Wall clock time and date at job start Mon Mar 30 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36948 * 119.99980 * 2 1 4 4 H 1.08003 * 119.99866 * 202.22943 * 3 2 1 5 5 C 1.38991 * 119.99862 * 22.22573 * 3 2 1 6 6 N 1.31394 * 120.00199 * 19.39880 * 5 3 2 7 7 Si 1.86804 * 119.99944 * 199.39406 * 5 3 2 8 8 H 1.48496 * 109.46965 * 94.99131 * 7 5 3 9 9 H 1.48503 * 109.47108 * 214.99047 * 7 5 3 10 10 H 1.48502 * 109.46982 * 334.99013 * 7 5 3 11 11 C 1.34777 * 120.00131 * 180.02562 * 2 1 3 12 12 O 1.21631 * 120.00119 * 185.59190 * 11 2 1 13 13 C 1.47388 * 120.00069 * 5.58590 * 11 2 1 14 14 C 1.41276 * 120.69717 * 101.00818 * 13 11 2 15 15 N 1.31441 * 119.51145 * 180.25516 * 14 13 11 16 16 C 1.33650 * 121.03418 * 359.75511 * 15 14 13 17 17 O 1.21871 * 119.25566 * 179.97438 * 16 15 14 18 18 N 1.34499 * 121.49320 * 0.02562 * 16 15 14 19 19 C 1.46502 * 119.79722 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47337 * 269.98383 * 19 18 16 21 21 C 1.53006 * 117.49423 * 243.62113 * 20 19 18 22 22 C 1.53003 * 117.49692 * 175.00195 * 20 19 18 23 23 C 1.34794 * 120.40662 * 359.97438 * 18 16 15 24 24 H 1.09000 * 109.46724 * 271.43277 * 1 2 3 25 25 H 1.08993 * 109.47548 * 31.43550 * 1 2 3 26 26 H 1.08998 * 109.47077 * 151.43695 * 1 2 3 27 27 H 0.97004 * 120.00168 * 180.02562 * 6 5 3 28 28 H 1.07999 * 120.24453 * 0.02562 * 14 13 11 29 29 H 1.09006 * 109.47035 * 29.98021 * 19 18 16 30 30 H 1.08999 * 109.47167 * 149.97649 * 19 18 16 31 31 H 1.08993 * 115.54954 * 29.32382 * 20 19 18 32 32 H 1.08994 * 117.49806 * 359.97438 * 21 20 19 33 33 H 1.09004 * 117.49605 * 145.01759 * 21 20 19 34 34 H 1.09000 * 117.49166 * 214.97717 * 22 20 19 35 35 H 1.08999 * 117.50169 * 359.97122 * 22 20 19 36 36 H 1.07998 * 120.52689 * 179.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1695 1.2207 -0.3539 5 6 1.5321 2.3450 0.4553 6 7 0.4691 2.2647 1.2234 7 14 2.2136 4.0167 -0.0246 8 1 1.4889 4.5227 -1.2179 9 1 2.0345 4.9665 1.1029 10 1 3.6591 3.8900 -0.3402 11 6 2.1388 -1.1672 -0.0005 12 8 3.3508 -1.1697 0.1021 13 6 1.4072 -2.4405 -0.1253 14 6 1.3501 -3.1213 -1.3619 15 7 0.6868 -4.2528 -1.4481 16 6 0.0692 -4.7723 -0.3828 17 8 -0.5370 -5.8231 -0.4994 18 7 0.1006 -4.1612 0.8149 19 6 -0.5890 -4.7641 1.9582 20 6 -2.0276 -4.2465 2.0169 21 6 -2.4316 -3.4199 3.2395 22 6 -2.9526 -4.8492 3.0763 23 6 0.7637 -2.9979 0.9701 24 1 -0.3633 0.0257 1.0274 25 1 -0.3634 0.8768 -0.5359 26 1 -0.3633 -0.9026 -0.4913 27 1 0.0379 3.0736 1.5408 28 1 1.8447 -2.7132 -2.2309 29 1 -0.5974 -5.8485 1.8469 30 1 -0.0690 -4.4973 2.8782 31 1 -2.4695 -3.9763 1.0579 32 1 -1.6726 -3.2452 4.0020 33 1 -3.1394 -2.6054 3.0848 34 1 -4.0031 -4.9751 2.8142 35 1 -2.5363 -5.6148 3.7311 36 1 0.7899 -2.5053 1.9309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197767377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:07 Heat of formation + Delta-G solvation = -1.134863 kcal Electronic energy + Delta-G solvation = -21500.713824 eV Core-core repulsion = 18179.505927 eV Total energy + Delta-G solvation = -3321.207896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.98240 -40.34723 -38.64931 -38.11273 -36.64715 -36.25700 -33.76565 -32.18432 -29.17969 -28.19933 -26.73987 -25.91748 -24.87271 -23.24960 -22.22282 -21.27594 -19.62378 -18.99007 -18.64676 -18.21416 -17.63182 -17.25906 -16.68789 -16.02091 -15.84262 -15.53486 -15.38498 -15.23422 -14.81110 -14.28636 -13.99939 -13.57413 -13.45412 -13.26367 -13.21171 -12.93722 -12.62428 -12.38412 -12.32445 -12.28981 -12.09534 -12.03180 -11.43186 -11.04894 -11.02202 -10.90779 -10.45453 -9.70855 -9.56463 -8.37118 -5.96160 -0.53196 0.31284 1.16019 1.41485 1.48671 1.59239 1.93750 2.28879 2.53024 2.79203 2.95888 3.04176 3.16202 3.37281 3.45959 3.66611 3.82343 3.91073 3.98216 4.10057 4.27934 4.45725 4.52053 4.57215 4.74095 4.79639 4.97045 4.97460 5.01755 5.17037 5.18709 5.25155 5.31001 5.49693 6.08387 6.45079 6.53947 6.89834 7.14883 7.41432 7.97808 8.66185 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.005280 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.892609 B = 5302.208822 C = 6268.816962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.437 5.437 3 C -0.345 4.345 4 H 0.079 0.921 5 C 0.008 3.992 6 N -0.883 5.883 7 Si 0.983 3.017 8 H -0.268 1.268 9 H -0.277 1.277 10 H -0.273 1.273 11 C 0.498 3.502 12 O -0.621 6.621 13 C -0.275 4.275 14 C 0.286 3.714 15 N -0.576 5.576 16 C 0.620 3.380 17 O -0.573 6.573 18 N -0.491 5.491 19 C 0.119 3.881 20 C -0.192 4.192 21 C -0.167 4.167 22 C -0.155 4.155 23 C 0.238 3.762 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.275 0.725 28 H 0.193 0.807 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 -6.875 5.442 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.154 5.154 3 C -0.473 4.473 4 H 0.096 0.904 5 C -0.196 4.196 6 N -0.520 5.520 7 Si 0.807 3.193 8 H -0.193 1.193 9 H -0.202 1.202 10 H -0.198 1.198 11 C 0.286 3.714 12 O -0.508 6.508 13 C -0.286 4.286 14 C 0.106 3.894 15 N -0.310 5.310 16 C 0.323 3.677 17 O -0.451 6.451 18 N -0.201 5.201 19 C -0.002 4.002 20 C -0.211 4.211 21 C -0.203 4.203 22 C -0.192 4.192 23 C 0.097 3.903 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.210 0.790 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.401 -8.140 4.896 12.042 hybrid contribution 0.344 1.413 0.289 1.482 sum -7.058 -6.727 5.184 11.043 Atomic orbital electron populations 1.21393 0.79514 0.99697 1.01500 1.43732 1.06511 1.04361 1.60762 1.19617 0.99722 0.84898 1.43087 0.90356 1.25985 0.96848 1.02649 0.94110 1.70041 1.21739 1.30864 1.29380 0.85065 0.78706 0.77315 0.78211 1.19315 1.20239 1.19791 1.17622 0.86578 0.82920 0.84286 1.90634 1.15682 1.87249 1.57248 1.20400 1.10871 1.01251 0.96078 1.23960 0.83538 0.85546 0.96382 1.69834 1.17773 1.15666 1.27728 1.18331 0.82855 0.86018 0.80507 1.90906 1.47084 1.23430 1.83706 1.46249 1.40987 1.19324 1.13515 1.21977 0.91374 1.00035 0.86813 1.22409 0.94983 1.08156 0.95567 1.23233 1.04084 0.94805 0.98221 1.23056 0.99215 0.97010 0.99944 1.23159 0.83232 0.83171 1.00767 0.92450 0.92952 0.92780 0.91479 0.79020 0.87922 0.84993 0.89766 0.86693 0.88528 0.88131 0.86692 0.77819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.80 8.44 127.77 1.08 5.88 16 2 N -0.44 -20.14 3.01 -662.70 -1.99 -22.13 16 3 C -0.35 -17.84 9.21 84.07 0.77 -17.07 16 4 H 0.08 4.35 7.50 -2.91 -0.02 4.33 16 5 C 0.01 0.39 4.93 84.94 0.42 0.81 16 6 N -0.88 -42.51 11.08 21.67 0.24 -42.27 16 7 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 8 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 9 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 C 0.50 21.84 7.06 86.65 0.61 22.45 16 12 O -0.62 -32.52 16.84 -4.13 -0.07 -32.58 16 13 C -0.27 -9.26 3.82 -20.00 -0.08 -9.33 16 14 C 0.29 9.19 11.09 85.50 0.95 10.14 16 15 N -0.58 -20.50 10.46 -324.24 -3.39 -23.89 16 16 C 0.62 21.78 8.33 179.49 1.49 23.28 16 17 O -0.57 -23.21 16.68 -4.90 -0.08 -23.29 16 18 N -0.49 -13.21 2.56 -655.80 -1.68 -14.88 16 19 C 0.12 2.33 5.61 86.38 0.48 2.82 16 20 C -0.19 -3.70 6.01 -10.79 -0.06 -3.76 16 21 C -0.17 -2.49 10.18 30.60 0.31 -2.18 16 22 C -0.15 -2.22 10.25 30.60 0.31 -1.90 16 23 C 0.24 6.45 9.87 84.36 0.83 7.28 16 24 H 0.06 2.27 7.57 -2.39 -0.02 2.25 16 25 H 0.05 2.20 7.21 -2.39 -0.02 2.18 16 26 H 0.05 1.81 6.68 -2.39 -0.02 1.79 16 27 H 0.28 12.45 8.31 -92.71 -0.77 11.68 16 28 H 0.19 5.35 8.06 -2.91 -0.02 5.33 16 29 H 0.10 2.19 7.37 -2.38 -0.02 2.17 16 30 H 0.13 1.65 7.76 -2.39 -0.02 1.63 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 1.38 8.03 -2.39 -0.02 1.36 16 33 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.21 4.40 8.05 -2.91 -0.02 4.37 16 Total: -1.00 -69.45 315.44 3.28 -66.16 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.10 Total: 13.43 kcal Atomic # 6 Polarization: 31.27 SS G_CDS: 7.13 Total: 38.40 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -6.82 Total: -103.19 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.15 Total: -55.88 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -69.45 3.28 -66.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197767377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.030 kcal (2) G-P(sol) polarization free energy of solvation -69.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds