Wall clock time and date at job start Mon Mar 30 2020 02:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36826 * 119.99833 * 2 1 4 4 H 1.08004 * 119.99874 * 155.98482 * 3 2 1 5 5 C 1.39076 * 120.00332 * 335.98688 * 3 2 1 6 6 N 1.31340 * 119.99801 * 357.03596 * 5 3 2 7 7 Si 1.86799 * 120.00214 * 177.03443 * 5 3 2 8 8 H 1.48501 * 109.46867 * 59.99968 * 7 5 3 9 9 H 1.48498 * 109.47087 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47030 * 300.00294 * 7 5 3 11 11 C 1.34773 * 120.00411 * 180.02562 * 2 1 3 12 12 O 1.21595 * 120.00625 * 175.26501 * 11 2 1 13 13 C 1.47762 * 119.99797 * 355.53329 * 11 2 1 14 14 C 1.39528 * 120.03899 * 186.30340 * 13 11 2 15 15 N 1.32024 * 119.94922 * 179.73201 * 14 13 11 16 16 C 1.32627 * 120.01951 * 0.54395 * 15 14 13 17 17 O 1.35494 * 119.96575 * 179.70646 * 16 15 14 18 18 C 1.42905 * 116.99945 * 0.02562 * 17 16 15 19 19 C 1.53780 * 113.61443 * 247.49577 * 18 17 16 20 20 C 1.53777 * 87.08081 * 220.02213 * 19 18 17 21 21 C 1.53779 * 87.08357 * 25.43368 * 20 19 18 22 22 C 1.39576 * 120.07078 * 359.73128 * 16 15 14 23 23 N 1.31573 * 120.04629 * 359.97438 * 22 16 15 24 24 H 1.08993 * 109.46773 * 216.39356 * 1 2 3 25 25 H 1.08999 * 109.47074 * 336.39450 * 1 2 3 26 26 H 1.09004 * 109.47098 * 96.39464 * 1 2 3 27 27 H 0.97002 * 120.00188 * 180.02562 * 6 5 3 28 28 H 1.08002 * 120.02323 * 0.02686 * 14 13 11 29 29 H 1.08997 * 112.84896 * 18.80313 * 18 17 16 30 30 H 1.09005 * 113.61374 * 334.56792 * 19 18 17 31 31 H 1.09002 * 113.61183 * 105.47000 * 19 18 17 32 32 H 1.09000 * 113.61130 * 270.88530 * 20 19 18 33 33 H 1.08997 * 113.62060 * 139.98524 * 20 19 18 34 34 H 1.09004 * 113.61614 * 220.02172 * 21 20 19 35 35 H 1.09003 * 113.69113 * 89.12861 * 21 20 19 36 36 H 1.07994 * 119.97220 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.1590 1.2255 0.3807 5 6 1.5440 2.3373 -0.4901 6 7 0.3378 2.2769 -1.0064 7 14 2.4467 3.9709 -0.4141 8 1 3.7116 3.8738 -1.1860 9 1 1.5916 5.0365 -0.9960 10 1 2.7542 4.3011 1.0007 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1689 -0.0874 13 6 1.4035 -2.4449 0.0986 14 6 2.1030 -3.6449 0.2306 15 7 1.4440 -4.7851 0.3243 16 6 0.1184 -4.7907 0.2821 17 8 -0.5566 -5.9621 0.3724 18 6 0.2234 -7.1513 0.5119 19 6 0.1504 -8.0827 -0.7096 20 6 0.1030 -9.2543 0.2853 21 6 -0.4849 -8.2632 1.3036 22 6 -0.5820 -3.5913 0.1443 23 7 0.0718 -2.4529 0.0565 24 1 -0.3632 -0.8272 0.6097 25 1 -0.3633 0.9417 0.4115 26 1 -0.3633 -0.1145 -1.0213 27 1 -0.0841 3.0805 -1.3486 28 1 3.1826 -3.6406 0.2609 29 1 1.2400 -6.9532 0.8515 30 1 -0.7635 -7.9676 -1.2924 31 1 1.0504 -8.0679 -1.3243 32 1 1.0872 -9.6322 0.5620 33 1 -0.5891 -10.0452 -0.0040 34 1 -0.0978 -8.3942 2.3141 35 1 -1.5725 -8.1966 1.2723 36 1 -1.6614 -3.5977 0.1105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199144856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:57 Heat of formation + Delta-G solvation = 29.056754 kcal Electronic energy + Delta-G solvation = -20957.552411 eV Core-core repulsion = 17637.653721 eV Total energy + Delta-G solvation = -3319.898690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05440 -39.51746 -38.06039 -36.53982 -34.86534 -33.79449 -31.67636 -30.38433 -26.41288 -26.09132 -25.91611 -24.86735 -23.97410 -23.28367 -20.09623 -19.85529 -18.69181 -17.66531 -16.90203 -16.08915 -15.80550 -15.57786 -15.41280 -15.00444 -14.35890 -14.26447 -14.07357 -13.60693 -13.19485 -12.72454 -12.61711 -12.32102 -12.12033 -11.83010 -11.61794 -11.47536 -11.43850 -11.06430 -10.89433 -10.70565 -10.54943 -10.45797 -10.38219 -10.02112 -9.11108 -8.95841 -8.40820 -8.32403 -7.73745 -6.41114 -3.95839 0.95818 1.36420 2.97696 3.13018 3.18279 3.22124 3.57670 4.00241 4.26408 4.30814 4.32019 4.40949 4.46013 4.60031 4.64418 4.77008 5.03778 5.12097 5.31345 5.42652 5.47699 5.51875 5.59475 5.69760 5.74428 5.85381 5.88126 6.02039 6.39665 6.96226 7.13196 7.23248 7.38062 7.45180 7.53311 7.96377 8.06880 8.40199 9.05039 9.28801 9.90018 10.53515 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.053494 B = 0.003529 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.294127 B = 7931.489731 C = 8286.728946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.401 5.401 3 C -0.296 4.296 4 H 0.103 0.897 5 C 0.031 3.969 6 N -0.861 5.861 7 Si 0.936 3.064 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.270 1.270 11 C 0.471 3.529 12 O -0.596 6.596 13 C 0.025 3.975 14 C 0.133 3.867 15 N -0.503 5.503 16 C 0.257 3.743 17 O -0.289 6.289 18 C 0.059 3.941 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.136 4.136 22 C 0.035 3.965 23 N -0.378 5.378 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.272 0.728 28 H 0.180 0.820 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -16.197 2.820 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.115 5.115 3 C -0.425 4.425 4 H 0.121 0.879 5 C -0.174 4.174 6 N -0.499 5.499 7 Si 0.761 3.239 8 H -0.194 1.194 9 H -0.207 1.207 10 H -0.196 1.196 11 C 0.260 3.740 12 O -0.483 6.483 13 C -0.114 4.114 14 C -0.028 4.028 15 N -0.231 5.231 16 C 0.074 3.926 17 O -0.195 6.195 18 C 0.002 3.998 19 C -0.190 4.190 20 C -0.176 4.176 21 C -0.174 4.174 22 C -0.129 4.129 23 N -0.096 5.096 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.197 0.803 29 H 0.134 0.866 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.722 -16.075 2.689 16.968 hybrid contribution 0.312 0.695 -0.130 0.773 sum -4.410 -15.380 2.559 16.203 Atomic orbital electron populations 1.22290 0.79388 1.01590 1.01383 1.43658 1.06967 1.04328 1.56565 1.19843 1.00328 0.84127 1.38250 0.87883 1.25554 0.96187 1.00530 0.95166 1.70026 1.13342 1.30085 1.36460 0.85842 0.79231 0.79795 0.78984 1.19439 1.20671 1.19561 1.17174 0.86820 0.81980 0.88042 1.90620 1.12825 1.85869 1.58971 1.22560 0.89977 0.97214 1.01608 1.23386 1.01680 0.85752 0.92014 1.67972 1.07306 1.30726 1.17083 1.21131 0.89200 0.87717 0.94506 1.86300 1.34544 1.12421 1.86218 1.24176 0.97174 0.80843 0.97617 1.23445 1.03233 0.95162 0.97154 1.22624 1.01715 0.96400 0.96890 1.23265 1.01562 0.93861 0.98698 1.23152 1.01859 0.85614 1.02275 1.69325 1.08327 1.24726 1.07244 0.91221 0.90454 0.93331 0.91698 0.80276 0.86617 0.89222 0.90805 0.89712 0.90505 0.90675 0.89021 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.31 7.72 59.85 0.46 2.77 16 2 N -0.40 -10.68 3.01 -123.31 -0.37 -11.06 16 3 C -0.30 -8.23 9.25 -15.01 -0.14 -8.37 16 4 H 0.10 2.92 7.45 -52.48 -0.39 2.53 16 5 C 0.03 0.81 5.25 -17.45 -0.09 0.72 16 6 N -0.86 -22.61 10.32 55.50 0.57 -22.03 16 7 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 8 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 11 C 0.47 12.10 7.60 -12.37 -0.09 12.01 16 12 O -0.60 -16.65 16.09 5.28 0.08 -16.56 16 13 C 0.03 0.54 6.63 -82.88 -0.55 -0.01 16 14 C 0.13 2.46 10.77 -16.99 -0.18 2.28 16 15 N -0.50 -8.45 8.74 -12.74 -0.11 -8.56 16 16 C 0.26 4.07 7.50 -16.71 -0.13 3.94 16 17 O -0.29 -3.98 10.13 -18.17 -0.18 -4.16 16 18 C 0.06 0.67 4.18 -25.92 -0.11 0.56 16 19 C -0.15 -1.46 7.91 -25.92 -0.21 -1.66 16 20 C -0.14 -1.04 8.08 -25.92 -0.21 -1.25 16 21 C -0.14 -1.18 7.91 -25.92 -0.21 -1.39 16 22 C 0.04 0.56 11.18 -17.16 -0.19 0.37 16 23 N -0.38 -7.33 6.14 -9.50 -0.06 -7.39 16 24 H 0.07 1.52 5.07 -54.92 -0.28 1.24 16 25 H 0.08 1.93 6.29 -51.93 -0.33 1.60 16 26 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.18 3.16 7.65 -52.49 -0.40 2.76 16 29 H 0.12 1.43 6.88 -51.93 -0.36 1.07 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -30.35 305.85 -6.39 -36.74 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.26 Total: 3.24 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -1.64 Total: 9.98 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.03 Total: -49.04 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.10 Total: -20.72 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.35 -6.39 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199144856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.793 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds