 N -0.724 5.724 9 N -0.617 5.617 10 C 0.247 3.753 11 N -0.458 5.458 12 C -0.017 4.017 13 C -0.181 4.181 14 C -0.147 4.147 15 C 0.020 3.980 16 C -0.483 4.483 17 H 0.081 0.919 18 C 0.036 3.964 19 N -0.831 5.831 20 Si 0.984 3.016 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.266 1.266 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.337 0.663 32 H 0.420 0.580 33 H 0.144 0.856 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 -1.366 -2.418 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.310 3.690 5 O -0.421 6.421 6 C -0.151 4.151 7 C 0.111 3.889 8 N -0.352 5.352 9 N -0.250 5.250 10 C 0.012 3.988 11 N -0.171 5.171 12 C -0.174 4.174 13 C -0.202 4.202 14 C -0.174 4.174 15 C 0.013 3.987 16 C -0.514 4.514 17 H 0.099 0.901 18 C -0.178 4.178 19 N -0.458 5.458 20 Si 0.805 3.195 21 H -0.179 1.179 22 H -0.195 1.195 23 H -0.191 1.191 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.154 0.846 32 H 0.258 0.742 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.257 -1.250 -3.400 15.681 hybrid contribution -0.246 -0.673 1.529 1.689 sum -15.503 -1.923 -1.870 15.733 Atomic orbital electron populations 1.21814 0.89890 1.04368 1.03969 1.23304 0.97350 0.79264 1.02328 1.86490 1.23189 1.33603 1.83748 1.23711 0.80946 0.92452 0.71922 1.90781 1.61207 1.44264 1.45864 1.21603 0.90637 0.92052 1.10855 1.21188 0.87486 0.91722 0.88494 1.69482 1.41734 1.23999 1.00035 1.41167 1.02682 1.69457 1.11670 1.18725 0.84939 1.03935 0.91231 1.67142 1.11989 1.15057 1.22955 1.22170 0.88512 1.07894 0.98782 1.21838 1.00127 1.03869 0.94406 1.21449 0.95031 1.04417 0.96468 1.18322 0.92940 0.94408 0.93011 1.19454 1.02107 1.39527 0.90351 0.90062 1.26678 0.94424 0.92419 1.04305 1.69855 1.15045 1.29721 1.31195 0.85122 0.79380 0.78755 0.76254 1.17913 1.19493 1.19095 0.90932 0.88394 0.90959 0.91770 0.91706 0.82781 0.82454 0.84606 0.74173 0.83881 0.85905 0.86707 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.99 6.19 71.98 0.45 1.43 16 3 O -0.35 -7.95 10.22 -51.39 -0.53 -8.47 16 4 C 0.47 12.88 7.94 71.23 0.57 13.45 16 5 O -0.53 -19.77 15.78 21.98 0.35 -19.42 16 6 C -0.11 -2.56 6.19 29.10 0.18 -2.38 16 7 C 0.40 14.54 6.41 137.74 0.88 15.42 16 8 N -0.72 -29.05 11.34 -49.69 -0.56 -29.62 16 9 N -0.62 -26.77 5.38 -182.37 -0.98 -27.76 16 10 C 0.25 12.87 7.48 133.94 1.00 13.87 16 11 N -0.46 -23.92 7.67 -191.28 -1.47 -25.39 16 12 C -0.02 -0.85 11.17 84.79 0.95 0.10 16 13 C -0.18 -8.79 10.08 22.32 0.22 -8.57 16 14 C -0.15 -7.90 8.76 22.90 0.20 -7.70 16 15 C 0.02 1.09 5.57 -21.07 -0.12 0.97 16 16 C -0.48 -24.89 8.45 23.37 0.20 -24.70 16 17 H 0.08 3.93 6.79 -2.91 -0.02 3.91 16 18 C 0.04 1.74 5.27 85.25 0.45 2.19 16 19 N -0.83 -42.56 10.90 21.83 0.24 -42.32 16 20 Si 0.98 36.84 29.57 68.60 2.03 38.87 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.16 2.55 7.98 -2.38 -0.02 2.53 16 31 H 0.34 11.16 8.64 -92.70 -0.80 10.36 16 32 H 0.42 16.80 7.00 -92.70 -0.65 16.15 16 33 H 0.14 6.11 8.06 -2.91 -0.02 6.09 16 34 H 0.12 5.13 8.06 -2.91 -0.02 5.10 16 35 H 0.12 6.32 6.34 -2.91 -0.02 6.30 16 36 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 Total: -1.00 -71.48 315.99 4.48 -67.01 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.32 Total: 43.96 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.72 Total: 3.14 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -2.77 Total: -125.08 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.18 Total: -27.89 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -71.48 4.48 -67.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163438595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.754 kcal (2) G-P(sol) polarization free energy of solvation -71.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds