Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 H 1.08998 * 109.47244 * 304.99940 * 4 3 2 6 6 N 1.46502 * 109.47301 * 64.99661 * 4 3 2 7 7 C 1.38799 * 120.00230 * 274.99998 * 6 4 3 8 8 C 1.40085 * 120.75587 * 359.72103 * 7 6 4 9 9 N 1.31661 * 119.13493 * 179.70985 * 8 7 6 10 10 C 1.33598 * 120.79213 * 0.57711 * 9 8 7 11 11 C 1.41150 * 119.17229 * 179.68109 * 10 9 8 12 12 H 1.07997 * 119.99629 * 180.02562 * 11 10 9 13 13 C 1.40039 * 119.99798 * 0.02562 * 11 10 9 14 14 N 1.30724 * 120.00446 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99659 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47401 * 60.00152 * 15 13 11 17 17 H 1.48503 * 109.47248 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47109 * 299.99931 * 15 13 11 19 19 N 1.33600 * 121.65717 * 359.69721 * 10 9 8 20 20 C 1.31660 * 120.78952 * 359.97438 * 19 10 9 21 21 C 1.50694 * 109.47160 * 185.00076 * 4 3 2 22 22 O 1.20827 * 120.00072 * 239.99969 * 21 4 3 23 23 O 1.34235 * 120.00219 * 59.99894 * 21 4 3 24 24 C 1.45196 * 116.99907 * 180.02562 * 23 21 4 25 25 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 26 26 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 27 27 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 28 28 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 29 29 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 30 30 H 0.96996 * 119.99711 * 95.00101 * 6 4 3 31 31 H 1.08005 * 120.43417 * 359.97438 * 8 7 6 32 32 H 0.96996 * 120.00103 * 180.02562 * 14 13 11 33 33 H 1.08007 * 120.42762 * 180.02562 * 20 19 10 34 34 H 1.09002 * 109.46998 * 299.99501 * 24 23 21 35 35 H 1.09001 * 109.47650 * 60.00036 * 24 23 21 36 36 H 1.09003 * 109.47262 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 1 2.4795 1.1521 2.1081 6 7 4.0505 0.2993 1.0110 7 6 3.7961 -1.0013 1.4234 8 6 2.5714 -1.3391 2.0137 9 7 2.3618 -2.5839 2.3877 10 6 3.3041 -3.5162 2.2206 11 6 3.0455 -4.8388 2.6402 12 1 3.7979 -5.6028 2.5119 13 6 1.8133 -5.1602 3.2230 14 7 0.9024 -4.2355 3.3779 15 14 1.4714 -6.9105 3.7790 16 1 2.4682 -7.3074 4.8057 17 1 0.1065 -6.9879 4.3591 18 1 1.5678 -7.8274 2.6149 19 7 4.4851 -3.2280 1.6665 20 6 4.7600 -2.0050 1.2636 21 6 3.6937 2.6870 1.2576 22 8 4.8957 2.7750 1.1718 23 8 2.9495 3.7928 1.4171 24 6 3.6561 5.0598 1.4774 25 1 -0.5400 0.9353 -0.0045 26 1 -0.5400 -0.9353 0.0045 27 1 1.8500 -0.9353 0.0046 28 1 2.6252 1.4004 -0.9293 29 1 1.3582 2.1318 0.0846 30 1 4.9038 0.5220 0.6072 31 1 1.8074 -0.5891 2.1562 32 1 0.0491 -4.4580 3.7819 33 1 5.7165 -1.7786 0.8160 34 1 4.3492 5.0495 2.3186 35 1 4.2107 5.2111 0.5514 36 1 2.9387 5.8700 1.6082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169837448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -23.325759 kcal Electronic energy + Delta-G solvation = -21258.983624 eV Core-core repulsion = 17936.813458 eV Total energy + Delta-G solvation = -3322.170166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83089 -40.88232 -38.31465 -37.38717 -35.60051 -34.64304 -33.63995 -32.07528 -29.99532 -28.43678 -27.13255 -25.39596 -24.89741 -23.21801 -21.62740 -20.63026 -19.75084 -19.14218 -18.30493 -17.72399 -17.30725 -17.09789 -16.77105 -16.29224 -16.04092 -15.61275 -15.02190 -14.60568 -14.50661 -14.36638 -14.03468 -13.77994 -13.46824 -13.07861 -12.98913 -12.86888 -12.55323 -12.51363 -12.14680 -11.94208 -11.83088 -11.71421 -11.41023 -11.29780 -11.03420 -10.81482 -10.18238 -9.19939 -8.55365 -8.30289 -6.34082 0.86552 0.95561 1.04491 1.37431 1.44357 1.56193 1.56754 1.59418 2.28003 2.69713 2.86152 3.60500 3.85940 3.93703 4.03826 4.07722 4.17290 4.18925 4.31634 4.33202 4.34777 4.42918 4.64988 4.72421 4.73939 4.93502 5.13145 5.19473 5.23185 5.32886 5.52346 5.79018 5.96067 6.24278 6.36405 6.58025 6.59579 6.79830 6.93263 7.31877 8.30991 8.51223 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.004399 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.915625 B = 6363.022030 C = 6833.184728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.163 4.163 3 C -0.087 4.087 4 C 0.175 3.825 5 H 0.109 0.891 6 N -0.724 5.724 7 C -0.011 4.011 8 C 0.098 3.902 9 N -0.503 5.503 10 C 0.341 3.659 11 C -0.456 4.456 12 H 0.080 0.920 13 C 0.029 3.971 14 N -0.758 5.758 15 Si 0.991 3.009 16 H -0.262 1.262 17 H -0.263 1.263 18 H -0.262 1.262 19 N -0.592 5.592 20 C 0.090 3.910 21 C 0.470 3.530 22 O -0.526 6.526 23 O -0.353 6.353 24 C 0.027 3.973 25 H 0.125 0.875 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.402 0.598 31 H 0.150 0.850 32 H 0.280 0.720 33 H 0.158 0.842 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 15.718 -4.179 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.181 4.181 3 C -0.125 4.125 4 C 0.067 3.933 5 H 0.127 0.873 6 N -0.363 5.363 7 C -0.117 4.117 8 C -0.078 4.078 9 N -0.220 5.220 10 C 0.098 3.902 11 C -0.493 4.493 12 H 0.099 0.901 13 C -0.193 4.193 14 N -0.382 5.382 15 Si 0.811 3.189 16 H -0.187 1.187 17 H -0.188 1.188 18 H -0.186 1.186 19 N -0.312 5.312 20 C -0.083 4.083 21 C 0.313 3.687 22 O -0.415 6.415 23 O -0.268 6.268 24 C -0.066 4.066 25 H 0.143 0.857 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.239 0.761 31 H 0.167 0.833 32 H 0.090 0.910 33 H 0.175 0.825 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.425 14.943 -3.755 15.597 hybrid contribution 0.779 0.262 -0.172 0.840 sum -1.646 15.205 -3.926 15.790 Atomic orbital electron populations 1.23940 0.95413 1.02417 1.00129 1.22906 0.96392 0.98036 1.00785 1.21157 0.97638 0.96518 0.97229 1.20216 0.89452 0.81914 1.01753 0.87325 1.43310 1.18135 1.03573 1.71286 1.19019 0.97978 0.86833 1.07855 1.23159 0.94124 0.94829 0.95713 1.69239 1.32193 1.00043 1.20564 1.20112 0.83999 0.94657 0.91386 1.19341 1.01041 0.92814 1.36131 0.90142 1.26832 0.94680 1.03613 0.94133 1.70191 1.04469 1.35367 1.28129 0.85136 0.78344 0.76210 0.79165 1.18663 1.18754 1.18594 1.68564 1.22914 1.20838 1.18853 1.22715 0.98503 0.88093 0.99006 1.23776 0.85921 0.87380 0.71602 1.90645 1.16908 1.87390 1.46587 1.86497 1.41481 1.16276 1.82537 1.23622 0.99138 0.81190 1.02640 0.85707 0.89886 0.89962 0.89963 0.87180 0.76144 0.83293 0.90965 0.82513 0.92201 0.91555 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.85 14.32 67.78 0.97 -3.88 16 2 C -0.16 -4.82 6.76 25.64 0.17 -4.65 16 3 C -0.09 -2.02 5.30 29.85 0.16 -1.86 16 4 C 0.17 4.69 2.72 44.24 0.12 4.81 16 5 H 0.11 3.01 6.52 -2.39 -0.02 3.00 16 6 N -0.72 -23.51 5.05 -321.26 -1.62 -25.14 16 7 C -0.01 -0.48 5.74 38.93 0.22 -0.25 16 8 C 0.10 4.49 7.86 85.17 0.67 5.16 16 9 N -0.50 -27.95 7.84 -193.41 -1.52 -29.46 16 10 C 0.34 19.92 7.35 134.95 0.99 20.91 16 11 C -0.46 -26.34 9.35 23.42 0.22 -26.13 16 12 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 13 C 0.03 1.53 5.50 85.29 0.47 2.00 16 14 N -0.76 -40.91 11.41 21.84 0.25 -40.66 16 15 Si 0.99 39.36 29.56 68.60 2.03 41.39 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 N -0.59 -32.23 10.34 -193.42 -2.00 -34.23 16 20 C 0.09 4.08 11.20 85.16 0.95 5.04 16 21 C 0.47 11.86 7.32 71.23 0.52 12.39 16 22 O -0.53 -15.82 15.59 21.96 0.34 -15.48 16 23 O -0.35 -7.08 10.37 -51.46 -0.53 -7.62 16 24 C 0.03 0.37 10.56 113.37 1.20 1.57 16 25 H 0.12 2.47 7.84 -2.91 -0.02 2.45 16 26 H 0.08 2.48 8.06 -2.91 -0.02 2.45 16 27 H 0.08 3.18 5.34 -2.91 -0.02 3.16 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 1.96 7.65 -2.39 -0.02 1.94 16 30 H 0.40 12.44 7.82 -92.71 -0.72 11.72 16 31 H 0.15 6.09 5.03 -2.91 -0.01 6.08 16 32 H 0.28 13.58 8.29 -92.71 -0.77 12.81 16 33 H 0.16 5.99 8.06 -2.91 -0.02 5.96 16 34 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 35 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 36 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -69.41 310.46 4.01 -65.40 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.39 Total: 30.70 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 6.67 Total: 15.10 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -4.89 Total: -129.49 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.19 Total: -23.10 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -69.41 4.01 -65.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169837448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.078 kcal (2) G-P(sol) polarization free energy of solvation -69.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds