Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99657 * 2 1 4 4 C 1.52991 * 109.47290 * 125.00407 * 3 2 1 5 5 H 1.08999 * 109.47152 * 304.99942 * 4 3 2 6 6 N 1.46506 * 109.47417 * 64.99871 * 4 3 2 7 7 C 1.37937 * 119.99771 * 275.00455 * 6 4 3 8 8 N 1.32616 * 120.23992 * 0.02562 * 7 6 4 9 9 C 1.32248 * 120.08705 * 179.97438 * 8 7 6 10 10 C 1.38961 * 120.57015 * 359.97438 * 9 8 7 11 11 N 1.31724 * 120.47418 * 0.02562 * 10 9 8 12 12 C 1.33907 * 119.89503 * 0.02562 * 11 10 9 13 13 C 1.40821 * 120.27624 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00008 * 179.97438 * 13 12 11 15 15 C 1.40122 * 120.00097 * 0.02562 * 13 12 11 16 16 N 1.30733 * 119.99632 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00108 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47237 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47075 * 120.00023 * 17 15 13 20 20 H 1.48500 * 109.47184 * 239.99528 * 17 15 13 21 21 C 1.50696 * 109.47473 * 184.99928 * 4 3 2 22 22 O 1.20824 * 120.00132 * 239.99811 * 21 4 3 23 23 O 1.34228 * 119.99850 * 59.99946 * 21 4 3 24 24 C 1.45199 * 117.00111 * 180.02562 * 23 21 4 25 25 H 1.08007 * 119.99651 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00269 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00269 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47329 * 5.00206 * 3 2 1 29 29 H 1.09005 * 109.47305 * 245.00227 * 3 2 1 30 30 H 0.96993 * 120.00019 * 95.00041 * 6 4 3 31 31 H 1.08000 * 119.71555 * 180.02562 * 9 8 7 32 32 H 1.07998 * 119.76189 * 180.28269 * 10 9 8 33 33 H 0.97005 * 120.00168 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.47588 * 59.99494 * 24 23 21 35 35 H 1.09005 * 109.47601 * 179.97438 * 24 23 21 36 36 H 1.09010 * 109.47168 * 300.00051 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1815 5 1 2.4883 1.1469 2.1059 6 7 4.0547 0.2970 1.0000 7 6 3.8036 -0.9966 1.4077 8 7 2.6407 -1.3077 1.9639 9 6 2.4029 -2.5490 2.3532 10 6 3.3637 -3.5388 2.1848 11 7 4.5264 -3.2545 1.6349 12 6 4.7874 -2.0035 1.2348 13 6 6.0275 -1.6908 0.6454 14 1 6.2332 -0.6804 0.3240 15 6 6.9943 -2.6906 0.4751 16 7 6.7452 -3.9137 0.8637 17 14 8.6396 -2.2756 -0.3060 18 1 8.6719 -0.8326 -0.6550 19 1 9.7329 -2.5783 0.6523 20 1 8.8217 -3.0863 -1.5368 21 6 3.6989 2.6841 1.2540 22 8 4.9005 2.7723 1.1634 23 8 2.9554 3.7893 1.4194 24 6 3.6620 5.0562 1.4799 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3584 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 4.9063 0.5207 0.5931 31 1 1.4536 -2.7959 2.8052 32 1 3.1540 -4.5492 2.5033 33 1 7.4143 -4.6061 0.7455 34 1 4.2128 5.2099 0.5519 35 1 2.9451 5.8662 1.6148 36 1 4.3589 5.0440 2.3181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169834247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = -22.980649 kcal Electronic energy + Delta-G solvation = -21612.191139 eV Core-core repulsion = 18290.035938 eV Total energy + Delta-G solvation = -3322.155201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79361 -40.82249 -38.09744 -37.26788 -35.84075 -34.84093 -33.45127 -32.01425 -29.67129 -28.31076 -27.78956 -25.55713 -24.04013 -23.26000 -21.61951 -20.59837 -19.56688 -19.16973 -18.33592 -17.74825 -17.31094 -17.29720 -16.60451 -16.35356 -15.80389 -15.43892 -15.02431 -14.64565 -14.46387 -14.40107 -14.00338 -13.75819 -13.45961 -13.17707 -13.06695 -12.98437 -12.54943 -12.35017 -12.12447 -11.91059 -11.82992 -11.66106 -11.45274 -11.30492 -11.15878 -10.51137 -10.02152 -9.23548 -8.65847 -8.27524 -6.33994 0.79934 1.00582 1.22642 1.40631 1.45182 1.52736 1.55196 1.67847 2.21393 2.63490 2.87039 3.65156 3.88230 4.04707 4.10785 4.19487 4.30178 4.32631 4.34834 4.35628 4.45861 4.58912 4.71807 4.79571 4.94380 4.96530 5.12858 5.21075 5.23168 5.24454 5.82011 5.91656 6.06530 6.11007 6.22840 6.53267 6.66354 6.75007 6.97033 7.56045 8.09846 8.41841 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.006770 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.318146 B = 4134.709786 C = 5523.392265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.087 4.087 4 C 0.181 3.819 5 H 0.113 0.887 6 N -0.707 5.707 7 C 0.259 3.741 8 N -0.483 5.483 9 C -0.078 4.078 10 C 0.011 3.989 11 N -0.482 5.482 12 C 0.163 3.837 13 C -0.448 4.448 14 H 0.090 0.910 15 C 0.025 3.975 16 N -0.753 5.753 17 Si 0.982 3.018 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.266 1.266 21 C 0.466 3.534 22 O -0.528 6.528 23 O -0.352 6.352 24 C 0.026 3.974 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.408 0.592 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.280 0.720 34 H 0.064 0.936 35 H 0.139 0.861 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 12.668 -1.547 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.153 4.153 3 C -0.126 4.126 4 C 0.073 3.927 5 H 0.130 0.870 6 N -0.349 5.349 7 C 0.014 3.986 8 N -0.205 5.205 9 C -0.232 4.232 10 C -0.152 4.152 11 N -0.201 5.201 12 C 0.029 3.971 13 C -0.482 4.482 14 H 0.108 0.892 15 C -0.197 4.197 16 N -0.376 5.376 17 Si 0.802 3.198 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.190 1.190 21 C 0.309 3.691 22 O -0.417 6.417 23 O -0.267 6.267 24 C -0.067 4.067 25 H 0.109 0.891 26 H 0.134 0.866 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.247 0.753 31 H 0.174 0.826 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.157 0.843 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.632 12.493 -1.430 14.216 hybrid contribution 1.280 -0.264 -0.164 1.317 sum -5.352 12.229 -1.594 13.444 Atomic orbital electron populations 1.23766 0.94972 1.02164 1.02120 1.22679 0.96289 0.97446 0.98838 1.21116 0.97522 0.97283 0.96634 1.20165 0.89102 0.81235 1.02209 0.86994 1.43534 1.18530 1.03697 1.69174 1.19160 0.92318 0.86536 1.00619 1.67507 1.18396 1.20947 1.13620 1.22779 1.01521 0.89141 1.09766 1.23571 0.91836 1.00306 0.99446 1.69438 1.18482 1.18087 1.14048 1.19396 0.94191 0.88007 0.95532 1.19644 0.97450 0.96983 1.34129 0.89170 1.26888 1.03680 0.94168 0.94941 1.70196 1.34440 1.02152 1.30799 0.85155 0.76328 0.79930 0.78372 1.17789 1.19285 1.19028 1.23950 0.85975 0.87566 0.71599 1.90657 1.17083 1.87377 1.46595 1.86490 1.41420 1.16228 1.82546 1.23632 0.99189 0.81233 1.02609 0.89085 0.86580 0.90290 0.87387 0.90901 0.75294 0.82616 0.83843 0.90960 0.91698 0.84297 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.24 14.32 67.78 0.97 -4.27 16 2 C -0.13 -4.38 7.80 25.65 0.20 -4.18 16 3 C -0.09 -2.49 5.30 29.85 0.16 -2.33 16 4 C 0.18 6.03 2.76 44.24 0.12 6.16 16 5 H 0.11 3.90 7.54 -2.39 -0.02 3.88 16 6 N -0.71 -29.34 4.95 -326.46 -1.62 -30.95 16 7 C 0.26 12.45 6.27 134.03 0.84 13.29 16 8 N -0.48 -21.77 6.70 -190.83 -1.28 -23.05 16 9 C -0.08 -3.41 11.22 84.80 0.95 -2.46 16 10 C 0.01 0.52 11.21 84.88 0.95 1.47 16 11 N -0.48 -26.89 8.03 -188.06 -1.51 -28.40 16 12 C 0.16 8.89 6.56 40.35 0.26 9.15 16 13 C -0.45 -23.78 8.89 23.36 0.21 -23.57 16 14 H 0.09 4.48 6.12 -2.91 -0.02 4.46 16 15 C 0.03 1.28 5.50 85.31 0.47 1.75 16 16 N -0.75 -40.52 11.48 21.86 0.25 -40.27 16 17 Si 0.98 38.32 29.56 68.60 2.03 40.34 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 C 0.47 14.48 7.32 71.23 0.52 15.01 16 22 O -0.53 -19.36 15.59 21.97 0.34 -19.02 16 23 O -0.35 -8.54 10.37 -51.39 -0.53 -9.07 16 24 C 0.03 0.45 10.56 113.37 1.20 1.65 16 25 H 0.09 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.12 2.47 7.84 -2.91 -0.02 2.45 16 27 H 0.08 3.28 5.61 -2.91 -0.02 3.27 16 28 H 0.11 2.42 7.65 -2.39 -0.02 2.40 16 29 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.41 17.50 5.77 -92.71 -0.54 16.97 16 31 H 0.16 5.71 8.06 -2.91 -0.02 5.69 16 32 H 0.14 6.07 8.06 -2.91 -0.02 6.05 16 33 H 0.28 13.60 8.29 -92.70 -0.77 12.83 16 34 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 35 H 0.14 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 Total: -1.00 -65.58 311.29 5.11 -60.47 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.58 Total: 38.30 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.85 Total: 11.65 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -4.16 Total: -122.67 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.19 Total: -28.09 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.34 kcal Total: -65.58 5.11 -60.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169834247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.491 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds