Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46606 * 2 1 4 4 N 1.46501 * 109.46886 * 240.00023 * 2 1 3 5 5 C 1.34774 * 119.99796 * 85.00440 * 4 2 1 6 6 O 1.21583 * 120.00387 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00055 * 180.02562 * 5 4 2 8 8 C 1.39953 * 120.00462 * 184.52276 * 7 5 4 9 9 C 1.39285 * 119.95377 * 144.36219 * 8 7 5 10 10 C 1.38491 * 120.43242 * 179.97438 * 9 8 7 11 11 C 1.37675 * 120.31983 * 359.97438 * 10 9 8 12 12 C 1.40742 * 119.88461 * 0.02562 * 11 10 9 13 13 C 1.41412 * 120.20825 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99693 * 155.37150 * 13 12 11 15 15 C 1.39937 * 120.00145 * 335.36900 * 13 12 11 16 16 N 1.30827 * 119.99798 * 344.60265 * 15 13 12 17 17 Si 1.86800 * 119.99918 * 164.59648 * 15 13 12 18 18 H 1.48507 * 109.46765 * 60.00450 * 17 15 13 19 19 H 1.48496 * 109.46983 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47347 * 300.00578 * 17 15 13 21 21 C 1.38239 * 119.94341 * 324.08599 * 8 7 5 22 22 C 1.50693 * 109.47035 * 120.00150 * 2 1 3 23 23 N 1.34781 * 120.00170 * 299.99919 * 22 2 1 24 24 O 1.21280 * 120.00366 * 120.00256 * 22 2 1 25 25 H 1.08995 * 109.46955 * 59.99760 * 1 2 3 26 26 H 1.08996 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46498 * 299.99835 * 1 2 3 28 28 H 0.96991 * 120.00072 * 264.99857 * 4 2 1 29 29 H 0.97007 * 119.99774 * 4.51527 * 7 5 4 30 30 H 1.08005 * 119.78056 * 0.02562 * 9 8 7 31 31 H 1.08001 * 119.83849 * 179.97438 * 10 9 8 32 32 H 1.08006 * 120.05771 * 179.97438 * 11 10 9 33 33 H 0.97000 * 119.99983 * 179.97438 * 16 15 13 34 34 H 1.08001 * 120.15793 * 359.97438 * 21 8 7 35 35 H 0.97003 * 119.99586 * 359.97438 * 23 22 2 36 36 H 0.96996 * 120.00061 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8576 1.1614 -2.4118 7 7 2.5958 -0.6536 -3.4577 8 6 2.8197 0.0644 -4.6380 9 6 3.8804 -0.2815 -5.4719 10 6 4.1106 0.4219 -6.6424 11 6 3.2923 1.4714 -6.9950 12 6 2.2165 1.8323 -6.1624 13 6 1.3720 2.9094 -6.5177 14 1 0.3609 2.9500 -6.1404 15 6 1.8464 3.9228 -7.3580 16 7 3.1310 4.0466 -7.5727 17 14 0.6455 5.0986 -8.1734 18 1 -0.1198 5.8270 -7.1297 19 1 1.3950 6.0717 -9.0079 20 1 -0.2933 4.3316 -9.0308 21 6 1.9841 1.1121 -4.9773 22 6 2.0324 -0.7104 1.2304 23 7 1.7068 -0.2500 2.4546 24 8 2.7297 -1.6965 1.1192 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 2.2491 -1.6317 -1.1527 29 1 2.7638 -1.6087 -3.4318 30 1 4.5270 -1.1041 -5.2042 31 1 4.9362 0.1459 -7.2817 32 1 3.4760 2.0173 -7.9087 33 1 3.4599 4.7488 -8.1555 34 1 1.1584 1.3779 -4.3338 35 1 1.1494 0.5389 2.5435 36 1 2.0304 -0.7070 3.2465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205390295.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -74.501325 kcal Electronic energy + Delta-G solvation = -20779.532228 eV Core-core repulsion = 17455.142924 eV Total energy + Delta-G solvation = -3324.389305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71380 -40.57112 -39.06827 -36.42076 -35.87052 -34.96599 -34.69617 -31.71578 -31.60771 -29.39849 -27.22031 -25.77983 -23.49634 -22.70754 -21.75513 -21.36369 -19.75747 -19.53746 -18.60183 -17.49924 -17.26812 -16.94238 -16.74360 -16.40986 -15.94851 -15.80408 -15.52672 -14.94945 -14.68501 -14.57176 -14.06364 -13.74297 -13.52368 -13.33086 -13.12047 -12.79253 -12.68102 -12.54742 -12.19726 -11.97973 -11.57198 -11.29710 -11.14813 -11.00530 -10.74289 -10.64991 -10.26575 -9.35517 -8.68214 -8.57435 -6.33557 0.95790 1.06386 1.38243 1.44779 1.49668 1.51784 1.54542 2.14752 2.24037 2.49847 2.77439 3.24630 3.78045 3.80646 4.00825 4.11435 4.50204 4.61279 4.67545 4.76593 5.07642 5.13388 5.16489 5.20620 5.21728 5.33363 5.38430 5.71283 5.82437 5.86200 6.08144 6.15446 6.18468 6.31780 6.39620 6.72432 6.97895 7.02777 7.05833 7.20903 7.56179 8.37458 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024743 B = 0.003980 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.382310 B = 7032.761066 C = 7879.454564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 H 0.108 0.892 4 N -0.719 5.719 5 C 0.700 3.300 6 O -0.609 6.609 7 N -0.670 5.670 8 C 0.172 3.828 9 C -0.253 4.253 10 C -0.091 4.091 11 C -0.200 4.200 12 C 0.088 3.912 13 C -0.500 4.500 14 H 0.067 0.933 15 C 0.034 3.966 16 N -0.826 5.826 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.263 1.263 20 H -0.258 1.258 21 C -0.234 4.234 22 C 0.524 3.476 23 N -0.823 5.823 24 O -0.579 6.579 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.412 0.588 29 H 0.417 0.583 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.288 0.712 34 H 0.093 0.907 35 H 0.420 0.580 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -7.501 15.349 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.028 3.972 3 H 0.125 0.875 4 N -0.377 5.377 5 C 0.400 3.600 6 O -0.488 6.488 7 N -0.318 5.318 8 C 0.079 3.921 9 C -0.274 4.274 10 C -0.110 4.110 11 C -0.220 4.220 12 C 0.085 3.915 13 C -0.530 4.530 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.453 5.453 17 Si 0.805 3.195 18 H -0.188 1.188 19 H -0.187 1.187 20 H -0.182 1.182 21 C -0.256 4.256 22 C 0.307 3.693 23 N -0.388 5.388 24 O -0.458 6.458 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.124 0.876 28 H 0.250 0.750 29 H 0.254 0.746 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.252 0.748 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.825 -6.906 15.025 16.973 hybrid contribution -0.224 0.034 -0.013 0.227 sum -4.049 -6.872 15.012 17.000 Atomic orbital electron populations 1.22143 0.91214 1.03611 1.04282 1.20737 0.96789 0.97458 0.82188 0.87469 1.44675 1.71462 1.14477 1.07114 1.16028 0.78368 0.84683 0.80893 1.90960 1.56961 1.16110 1.84759 1.42297 1.69108 1.11845 1.08535 1.17300 0.94903 0.94242 0.85702 1.20444 1.00823 1.06924 0.99236 1.20812 0.98519 0.95186 0.96511 1.21381 0.99836 0.99561 1.01259 1.17855 0.92416 0.91489 0.89752 1.19760 0.99696 1.06114 1.27416 0.91485 1.26754 0.97242 0.99284 0.94709 1.69869 1.15355 1.30238 1.29805 0.85227 0.78441 0.77244 0.78581 1.18803 1.18743 1.18230 1.21051 1.03492 1.02940 0.98082 1.20451 0.79009 0.83625 0.86171 1.43531 1.54804 1.33922 1.06589 1.90735 1.39634 1.28155 1.87302 0.92926 0.91125 0.87572 0.75044 0.74589 0.85397 0.86013 0.87489 0.90131 0.88886 0.74778 0.75246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.38 71.99 0.68 -2.03 16 2 C 0.14 3.03 2.98 44.25 0.13 3.16 16 3 H 0.11 2.62 7.58 -2.39 -0.02 2.60 16 4 N -0.72 -19.69 4.96 -461.41 -2.29 -21.97 16 5 C 0.70 26.22 8.37 179.06 1.50 27.72 16 6 O -0.61 -28.69 13.49 -3.98 -0.05 -28.74 16 7 N -0.67 -24.48 5.34 -317.33 -1.69 -26.18 16 8 C 0.17 8.00 6.28 38.10 0.24 8.24 16 9 C -0.25 -11.00 9.97 22.58 0.23 -10.78 16 10 C -0.09 -4.29 10.02 22.20 0.22 -4.07 16 11 C -0.20 -11.00 8.69 22.75 0.20 -10.80 16 12 C 0.09 5.12 5.58 -21.31 -0.12 5.00 16 13 C -0.50 -29.21 9.06 23.46 0.21 -28.99 16 14 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 15 C 0.03 1.83 5.19 85.25 0.44 2.27 16 16 N -0.83 -45.25 10.82 21.82 0.24 -45.01 16 17 Si 0.98 40.25 29.59 68.60 2.03 42.28 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 C -0.23 -12.83 8.43 22.85 0.19 -12.64 16 22 C 0.52 10.04 7.49 87.65 0.66 10.70 16 23 N -0.82 -7.63 8.77 -173.53 -1.52 -9.15 16 24 O -0.58 -15.55 16.67 -3.03 -0.05 -15.60 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.11 1.03 7.56 -2.39 -0.02 1.01 16 28 H 0.41 9.82 7.81 -92.71 -0.72 9.10 16 29 H 0.42 11.48 8.84 -92.70 -0.82 10.66 16 30 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.11 6.07 6.07 -2.91 -0.02 6.05 16 33 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 34 H 0.09 5.37 6.27 -2.91 -0.02 5.35 16 35 H 0.42 1.43 8.25 -92.71 -0.76 0.67 16 36 H 0.41 2.79 8.93 -92.71 -0.83 1.96 16 Total: -1.00 -78.12 312.28 -0.73 -78.86 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -1.97 Total: 37.74 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.58 Total: -12.22 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -5.27 Total: -102.31 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.10 Total: -44.35 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -78.12 -0.73 -78.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205390295.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.354 kcal (2) G-P(sol) polarization free energy of solvation -78.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds