Wall clock time and date at job start Mon Mar 30 2020 02:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36678 * 120.00143 * 2 1 4 4 H 1.07998 * 120.00519 * 149.76432 * 3 2 1 5 5 C 1.39179 * 119.99529 * 329.75702 * 3 2 1 6 6 N 1.31277 * 119.99466 * 162.93945 * 5 3 2 7 7 Si 1.86795 * 120.00216 * 342.93621 * 5 3 2 8 8 H 1.48498 * 109.46985 * 88.49651 * 7 5 3 9 9 H 1.48506 * 109.47044 * 208.49219 * 7 5 3 10 10 H 1.48496 * 109.47313 * 328.49156 * 7 5 3 11 11 C 1.34785 * 119.99705 * 179.97438 * 2 1 3 12 12 O 1.21540 * 119.99521 * 185.19541 * 11 2 1 13 13 C 1.48317 * 120.00031 * 5.19589 * 11 2 1 14 14 N 1.32536 * 119.17181 * 354.08236 * 13 11 2 15 15 C 1.32248 * 120.90398 * 180.27484 * 14 13 11 16 16 C 1.38451 * 119.25204 * 0.02562 * 15 14 13 17 17 C 1.39567 * 118.48096 * 359.97438 * 16 15 14 18 18 O 1.35525 * 120.47922 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00171 * 180.02562 * 18 17 16 20 20 C 1.53781 * 113.61288 * 247.49438 * 19 18 17 21 21 C 1.53778 * 87.08091 * 220.02167 * 20 19 18 22 22 C 1.53784 * 87.08504 * 25.43157 * 21 20 19 23 23 N 1.32554 * 119.16796 * 174.34857 * 13 11 2 24 24 H 1.08998 * 109.47565 * 235.15288 * 1 2 3 25 25 H 1.08999 * 109.47276 * 355.15980 * 1 2 3 26 26 H 1.09000 * 109.46944 * 115.15459 * 1 2 3 27 27 H 0.97004 * 120.00063 * 180.02562 * 6 5 3 28 28 H 1.07996 * 120.36922 * 180.02562 * 15 14 13 29 29 H 1.07998 * 120.76166 * 180.02562 * 16 15 14 30 30 H 1.08997 * 112.84809 * 18.80629 * 19 18 17 31 31 H 1.09000 * 113.61693 * 334.56729 * 20 19 18 32 32 H 1.08997 * 113.61385 * 105.47260 * 20 19 18 33 33 H 1.09001 * 113.61624 * 270.88781 * 21 20 19 34 34 H 1.08994 * 113.61803 * 139.98239 * 21 20 19 35 35 H 1.08993 * 113.61490 * 220.02115 * 22 21 20 36 36 H 1.08999 * 113.68857 * 89.12570 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1484 1.1836 0.0000 4 1 3.1182 1.2473 0.4710 5 6 1.5945 2.3069 -0.6071 6 7 2.0651 3.5011 -0.3315 7 14 0.1818 2.1153 -1.8140 8 1 -1.1068 2.1457 -1.0765 9 1 0.2160 3.2280 -2.7969 10 1 0.3130 0.8199 -2.5281 11 6 2.1389 -1.1673 0.0005 12 8 3.3505 -1.1694 0.0958 13 6 1.4018 -2.4491 -0.1152 14 7 0.0766 -2.4361 -0.0992 15 6 -0.6150 -3.5593 -0.1946 16 6 0.0608 -4.7619 -0.3121 17 6 1.4563 -4.7426 -0.3260 18 8 2.1586 -5.8962 -0.4388 19 6 3.5837 -5.7902 -0.4445 20 6 4.2236 -6.1619 -1.7926 21 6 5.3282 -6.8640 -0.9853 22 6 4.2953 -7.0204 0.1432 23 7 2.0851 -3.5795 -0.2267 24 1 -0.3634 -0.5872 0.8433 25 1 -0.3634 1.0240 0.0867 26 1 -0.3633 -0.4368 -0.9302 27 1 1.6788 4.2840 -0.7543 28 1 -1.6946 -3.5386 -0.1811 29 1 -0.4795 -5.6936 -0.3921 30 1 3.9394 -4.8439 -0.0369 31 1 3.6187 -6.8442 -2.3897 32 1 4.5775 -5.3012 -2.3600 33 1 6.1619 -6.2112 -0.7265 34 1 5.6497 -7.8116 -1.4173 35 1 4.7070 -6.8526 1.1383 36 1 3.7092 -7.9370 0.0765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199633608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:10 Heat of formation + Delta-G solvation = 13.495320 kcal Electronic energy + Delta-G solvation = -21373.566336 eV Core-core repulsion = 18052.992852 eV Total energy + Delta-G solvation = -3320.573484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.44706 -40.78035 -39.92527 -37.72931 -36.99028 -34.44878 -34.14046 -32.66327 -28.38521 -27.98735 -26.76125 -26.63195 -25.54015 -24.45672 -21.93255 -20.83319 -19.82017 -19.14403 -18.62639 -17.80780 -17.45929 -17.14929 -16.60720 -16.43392 -16.26845 -15.86220 -15.72518 -14.95552 -14.79099 -14.48798 -14.32396 -14.00695 -13.80528 -13.56297 -13.47924 -12.79965 -12.55147 -12.40933 -12.35382 -11.93729 -11.73533 -11.68975 -11.44247 -11.25020 -11.22461 -10.62787 -10.33630 -10.12166 -9.89152 -8.61017 -6.20023 -0.55076 0.13184 1.22058 1.32351 1.45939 1.72676 1.78125 2.11911 2.13840 2.71271 2.96447 3.03254 3.26193 3.47555 3.52493 3.74321 3.79987 3.94309 4.01261 4.20853 4.39136 4.41536 4.56716 4.69036 4.71086 4.71571 4.91772 4.93945 4.96584 5.02339 5.15406 5.34633 5.39718 5.75807 5.90345 6.09345 6.34615 6.69993 6.92026 7.11483 7.66485 8.54492 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.004879 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.410353 B = 5737.123740 C = 6407.525730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.437 5.437 3 C -0.342 4.342 4 H 0.056 0.944 5 C 0.016 3.984 6 N -0.895 5.895 7 Si 0.963 3.037 8 H -0.226 1.226 9 H -0.284 1.284 10 H -0.266 1.266 11 C 0.491 3.509 12 O -0.599 6.599 13 C 0.324 3.676 14 N -0.524 5.524 15 C 0.170 3.830 16 C -0.218 4.218 17 C 0.335 3.665 18 O -0.285 6.285 19 C 0.035 3.965 20 C -0.151 4.151 21 C -0.127 4.127 22 C -0.122 4.122 23 N -0.564 5.564 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.288 0.712 28 H 0.236 0.764 29 H 0.197 0.803 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 -21.467 -2.504 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.156 5.156 3 C -0.470 4.470 4 H 0.074 0.926 5 C -0.189 4.189 6 N -0.531 5.531 7 Si 0.785 3.215 8 H -0.150 1.150 9 H -0.210 1.210 10 H -0.191 1.191 11 C 0.278 3.722 12 O -0.483 6.483 13 C 0.055 3.945 14 N -0.247 5.247 15 C 0.008 3.992 16 C -0.241 4.241 17 C 0.148 3.852 18 O -0.190 6.190 19 C -0.021 4.021 20 C -0.189 4.189 21 C -0.164 4.164 22 C -0.159 4.159 23 N -0.295 5.295 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.252 0.748 29 H 0.215 0.785 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.684 -20.711 -2.408 22.221 hybrid contribution 0.059 0.035 -0.367 0.374 sum -7.625 -20.676 -2.776 22.211 Atomic orbital electron populations 1.22500 0.78525 1.01882 1.04226 1.43590 1.07119 1.03935 1.60974 1.18893 1.04697 0.85892 1.37497 0.92601 1.26253 1.01484 0.93419 0.97698 1.69738 1.43552 0.98997 1.40830 0.85781 0.79307 0.78122 0.78329 1.15010 1.21038 1.19074 1.17752 0.86268 0.82859 0.85324 1.90602 1.15174 1.86645 1.55876 1.22208 0.87518 0.91302 0.93443 1.68971 1.06324 1.32516 1.16860 1.24194 1.03164 0.85012 0.86780 1.22590 0.90405 1.03866 1.07242 1.20621 0.90937 0.84836 0.88782 1.86312 1.21667 1.25246 1.85769 1.24514 0.76121 1.01264 1.00191 1.23475 0.98254 1.01085 0.96075 1.22609 0.95711 1.02133 0.95952 1.23268 0.96345 0.96774 0.99556 1.67687 1.43076 0.98953 1.19793 0.88580 0.91435 0.90534 0.90209 0.74833 0.78540 0.89543 0.87921 0.92405 0.89832 0.87768 0.90231 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.86 6.63 127.77 0.85 3.71 16 2 N -0.44 -23.18 2.74 -661.72 -1.81 -24.99 16 3 C -0.34 -20.84 9.60 84.16 0.81 -20.03 16 4 H 0.06 3.96 7.71 -2.91 -0.02 3.94 16 5 C 0.02 0.90 5.26 85.00 0.45 1.34 16 6 N -0.89 -52.70 13.95 21.70 0.30 -52.40 16 7 Si 0.96 41.58 24.29 68.60 1.67 43.25 16 8 H -0.23 -8.24 6.48 99.48 0.64 -7.59 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.27 -11.53 6.75 99.48 0.67 -10.86 16 11 C 0.49 26.59 7.64 86.93 0.66 27.25 16 12 O -0.60 -37.72 16.63 -3.84 -0.06 -37.78 16 13 C 0.32 13.95 7.53 137.57 1.04 14.99 16 14 N -0.52 -17.34 5.98 -189.38 -1.13 -18.47 16 15 C 0.17 3.59 11.29 84.68 0.96 4.54 16 16 C -0.22 -4.61 10.14 22.64 0.23 -4.38 16 17 C 0.33 10.36 7.53 84.90 0.64 11.00 16 18 O -0.29 -7.90 10.14 -88.28 -0.90 -8.79 16 19 C 0.04 0.96 4.19 31.12 0.13 1.09 16 20 C -0.15 -3.42 7.91 31.12 0.25 -3.17 16 21 C -0.13 -2.20 8.08 31.12 0.25 -1.95 16 22 C -0.12 -2.31 7.91 31.12 0.25 -2.06 16 23 N -0.56 -23.03 8.45 -302.13 -2.55 -25.58 16 24 H 0.10 3.45 6.88 -2.39 -0.02 3.43 16 25 H 0.07 2.74 4.29 -2.39 -0.01 2.73 16 26 H 0.08 2.85 6.18 -2.39 -0.01 2.84 16 27 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.09 3.04 6.91 -2.39 -0.02 3.02 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -81.04 301.47 3.02 -78.02 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.01 Total: 14.41 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: 6.50 Total: 32.33 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -5.19 Total: -121.44 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.96 Total: -46.57 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.67 Total: 43.25 kcal Total: -81.04 3.02 -78.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199633608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.516 kcal (2) G-P(sol) polarization free energy of solvation -81.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds