Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36826 * 119.99833 * 2 1 4 4 H 1.08004 * 119.99874 * 155.98482 * 3 2 1 5 5 C 1.39076 * 120.00332 * 335.98688 * 3 2 1 6 6 N 1.31340 * 119.99801 * 357.03596 * 5 3 2 7 7 Si 1.86799 * 120.00214 * 177.03443 * 5 3 2 8 8 H 1.48501 * 109.46867 * 59.99968 * 7 5 3 9 9 H 1.48498 * 109.47087 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47030 * 300.00294 * 7 5 3 11 11 C 1.34773 * 120.00411 * 180.02562 * 2 1 3 12 12 O 1.21595 * 120.00625 * 175.26501 * 11 2 1 13 13 C 1.47762 * 119.99797 * 355.53329 * 11 2 1 14 14 C 1.39528 * 120.03899 * 186.30340 * 13 11 2 15 15 N 1.32024 * 119.94922 * 179.73201 * 14 13 11 16 16 C 1.32627 * 120.01951 * 0.54395 * 15 14 13 17 17 O 1.35494 * 119.96575 * 179.70646 * 16 15 14 18 18 C 1.42905 * 116.99945 * 0.02562 * 17 16 15 19 19 C 1.53780 * 113.61443 * 247.49577 * 18 17 16 20 20 C 1.53777 * 87.08081 * 220.02213 * 19 18 17 21 21 C 1.53779 * 87.08357 * 25.43368 * 20 19 18 22 22 C 1.39576 * 120.07078 * 359.73128 * 16 15 14 23 23 N 1.31573 * 120.04629 * 359.97438 * 22 16 15 24 24 H 1.08993 * 109.46773 * 216.39356 * 1 2 3 25 25 H 1.08999 * 109.47074 * 336.39450 * 1 2 3 26 26 H 1.09004 * 109.47098 * 96.39464 * 1 2 3 27 27 H 0.97002 * 120.00188 * 180.02562 * 6 5 3 28 28 H 1.08002 * 120.02323 * 0.02686 * 14 13 11 29 29 H 1.08997 * 112.84896 * 18.80313 * 18 17 16 30 30 H 1.09005 * 113.61374 * 334.56792 * 19 18 17 31 31 H 1.09002 * 113.61183 * 105.47000 * 19 18 17 32 32 H 1.09000 * 113.61130 * 270.88530 * 20 19 18 33 33 H 1.08997 * 113.62060 * 139.98524 * 20 19 18 34 34 H 1.09004 * 113.61614 * 220.02172 * 21 20 19 35 35 H 1.09003 * 113.69113 * 89.12861 * 21 20 19 36 36 H 1.07994 * 119.97220 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.1590 1.2255 0.3807 5 6 1.5440 2.3373 -0.4901 6 7 0.3378 2.2769 -1.0064 7 14 2.4467 3.9709 -0.4141 8 1 3.7116 3.8738 -1.1860 9 1 1.5916 5.0365 -0.9960 10 1 2.7542 4.3011 1.0007 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1689 -0.0874 13 6 1.4035 -2.4449 0.0986 14 6 2.1030 -3.6449 0.2306 15 7 1.4440 -4.7851 0.3243 16 6 0.1184 -4.7907 0.2821 17 8 -0.5566 -5.9621 0.3724 18 6 0.2234 -7.1513 0.5119 19 6 0.1504 -8.0827 -0.7096 20 6 0.1030 -9.2543 0.2853 21 6 -0.4849 -8.2632 1.3036 22 6 -0.5820 -3.5913 0.1443 23 7 0.0718 -2.4529 0.0565 24 1 -0.3632 -0.8272 0.6097 25 1 -0.3633 0.9417 0.4115 26 1 -0.3633 -0.1145 -1.0213 27 1 -0.0841 3.0805 -1.3486 28 1 3.1826 -3.6406 0.2609 29 1 1.2400 -6.9532 0.8515 30 1 -0.7635 -7.9676 -1.2924 31 1 1.0504 -8.0679 -1.3243 32 1 1.0872 -9.6322 0.5620 33 1 -0.5891 -10.0452 -0.0040 34 1 -0.0978 -8.3942 2.3141 35 1 -1.5725 -8.1966 1.2723 36 1 -1.6614 -3.5977 0.1105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199144856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = 8.554130 kcal Electronic energy + Delta-G solvation = -20958.441471 eV Core-core repulsion = 17637.653721 eV Total energy + Delta-G solvation = -3320.787750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.47678 -40.71589 -39.75958 -37.61700 -36.84869 -35.29229 -33.62414 -31.88730 -28.32612 -27.41882 -26.64203 -26.48898 -25.34938 -24.70941 -21.81106 -20.76006 -19.87027 -19.26241 -18.71308 -17.81575 -17.21190 -17.01844 -16.43336 -16.31705 -15.95823 -15.87965 -15.72002 -15.10955 -14.61852 -14.25693 -13.78498 -13.53686 -13.52765 -13.41518 -13.24340 -12.77888 -12.72550 -12.54668 -12.37408 -12.16029 -12.12683 -11.75948 -11.33226 -11.26383 -11.01546 -10.87235 -10.09489 -9.82180 -9.66378 -8.34777 -6.04591 -0.52227 -0.05947 1.40756 1.41417 1.53020 1.77930 1.90988 2.22792 2.69227 2.77328 2.93849 3.13303 3.23319 3.44654 3.57963 3.58639 3.87247 3.95337 3.97801 4.18878 4.44340 4.52016 4.77282 4.78573 4.87185 4.98675 5.03912 5.07853 5.09937 5.23750 5.37636 5.40197 5.54418 5.95450 6.03706 6.05582 6.37899 6.60908 7.04795 7.33287 7.91034 8.58998 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.053494 B = 0.003529 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.294127 B = 7931.489731 C = 8286.728946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.424 5.424 3 C -0.345 4.345 4 H 0.082 0.918 5 C -0.002 4.002 6 N -0.883 5.883 7 Si 1.001 2.999 8 H -0.274 1.274 9 H -0.266 1.266 10 H -0.263 1.263 11 C 0.468 3.532 12 O -0.629 6.629 13 C -0.005 4.005 14 C 0.144 3.856 15 N -0.501 5.501 16 C 0.281 3.719 17 O -0.282 6.282 18 C 0.036 3.964 19 C -0.153 4.153 20 C -0.126 4.126 21 C -0.129 4.129 22 C 0.045 3.955 23 N -0.390 5.390 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.278 0.722 28 H 0.184 0.816 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -18.372 3.132 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.138 5.138 3 C -0.473 4.473 4 H 0.100 0.900 5 C -0.205 4.205 6 N -0.521 5.521 7 Si 0.823 3.177 8 H -0.199 1.199 9 H -0.191 1.191 10 H -0.187 1.187 11 C 0.258 3.742 12 O -0.518 6.518 13 C -0.142 4.142 14 C -0.016 4.016 15 N -0.230 5.230 16 C 0.096 3.904 17 O -0.187 6.187 18 C -0.020 4.020 19 C -0.191 4.191 20 C -0.164 4.164 21 C -0.166 4.166 22 C -0.121 4.121 23 N -0.108 5.108 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.201 0.799 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.212 -18.263 3.005 19.523 hybrid contribution 0.652 0.956 -0.219 1.178 sum -5.560 -17.307 2.787 18.390 Atomic orbital electron populations 1.22124 0.78217 1.01569 1.00650 1.43842 1.07766 1.04398 1.57808 1.19851 1.00363 0.85764 1.41332 0.89994 1.26355 0.96890 1.03271 0.94029 1.70102 1.14147 1.31175 1.36635 0.84888 0.77856 0.75709 0.79239 1.19885 1.19072 1.18739 1.17816 0.86789 0.83279 0.86342 1.90561 1.14501 1.86950 1.59832 1.21916 0.90872 0.95784 1.05613 1.23333 1.01876 0.85329 0.91031 1.68090 1.07926 1.29478 1.17538 1.21385 0.88855 0.88778 0.91361 1.86344 1.34734 1.12376 1.85217 1.24647 0.97084 0.80273 0.99969 1.23484 1.03226 0.95519 0.96852 1.22622 1.02622 0.95948 0.95185 1.23292 1.01794 0.92323 0.99203 1.23731 1.03392 0.84509 1.00489 1.69067 1.07599 1.26833 1.07254 0.88994 0.92049 0.94868 0.91180 0.79947 0.87609 0.88960 0.91193 0.88828 0.88704 0.89773 0.88345 0.77058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.74 7.72 127.77 0.99 6.73 16 2 N -0.42 -23.51 3.01 -662.31 -2.00 -25.50 16 3 C -0.34 -20.06 9.25 84.12 0.78 -19.28 16 4 H 0.08 4.95 7.45 -2.91 -0.02 4.92 16 5 C 0.00 -0.11 5.25 84.97 0.45 0.34 16 6 N -0.88 -47.32 10.32 21.68 0.22 -47.10 16 7 Si 1.00 42.20 29.55 68.60 2.03 44.22 16 8 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 9 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 11 C 0.47 24.99 7.60 86.76 0.66 25.65 16 12 O -0.63 -36.81 16.09 -4.02 -0.06 -36.87 16 13 C 0.00 -0.21 6.63 41.76 0.28 0.07 16 14 C 0.14 5.28 10.77 84.98 0.91 6.20 16 15 N -0.50 -16.01 8.74 -306.99 -2.68 -18.69 16 16 C 0.28 8.12 7.50 84.90 0.64 8.76 16 17 O -0.28 -6.82 10.13 -87.95 -0.89 -7.71 16 18 C 0.04 0.72 4.18 31.12 0.13 0.85 16 19 C -0.15 -2.48 7.91 31.12 0.25 -2.23 16 20 C -0.13 -1.43 8.08 31.12 0.25 -1.18 16 21 C -0.13 -1.77 7.91 31.12 0.25 -1.52 16 22 C 0.05 1.33 11.18 85.05 0.95 2.28 16 23 N -0.39 -14.73 6.14 -183.96 -1.13 -15.86 16 24 H 0.09 4.02 5.07 -8.29 -0.04 3.98 16 25 H 0.06 3.15 6.29 -2.39 -0.02 3.14 16 26 H 0.03 1.68 7.98 -2.38 -0.02 1.66 16 27 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.18 6.51 7.65 -2.91 -0.02 6.49 16 29 H 0.11 2.37 6.88 -2.39 -0.02 2.35 16 30 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.21 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -68.07 305.85 3.08 -64.99 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.07 Total: 15.88 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 6.52 Total: 26.65 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -5.59 Total: -107.15 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.96 Total: -44.59 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.07 3.08 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199144856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.539 kcal (2) G-P(sol) polarization free energy of solvation -68.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds