Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00202 * 2 1 4 4 C 1.50704 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.31812 * 119.13189 * 90.00615 * 4 3 2 6 6 C 1.32219 * 120.58007 * 180.27392 * 5 4 3 7 7 C 1.38935 * 119.23114 * 359.94927 * 6 5 4 8 8 C 1.37781 * 118.63866 * 359.51336 * 7 6 5 9 9 N 1.31579 * 119.12997 * 269.97622 * 4 3 2 10 10 C 1.50395 * 122.88440 * 181.48785 * 8 7 6 11 11 C 1.52855 * 110.74328 * 339.59592 * 10 8 7 12 12 N 1.47212 * 108.08583 * 47.29969 * 11 10 8 13 13 C 1.34782 * 121.28463 * 115.97828 * 12 11 10 14 14 O 1.21687 * 119.99870 * 354.80056 * 13 12 11 15 15 C 1.46371 * 120.00171 * 174.80024 * 13 12 11 16 16 H 1.08000 * 119.99455 * 5.00255 * 15 13 12 17 17 C 1.40046 * 120.00033 * 184.99805 * 15 13 12 18 18 N 1.30671 * 120.00053 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99809 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46885 * 90.00125 * 19 17 15 21 21 H 1.48498 * 109.46810 * 209.99758 * 19 17 15 22 22 H 1.48501 * 109.47191 * 330.00207 * 19 17 15 23 23 C 1.46792 * 117.43163 * 296.00292 * 12 11 10 24 24 H 1.08999 * 109.47488 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47167 * 300.00406 * 1 2 3 26 26 H 1.09009 * 109.46871 * 59.99736 * 1 2 3 27 27 H 1.08994 * 109.47122 * 60.00129 * 3 2 1 28 28 H 1.08998 * 109.47077 * 300.00284 * 3 2 1 29 29 H 1.08002 * 120.38367 * 179.67173 * 6 5 4 30 30 H 1.09004 * 109.23136 * 99.92236 * 10 8 7 31 31 H 1.09003 * 109.22223 * 219.27129 * 10 8 7 32 32 H 1.09000 * 109.73488 * 287.65538 * 11 10 8 33 33 H 1.08999 * 109.78390 * 166.97386 * 11 10 8 34 34 H 0.96999 * 120.00078 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.46406 * 284.38210 * 23 12 11 36 36 H 1.08991 * 109.46828 * 164.39218 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.1518 1.1360 -1.1523 6 6 5.4690 1.0261 -1.1863 7 6 6.1757 0.9651 0.0083 8 6 5.4763 1.0318 1.1935 9 7 4.1516 1.1360 1.1485 10 6 6.1466 1.0074 2.5397 11 6 7.5498 0.4102 2.4351 12 7 8.2327 1.0449 1.2958 13 6 9.3297 1.8075 1.4738 14 8 9.7189 2.0604 2.5987 15 6 10.0529 2.3315 0.3141 16 1 9.6631 2.1754 -0.6809 17 6 11.2502 3.0351 0.4949 18 7 11.7214 3.2244 1.6989 19 14 12.1727 3.7045 -0.9852 20 1 11.6988 5.0799 -1.2833 21 1 13.6275 3.7355 -0.6890 22 1 11.9251 2.8301 -2.1597 23 6 7.6726 0.8155 -0.0416 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8464 0.8899 28 1 1.6886 1.8464 -0.8899 29 1 5.9890 0.9798 -2.1317 30 1 6.2174 2.0250 2.9240 31 1 5.5509 0.4059 3.2263 32 1 7.4808 -0.6650 2.2704 33 1 8.1039 0.6073 3.3527 34 1 12.5508 3.7115 1.8240 35 1 7.9262 -0.1912 -0.3738 36 1 8.0874 1.5434 -0.7388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171278626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = -51.789550 kcal Electronic energy + Delta-G solvation = -21064.049194 eV Core-core repulsion = 17740.644745 eV Total energy + Delta-G solvation = -3323.404448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43277 -39.88811 -38.78662 -37.10541 -35.26350 -34.67303 -33.35449 -32.26714 -29.75250 -28.41832 -27.11666 -25.88680 -25.42462 -24.13029 -22.55435 -20.70386 -19.30816 -18.11127 -17.89485 -17.63141 -17.28813 -16.82512 -16.48576 -16.29680 -15.79004 -15.68593 -15.39292 -14.89555 -14.62515 -14.43136 -13.74857 -13.65866 -13.44650 -13.33083 -13.20252 -12.95662 -12.74283 -12.58433 -12.36895 -12.20572 -11.98938 -11.91465 -11.51968 -10.92441 -10.74738 -10.33957 -10.26048 -9.81540 -9.22623 -8.29266 -6.84444 -0.27358 -0.02680 1.43330 1.43645 1.59192 2.23374 2.27706 2.45234 2.62792 2.73063 3.02669 3.36614 3.43132 3.55588 3.68919 3.86274 4.05199 4.13653 4.24067 4.30653 4.40923 4.54393 4.57390 4.59862 4.65171 4.71500 4.81531 4.86699 4.88737 5.00865 5.31928 5.38719 5.67414 5.88195 6.07653 6.08839 6.32515 6.88241 6.97547 7.36474 8.44103 8.66495 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032107 B = 0.004080 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.882209 B = 6861.918365 C = 7472.982519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.139 3.861 4 C 0.292 3.708 5 N -0.516 5.516 6 C 0.160 3.840 7 C -0.191 4.191 8 C 0.173 3.827 9 N -0.522 5.522 10 C -0.076 4.076 11 C 0.120 3.880 12 N -0.648 5.648 13 C 0.546 3.454 14 O -0.627 6.627 15 C -0.566 4.566 16 H 0.099 0.901 17 C 0.030 3.970 18 N -0.822 5.822 19 Si 0.994 3.006 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.242 1.242 23 C 0.171 3.829 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.210 0.790 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.274 0.726 35 H 0.092 0.908 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.860 -4.810 -7.941 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.061 3.939 4 C 0.024 3.976 5 N -0.231 5.231 6 C -0.007 4.007 7 C -0.196 4.196 8 C 0.030 3.970 9 N -0.237 5.237 10 C -0.114 4.114 11 C -0.004 4.004 12 N -0.384 5.384 13 C 0.353 3.647 14 O -0.513 6.513 15 C -0.602 4.602 16 H 0.117 0.883 17 C -0.186 4.186 18 N -0.452 5.452 19 Si 0.813 3.187 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.164 1.164 23 C 0.047 3.953 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.227 0.773 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.430 -4.702 -7.183 19.430 hybrid contribution 1.268 0.524 -0.011 1.372 sum -16.162 -4.178 -7.194 18.178 Atomic orbital electron populations 1.23000 0.78085 1.04214 1.01525 1.87878 1.22527 1.26888 1.95756 1.20993 0.83482 0.85993 1.03413 1.23131 0.97905 0.92854 0.83740 1.68290 1.10408 1.14304 1.30075 1.23738 0.88944 0.89085 0.98979 1.21807 0.99671 1.02764 0.95338 1.21358 0.88855 0.90454 0.96334 1.68177 1.09670 1.14675 1.31225 1.20681 0.95776 1.02977 0.92007 1.21288 0.90693 0.96678 0.91759 1.48105 1.30104 1.53735 1.06502 1.18621 0.78727 0.77359 0.90023 1.90559 1.69464 1.63503 1.27816 1.21505 1.07912 1.37229 0.93559 0.88302 1.26976 0.97880 0.93971 0.99746 1.70181 1.18452 1.31458 1.25069 0.85070 0.76771 0.79162 0.77687 1.19035 1.20180 1.16444 1.20255 0.85815 1.03045 0.86188 0.88320 0.92600 0.92257 0.89671 0.88902 0.77330 0.90761 0.87009 0.90351 0.90908 0.91617 0.89027 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -9.90 10.69 -148.98 -1.59 -11.50 16 3 C 0.14 3.20 6.37 71.24 0.45 3.65 16 4 C 0.29 8.80 7.27 138.81 1.01 9.81 16 5 N -0.52 -15.07 10.35 -187.78 -1.94 -17.02 16 6 C 0.16 4.27 10.94 84.80 0.93 5.20 16 7 C -0.19 -5.98 5.82 -19.86 -0.12 -6.09 16 8 C 0.17 5.85 6.65 42.18 0.28 6.13 16 9 N -0.52 -17.26 10.21 -176.65 -1.80 -19.07 16 10 C -0.08 -2.53 6.13 29.70 0.18 -2.35 16 11 C 0.12 4.51 6.42 86.20 0.55 5.06 16 12 N -0.65 -28.17 2.94 -829.30 -2.44 -30.60 16 13 C 0.55 30.43 7.64 86.36 0.66 31.09 16 14 O -0.63 -40.84 14.53 -4.31 -0.06 -40.90 16 15 C -0.57 -30.20 8.83 24.83 0.22 -29.98 16 16 H 0.10 4.56 5.88 -2.91 -0.02 4.54 16 17 C 0.03 1.58 5.50 85.30 0.47 2.05 16 18 N -0.82 -49.08 11.84 21.83 0.26 -48.82 16 19 Si 0.99 39.05 29.56 68.60 2.03 41.08 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 23 C 0.17 5.73 6.07 85.52 0.52 6.25 16 24 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.21 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.07 2.73 8.14 -2.38 -0.02 2.72 16 31 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.07 3.10 7.09 -2.39 -0.02 3.09 16 34 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 35 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.11 3.59 5.70 -2.39 -0.01 3.57 16 Total: -1.00 -77.65 308.38 1.96 -75.69 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.11 Total: 18.67 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 6.41 Total: 32.46 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -5.93 Total: -115.50 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -1.65 Total: -52.39 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -77.65 1.96 -75.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171278626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.898 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds