Wall clock time and date at job start Mon Mar 30 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99657 * 2 1 4 4 C 1.52991 * 109.47290 * 125.00407 * 3 2 1 5 5 H 1.08999 * 109.47152 * 304.99942 * 4 3 2 6 6 N 1.46506 * 109.47417 * 64.99871 * 4 3 2 7 7 C 1.37937 * 119.99771 * 275.00455 * 6 4 3 8 8 N 1.32616 * 120.23992 * 0.02562 * 7 6 4 9 9 C 1.32248 * 120.08705 * 179.97438 * 8 7 6 10 10 C 1.38961 * 120.57015 * 359.97438 * 9 8 7 11 11 N 1.31724 * 120.47418 * 0.02562 * 10 9 8 12 12 C 1.33907 * 119.89503 * 0.02562 * 11 10 9 13 13 C 1.40821 * 120.27624 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00008 * 179.97438 * 13 12 11 15 15 C 1.40122 * 120.00097 * 0.02562 * 13 12 11 16 16 N 1.30733 * 119.99632 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00108 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47237 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47075 * 120.00023 * 17 15 13 20 20 H 1.48500 * 109.47184 * 239.99528 * 17 15 13 21 21 C 1.50696 * 109.47473 * 184.99928 * 4 3 2 22 22 O 1.20824 * 120.00132 * 239.99811 * 21 4 3 23 23 O 1.34228 * 119.99850 * 59.99946 * 21 4 3 24 24 C 1.45199 * 117.00111 * 180.02562 * 23 21 4 25 25 H 1.08007 * 119.99651 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00269 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00269 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47329 * 5.00206 * 3 2 1 29 29 H 1.09005 * 109.47305 * 245.00227 * 3 2 1 30 30 H 0.96993 * 120.00019 * 95.00041 * 6 4 3 31 31 H 1.08000 * 119.71555 * 180.02562 * 9 8 7 32 32 H 1.07998 * 119.76189 * 180.28269 * 10 9 8 33 33 H 0.97005 * 120.00168 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.47588 * 59.99494 * 24 23 21 35 35 H 1.09005 * 109.47601 * 179.97438 * 24 23 21 36 36 H 1.09010 * 109.47168 * 300.00051 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1815 5 1 2.4883 1.1469 2.1059 6 7 4.0547 0.2970 1.0000 7 6 3.8036 -0.9966 1.4077 8 7 2.6407 -1.3077 1.9639 9 6 2.4029 -2.5490 2.3532 10 6 3.3637 -3.5388 2.1848 11 7 4.5264 -3.2545 1.6349 12 6 4.7874 -2.0035 1.2348 13 6 6.0275 -1.6908 0.6454 14 1 6.2332 -0.6804 0.3240 15 6 6.9943 -2.6906 0.4751 16 7 6.7452 -3.9137 0.8637 17 14 8.6396 -2.2756 -0.3060 18 1 8.6719 -0.8326 -0.6550 19 1 9.7329 -2.5783 0.6523 20 1 8.8217 -3.0863 -1.5368 21 6 3.6989 2.6841 1.2540 22 8 4.9005 2.7723 1.1634 23 8 2.9554 3.7893 1.4194 24 6 3.6620 5.0562 1.4799 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3584 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 4.9063 0.5207 0.5931 31 1 1.4536 -2.7959 2.8052 32 1 3.1540 -4.5492 2.5033 33 1 7.4143 -4.6061 0.7455 34 1 4.2128 5.2099 0.5519 35 1 2.9451 5.8662 1.6148 36 1 4.3589 5.0440 2.3181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169834247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:27 Heat of formation + Delta-G solvation = -5.356244 kcal Electronic energy + Delta-G solvation = -21611.426888 eV Core-core repulsion = 18290.035938 eV Total energy + Delta-G solvation = -3321.390949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50654 -39.07504 -36.77910 -35.91373 -34.00962 -33.36581 -31.63133 -30.45927 -28.22252 -27.20952 -25.94875 -24.25208 -22.27688 -21.54243 -20.26645 -19.29245 -17.91082 -17.54522 -16.97032 -16.46331 -15.80900 -15.74151 -15.05581 -14.88080 -14.10859 -13.96874 -13.55987 -13.30806 -13.12650 -12.89339 -12.60785 -12.16071 -12.11099 -11.99286 -11.41768 -11.36317 -11.25900 -10.82180 -10.75460 -10.63680 -10.19089 -10.16941 -9.83095 -9.57462 -9.40425 -8.90553 -8.51890 -7.38601 -6.88609 -6.44364 -4.45324 2.27258 2.59312 2.63605 2.91276 3.05585 3.06841 3.11416 3.21492 3.89703 4.19995 4.71497 4.81757 5.05119 5.12078 5.30994 5.39211 5.49084 5.50523 5.74895 5.85346 5.89744 6.00642 6.12594 6.15592 6.36585 6.39272 6.47381 6.70822 6.97273 7.05474 7.21399 7.30235 7.61221 7.78816 7.95947 8.03149 8.33680 8.58876 8.81526 9.37979 9.95798 10.21343 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.006770 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.318146 B = 4134.709786 C = 5523.392265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.107 4.107 3 C -0.098 4.098 4 C 0.183 3.817 5 H 0.118 0.882 6 N -0.708 5.708 7 C 0.256 3.744 8 N -0.487 5.487 9 C -0.089 4.089 10 C 0.036 3.964 11 N -0.448 5.448 12 C 0.198 3.802 13 C -0.418 4.418 14 H 0.085 0.915 15 C 0.068 3.932 16 N -0.711 5.711 17 Si 0.907 3.093 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.272 1.272 21 C 0.457 3.543 22 O -0.499 6.499 23 O -0.358 6.358 24 C 0.035 3.965 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.412 0.588 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.274 0.726 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 10.573 -1.290 12.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.125 4.125 3 C -0.137 4.137 4 C 0.074 3.926 5 H 0.136 0.864 6 N -0.352 5.352 7 C 0.010 3.990 8 N -0.208 5.208 9 C -0.243 4.243 10 C -0.128 4.128 11 N -0.165 5.165 12 C 0.064 3.936 13 C -0.452 4.452 14 H 0.103 0.897 15 C -0.158 4.158 16 N -0.333 5.333 17 Si 0.731 3.269 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.198 1.198 21 C 0.298 3.702 22 O -0.386 6.386 23 O -0.274 6.274 24 C -0.059 4.059 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.138 0.862 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.252 0.748 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.393 10.358 -1.180 11.738 hybrid contribution 1.132 0.300 -0.300 1.209 sum -4.261 10.658 -1.481 11.574 Atomic orbital electron populations 1.23553 0.95773 1.00733 1.05421 1.22895 0.95558 0.98348 0.95728 1.21201 0.97688 0.97079 0.97774 1.20045 0.89711 0.81381 1.01504 0.86404 1.43514 1.17918 1.03870 1.69895 1.19129 0.92698 0.85740 1.01385 1.67354 1.19066 1.20884 1.13508 1.22244 1.00855 0.89557 1.11658 1.23181 0.92007 0.98799 0.98803 1.69532 1.16813 1.17168 1.13023 1.18998 0.92919 0.87232 0.94411 1.19355 0.96720 0.96266 1.32879 0.89704 1.26019 1.00280 0.94595 0.94861 1.70104 1.32909 1.01073 1.29234 0.86269 0.81224 0.80144 0.79308 1.18209 1.19760 1.19767 1.24288 0.86550 0.87125 0.72197 1.90662 1.15921 1.86920 1.45047 1.86517 1.41682 1.15835 1.83364 1.23245 0.97958 0.82233 1.02500 0.89103 0.89553 0.86194 0.90511 0.90828 0.74772 0.85907 0.85841 0.91454 0.91965 0.88232 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.25 14.32 29.02 0.42 -2.84 16 2 C -0.11 -1.82 7.80 -36.02 -0.28 -2.10 16 3 C -0.10 -1.50 5.30 -27.89 -0.15 -1.65 16 4 C 0.18 3.13 2.76 -69.09 -0.19 2.94 16 5 H 0.12 2.12 7.54 -51.93 -0.39 1.73 16 6 N -0.71 -14.51 4.95 -54.54 -0.27 -14.78 16 7 C 0.26 6.02 6.27 -154.82 -0.97 5.05 16 8 N -0.49 -10.99 6.70 -11.67 -0.08 -11.07 16 9 C -0.09 -1.97 11.22 -17.10 -0.19 -2.17 16 10 C 0.04 0.85 11.21 -17.33 -0.19 0.66 16 11 N -0.45 -12.08 8.03 -10.79 -0.09 -12.16 16 12 C 0.20 5.21 6.56 -84.61 -0.56 4.65 16 13 C -0.42 -10.73 8.89 -37.90 -0.34 -11.07 16 14 H 0.08 2.04 6.12 -52.49 -0.32 1.71 16 15 C 0.07 1.69 5.50 -17.31 -0.10 1.60 16 16 N -0.71 -18.52 11.48 55.56 0.64 -17.89 16 17 Si 0.91 18.33 29.56 -169.99 -5.02 13.30 16 18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 C 0.46 7.40 7.32 36.00 0.26 7.66 16 22 O -0.50 -9.29 15.59 -18.75 -0.29 -9.58 16 23 O -0.36 -4.82 10.37 -39.25 -0.41 -5.23 16 24 C 0.03 0.35 10.56 101.05 1.07 1.41 16 25 H 0.09 1.33 8.06 -52.48 -0.42 0.91 16 26 H 0.09 1.11 7.84 -52.49 -0.41 0.70 16 27 H 0.12 2.47 5.61 -52.49 -0.29 2.18 16 28 H 0.08 1.00 7.65 -51.93 -0.40 0.60 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.41 8.63 5.77 -40.82 -0.24 8.39 16 31 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 32 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 34 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.63 8.13 -51.92 -0.42 0.21 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -29.40 311.29 -6.19 -35.59 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.14 Total: 12.97 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.22 Total: 4.15 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.20 Total: -55.90 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.70 Total: -14.81 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.40 -6.19 -35.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169834247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.238 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds