Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00202 * 2 1 4 4 C 1.50704 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.31812 * 119.13189 * 90.00615 * 4 3 2 6 6 C 1.32219 * 120.58007 * 180.27392 * 5 4 3 7 7 C 1.38935 * 119.23114 * 359.94927 * 6 5 4 8 8 C 1.37781 * 118.63866 * 359.51336 * 7 6 5 9 9 N 1.31579 * 119.12997 * 269.97622 * 4 3 2 10 10 C 1.50395 * 122.88440 * 181.48785 * 8 7 6 11 11 C 1.52855 * 110.74328 * 339.59592 * 10 8 7 12 12 N 1.47212 * 108.08583 * 47.29969 * 11 10 8 13 13 C 1.34782 * 121.28463 * 115.97828 * 12 11 10 14 14 O 1.21687 * 119.99870 * 354.80056 * 13 12 11 15 15 C 1.46371 * 120.00171 * 174.80024 * 13 12 11 16 16 H 1.08000 * 119.99455 * 5.00255 * 15 13 12 17 17 C 1.40046 * 120.00033 * 184.99805 * 15 13 12 18 18 N 1.30671 * 120.00053 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99809 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46885 * 90.00125 * 19 17 15 21 21 H 1.48498 * 109.46810 * 209.99758 * 19 17 15 22 22 H 1.48501 * 109.47191 * 330.00207 * 19 17 15 23 23 C 1.46792 * 117.43163 * 296.00292 * 12 11 10 24 24 H 1.08999 * 109.47488 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47167 * 300.00406 * 1 2 3 26 26 H 1.09009 * 109.46871 * 59.99736 * 1 2 3 27 27 H 1.08994 * 109.47122 * 60.00129 * 3 2 1 28 28 H 1.08998 * 109.47077 * 300.00284 * 3 2 1 29 29 H 1.08002 * 120.38367 * 179.67173 * 6 5 4 30 30 H 1.09004 * 109.23136 * 99.92236 * 10 8 7 31 31 H 1.09003 * 109.22223 * 219.27129 * 10 8 7 32 32 H 1.09000 * 109.73488 * 287.65538 * 11 10 8 33 33 H 1.08999 * 109.78390 * 166.97386 * 11 10 8 34 34 H 0.96999 * 120.00078 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.46406 * 284.38210 * 23 12 11 36 36 H 1.08991 * 109.46828 * 164.39218 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.1518 1.1360 -1.1523 6 6 5.4690 1.0261 -1.1863 7 6 6.1757 0.9651 0.0083 8 6 5.4763 1.0318 1.1935 9 7 4.1516 1.1360 1.1485 10 6 6.1466 1.0074 2.5397 11 6 7.5498 0.4102 2.4351 12 7 8.2327 1.0449 1.2958 13 6 9.3297 1.8075 1.4738 14 8 9.7189 2.0604 2.5987 15 6 10.0529 2.3315 0.3141 16 1 9.6631 2.1754 -0.6809 17 6 11.2502 3.0351 0.4949 18 7 11.7214 3.2244 1.6989 19 14 12.1727 3.7045 -0.9852 20 1 11.6988 5.0799 -1.2833 21 1 13.6275 3.7355 -0.6890 22 1 11.9251 2.8301 -2.1597 23 6 7.6726 0.8155 -0.0416 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8464 0.8899 28 1 1.6886 1.8464 -0.8899 29 1 5.9890 0.9798 -2.1317 30 1 6.2174 2.0250 2.9240 31 1 5.5509 0.4059 3.2263 32 1 7.4808 -0.6650 2.2704 33 1 8.1039 0.6073 3.3527 34 1 12.5508 3.7115 1.8240 35 1 7.9262 -0.1912 -0.3738 36 1 8.0874 1.5434 -0.7388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171278626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = -26.495233 kcal Electronic energy + Delta-G solvation = -21062.952350 eV Core-core repulsion = 17740.644745 eV Total energy + Delta-G solvation = -3322.307605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18536 -38.31188 -37.70985 -35.39402 -33.96022 -32.68947 -31.90354 -30.83497 -28.62143 -26.58487 -26.17581 -24.59966 -24.02369 -22.80290 -21.04115 -19.04890 -17.88459 -16.78418 -16.65573 -16.23888 -15.74249 -15.56075 -15.36541 -14.89457 -14.37481 -14.15276 -14.08406 -13.55630 -13.10754 -12.87638 -12.55043 -12.51337 -12.09153 -11.89021 -11.65849 -11.58352 -11.24176 -11.09412 -10.98554 -10.59598 -10.38048 -10.30529 -10.18872 -9.93289 -9.08468 -8.96268 -8.94013 -7.73609 -7.45817 -6.30186 -4.76445 0.95261 1.20775 3.08269 3.15596 3.18182 3.29051 3.87264 3.95955 4.12041 4.33205 4.37337 4.46561 4.65287 4.92912 5.02471 5.08517 5.13231 5.18542 5.28069 5.41455 5.43613 5.52094 5.54960 5.75901 5.91775 6.02328 6.03301 6.21988 6.35804 6.40753 6.58942 6.86532 7.12955 7.33978 7.36841 7.96575 8.19509 8.20615 8.91442 9.26915 10.44791 10.63537 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032107 B = 0.004080 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.882209 B = 6861.918365 C = 7472.982519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.301 3.699 5 N -0.509 5.509 6 C 0.149 3.851 7 C -0.179 4.179 8 C 0.191 3.809 9 N -0.507 5.507 10 C -0.086 4.086 11 C 0.120 3.880 12 N -0.644 5.644 13 C 0.562 3.438 14 O -0.572 6.572 15 C -0.544 4.544 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.765 5.765 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.263 1.263 23 C 0.169 3.831 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.270 0.730 35 H 0.068 0.932 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.531 -4.438 -5.179 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.060 3.940 4 C 0.032 3.968 5 N -0.224 5.224 6 C -0.019 4.019 7 C -0.184 4.184 8 C 0.047 3.953 9 N -0.223 5.223 10 C -0.125 4.125 11 C -0.005 4.005 12 N -0.383 5.383 13 C 0.368 3.632 14 O -0.454 6.454 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.394 5.394 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.188 1.188 23 C 0.043 3.957 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.190 0.810 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.030 -4.290 -4.398 17.167 hybrid contribution 1.001 0.476 -0.885 1.418 sum -15.029 -3.815 -5.282 16.381 Atomic orbital electron populations 1.22762 0.80394 1.02965 1.00165 1.87931 1.20000 1.26694 1.95492 1.20887 0.85451 0.85668 1.01991 1.22399 0.96271 0.94115 0.84013 1.68147 1.10047 1.13929 1.30241 1.23174 0.89185 0.91266 0.98260 1.21882 1.00433 1.01399 0.94728 1.21297 0.88296 0.89653 0.96094 1.68144 1.09892 1.13809 1.30410 1.20850 0.96718 1.03785 0.91188 1.21199 0.90306 0.95359 0.93651 1.48306 1.31098 1.54890 1.03957 1.18243 0.77495 0.76953 0.90461 1.90607 1.67410 1.61355 1.26026 1.20941 1.07453 1.37159 0.92508 0.90932 1.25726 0.96971 0.94219 0.96328 1.69999 1.17556 1.30003 1.21812 0.86370 0.78788 0.79739 0.81920 1.19686 1.20368 1.18752 1.20135 0.85270 1.01750 0.88542 0.89432 0.93789 0.93820 0.90732 0.90719 0.81015 0.88955 0.89262 0.92921 0.88369 0.91913 0.91452 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.00 10.69 -35.23 -0.38 -5.37 16 3 C 0.14 1.73 6.37 36.01 0.23 1.96 16 4 C 0.30 4.80 7.27 -157.36 -1.14 3.66 16 5 N -0.51 -8.06 10.35 -10.71 -0.11 -8.17 16 6 C 0.15 2.19 10.94 -17.13 -0.19 2.00 16 7 C -0.18 -2.97 5.82 -104.62 -0.61 -3.58 16 8 C 0.19 3.31 6.65 -82.42 -0.55 2.76 16 9 N -0.51 -8.69 10.21 -7.19 -0.07 -8.77 16 10 C -0.09 -1.44 6.13 -28.11 -0.17 -1.61 16 11 C 0.12 2.22 6.42 -3.73 -0.02 2.19 16 12 N -0.64 -13.92 2.94 -176.11 -0.52 -14.44 16 13 C 0.56 15.25 7.64 -12.99 -0.10 15.15 16 14 O -0.57 -17.75 14.53 5.20 0.08 -17.67 16 15 C -0.54 -14.50 8.83 -35.63 -0.31 -14.81 16 16 H 0.07 1.73 5.88 -52.49 -0.31 1.42 16 17 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 18 N -0.77 -22.15 11.84 55.55 0.66 -21.49 16 19 Si 0.91 19.27 29.56 -169.99 -5.02 14.25 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 C 0.17 2.96 6.07 -5.12 -0.03 2.93 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.98 7.09 -51.93 -0.37 1.62 16 34 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.11 1.92 5.70 -51.93 -0.30 1.62 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -34.66 308.38 -6.94 -41.60 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.33 Total: 1.13 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: -1.88 Total: 14.30 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.04 Total: -52.88 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.30 Total: -23.05 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.66 -6.94 -41.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171278626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.103 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds