Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47271 * 2 1 4 4 C 1.36704 * 120.00141 * 96.31045 * 3 2 1 5 5 H 1.08003 * 120.00021 * 163.31075 * 4 3 2 6 6 C 1.39173 * 119.99640 * 343.31582 * 4 3 2 7 7 N 1.31276 * 119.99939 * 344.13860 * 6 4 3 8 8 Si 1.86800 * 119.99529 * 164.14249 * 6 4 3 9 9 H 1.48494 * 109.47434 * 89.99901 * 8 6 4 10 10 H 1.48501 * 109.46688 * 209.99732 * 8 6 4 11 11 H 1.48497 * 109.47331 * 329.99420 * 8 6 4 12 12 C 1.34775 * 119.99917 * 276.31797 * 3 2 1 13 13 O 1.21539 * 119.99755 * 183.57359 * 12 3 2 14 14 C 1.48239 * 120.00010 * 3.57011 * 12 3 2 15 15 C 1.39331 * 120.52704 * 187.23085 * 14 12 3 16 16 C 1.39514 * 118.19744 * 179.97438 * 15 14 12 17 17 O 1.35523 * 120.47869 * 180.02562 * 16 15 14 18 18 N 1.32708 * 119.03232 * 0.28602 * 16 15 14 19 19 C 1.31869 * 120.96011 * 359.42694 * 18 16 15 20 20 C 1.50700 * 118.99665 * 180.29761 * 19 18 16 21 21 C 1.52996 * 117.50344 * 9.02599 * 20 19 18 22 22 C 1.52996 * 117.50026 * 300.36369 * 20 19 18 23 23 N 1.31542 * 121.99702 * 0.58429 * 19 18 16 24 24 H 1.08999 * 109.47104 * 299.99867 * 1 2 3 25 25 H 1.08997 * 109.47265 * 60.00109 * 1 2 3 26 26 H 1.09008 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47104 * 240.00132 * 2 1 3 28 28 H 1.08997 * 109.47265 * 119.99891 * 2 1 3 29 29 H 0.97003 * 119.99398 * 180.02562 * 7 6 4 30 30 H 1.08005 * 120.89583 * 0.02562 * 15 14 12 31 31 H 0.96701 * 113.99571 * 90.00728 * 17 16 15 32 32 H 1.09004 * 115.54716 * 154.69863 * 20 19 18 33 33 H 1.08998 * 117.49903 * 0.02562 * 21 20 19 34 34 H 1.08996 * 117.49865 * 145.01747 * 21 20 19 35 35 H 1.09005 * 117.49995 * 214.98417 * 22 20 19 36 36 H 1.09000 * 117.50069 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3689 1.9823 1.1767 5 1 2.9713 2.8786 1.1667 6 6 1.9495 1.4390 2.3875 7 7 0.9799 0.5543 2.4091 8 14 2.7664 1.9690 3.9816 9 1 2.0454 3.1401 4.5418 10 1 2.7236 0.8490 4.9558 11 1 4.1795 2.3390 3.7146 12 6 2.1218 2.0593 -1.1601 13 8 2.5878 3.1818 -1.1683 14 6 1.6675 1.4361 -2.4261 15 6 1.9050 2.0618 -3.6481 16 6 1.4567 1.4319 -4.8094 17 8 1.6634 1.9992 -6.0227 18 7 0.8205 0.2717 -4.7081 19 6 0.6197 -0.2916 -3.5328 20 6 -0.1021 -1.6131 -3.4698 21 6 -0.3771 -2.3317 -4.7922 22 6 -1.5254 -1.6679 -4.0282 23 7 1.0255 0.2675 -2.4135 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.6875 0.1759 3.2531 30 1 2.4228 3.0085 -3.6950 31 1 2.4949 1.7387 -6.4421 32 1 0.1210 -2.2295 -2.5989 33 1 -0.0356 -1.8489 -5.7078 34 1 -0.3352 -3.4208 -4.7913 35 1 -2.2387 -2.3207 -3.5250 36 1 -1.9400 -0.7481 -4.4408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261547797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = 38.161542 kcal Electronic energy + Delta-G solvation = -21901.040431 eV Core-core repulsion = 18581.536554 eV Total energy + Delta-G solvation = -3319.503876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96701 -38.51326 -37.73586 -36.42249 -35.23057 -32.97532 -31.70310 -30.86201 -29.32728 -26.05993 -24.73419 -23.90448 -22.33189 -22.15755 -21.50177 -19.48940 -18.45647 -17.73737 -16.81634 -16.11029 -15.59736 -15.37835 -15.11425 -14.71808 -14.40900 -14.04483 -13.94555 -13.34533 -12.81286 -12.75001 -12.18670 -11.96333 -11.81394 -11.46002 -11.29612 -11.16148 -10.84834 -10.62993 -10.52802 -10.43626 -10.32465 -10.23481 -10.08763 -9.53934 -9.07054 -9.01418 -8.84176 -8.39051 -7.80361 -6.51588 -3.98183 1.00778 1.16760 3.03630 3.13750 3.19565 3.36580 3.54168 3.90925 3.97407 4.07940 4.43822 4.46807 4.92625 5.00003 5.04506 5.12845 5.19428 5.32491 5.50184 5.69308 5.76399 5.91304 5.99788 6.18764 6.27679 6.43916 6.62384 6.81423 6.91946 7.13450 7.24284 7.26501 7.42389 7.50394 7.86586 7.92247 8.31424 8.44289 8.97301 9.19874 9.83148 10.38117 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.005847 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.779440 B = 4787.626606 C = 5864.948322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.128 3.872 3 N -0.388 5.388 4 C -0.294 4.294 5 H 0.109 0.891 6 C 0.032 3.968 7 N -0.839 5.839 8 Si 0.933 3.067 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.266 1.266 12 C 0.453 3.547 13 O -0.594 6.594 14 C 0.176 3.824 15 C -0.209 4.209 16 C 0.348 3.652 17 O -0.477 6.477 18 N -0.549 5.549 19 C 0.356 3.644 20 C -0.093 4.093 21 C -0.157 4.157 22 C -0.156 4.156 23 N -0.482 5.482 24 H 0.085 0.915 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.273 0.727 30 H 0.156 0.844 31 H 0.402 0.598 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 -6.891 -9.225 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.005 3.995 3 N -0.101 5.101 4 C -0.423 4.423 5 H 0.127 0.873 6 C -0.175 4.175 7 N -0.476 5.476 8 Si 0.758 3.242 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.191 1.191 12 C 0.242 3.758 13 O -0.481 6.481 14 C 0.030 3.970 15 C -0.234 4.234 16 C 0.162 3.838 17 O -0.284 6.284 18 N -0.275 5.275 19 C 0.089 3.911 20 C -0.113 4.113 21 C -0.195 4.195 22 C -0.194 4.194 23 N -0.201 5.201 24 H 0.103 0.897 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.173 0.827 31 H 0.260 0.740 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.130 -6.989 -8.922 11.532 hybrid contribution 1.042 0.794 0.480 1.395 sum -1.088 -6.194 -8.442 10.527 Atomic orbital electron populations 1.22003 0.95832 0.99469 1.01500 1.21650 0.95661 0.81819 1.00358 1.43905 1.49415 1.11659 1.05112 1.19988 1.29373 1.11057 0.81924 0.87291 1.25538 0.95302 0.96552 1.00122 1.70095 1.22660 1.27258 1.27605 0.85819 0.80011 0.78373 0.79961 1.19948 1.20450 1.19053 1.17275 0.89713 0.86275 0.82553 1.90611 1.52878 1.19326 1.85325 1.22119 0.90716 0.89013 0.95122 1.22816 1.04373 1.04181 0.92062 1.19213 0.91393 0.87773 0.85452 1.84723 1.45485 1.67600 1.30577 1.67398 1.17976 1.11659 1.30487 1.21947 0.92129 0.94425 0.82627 1.20605 0.98377 0.92607 0.99740 1.22997 1.01925 0.99070 0.95457 1.22954 0.90269 1.03113 1.03095 1.69062 1.11369 1.10576 1.29110 0.89654 0.94898 0.95023 0.92103 0.89941 0.91596 0.82660 0.74036 0.85083 0.87458 0.88441 0.88039 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.93 37.15 0.33 -2.52 16 2 C 0.13 2.94 4.86 -4.05 -0.02 2.92 16 3 N -0.39 -10.00 2.63 -115.76 -0.30 -10.30 16 4 C -0.29 -7.87 9.39 -15.03 -0.14 -8.01 16 5 H 0.11 3.04 7.31 -52.48 -0.38 2.65 16 6 C 0.03 0.78 5.03 -17.44 -0.09 0.69 16 7 N -0.84 -20.46 8.13 55.51 0.45 -20.01 16 8 Si 0.93 19.28 29.58 -169.99 -5.03 14.25 16 9 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 10 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 C 0.45 11.62 7.57 -12.15 -0.09 11.53 16 13 O -0.59 -16.74 16.07 5.33 0.09 -16.65 16 14 C 0.18 3.82 6.48 -82.70 -0.54 3.29 16 15 C -0.21 -3.99 9.68 -38.70 -0.37 -4.36 16 16 C 0.35 5.88 7.84 -16.70 -0.13 5.75 16 17 O -0.48 -6.49 13.58 -18.26 -0.25 -6.74 16 18 N -0.55 -9.39 9.35 -10.80 -0.10 -9.49 16 19 C 0.36 6.23 7.31 -157.35 -1.15 5.08 16 20 C -0.09 -1.30 6.23 -91.78 -0.57 -1.87 16 21 C -0.16 -1.77 10.01 -26.70 -0.27 -2.04 16 22 C -0.16 -1.86 10.24 -26.70 -0.27 -2.13 16 23 N -0.48 -9.62 4.01 -7.39 -0.03 -9.65 16 24 H 0.08 2.09 5.90 -51.93 -0.31 1.78 16 25 H 0.03 0.73 6.13 -51.93 -0.32 0.41 16 26 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 1.32 5.74 -51.93 -0.30 1.02 16 28 H 0.08 1.98 6.15 -51.93 -0.32 1.66 16 29 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 30 H 0.16 2.88 7.75 -52.48 -0.41 2.48 16 31 H 0.40 3.20 9.06 45.56 0.41 3.62 16 32 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 33 H 0.11 1.31 7.54 -51.93 -0.39 0.92 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -30.37 302.82 -7.18 -37.55 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.26 Total: 8.17 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -3.31 Total: 8.31 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.02 Total: -49.45 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.16 Total: -23.39 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.37 -7.18 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261547797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.712 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds