Wall clock time and date at job start Mon Mar 30 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47271 * 2 1 4 4 C 1.36704 * 120.00141 * 96.31045 * 3 2 1 5 5 H 1.08003 * 120.00021 * 163.31075 * 4 3 2 6 6 C 1.39173 * 119.99640 * 343.31582 * 4 3 2 7 7 N 1.31276 * 119.99939 * 344.13860 * 6 4 3 8 8 Si 1.86800 * 119.99529 * 164.14249 * 6 4 3 9 9 H 1.48494 * 109.47434 * 89.99901 * 8 6 4 10 10 H 1.48501 * 109.46688 * 209.99732 * 8 6 4 11 11 H 1.48497 * 109.47331 * 329.99420 * 8 6 4 12 12 C 1.34775 * 119.99917 * 276.31797 * 3 2 1 13 13 O 1.21539 * 119.99755 * 183.57359 * 12 3 2 14 14 C 1.48239 * 120.00010 * 3.57011 * 12 3 2 15 15 C 1.39331 * 120.52704 * 187.23085 * 14 12 3 16 16 C 1.39514 * 118.19744 * 179.97438 * 15 14 12 17 17 O 1.35523 * 120.47869 * 180.02562 * 16 15 14 18 18 N 1.32708 * 119.03232 * 0.28602 * 16 15 14 19 19 C 1.31869 * 120.96011 * 359.42694 * 18 16 15 20 20 C 1.50700 * 118.99665 * 180.29761 * 19 18 16 21 21 C 1.52996 * 117.50344 * 9.02599 * 20 19 18 22 22 C 1.52996 * 117.50026 * 300.36369 * 20 19 18 23 23 N 1.31542 * 121.99702 * 0.58429 * 19 18 16 24 24 H 1.08999 * 109.47104 * 299.99867 * 1 2 3 25 25 H 1.08997 * 109.47265 * 60.00109 * 1 2 3 26 26 H 1.09008 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47104 * 240.00132 * 2 1 3 28 28 H 1.08997 * 109.47265 * 119.99891 * 2 1 3 29 29 H 0.97003 * 119.99398 * 180.02562 * 7 6 4 30 30 H 1.08005 * 120.89583 * 0.02562 * 15 14 12 31 31 H 0.96701 * 113.99571 * 90.00728 * 17 16 15 32 32 H 1.09004 * 115.54716 * 154.69863 * 20 19 18 33 33 H 1.08998 * 117.49903 * 0.02562 * 21 20 19 34 34 H 1.08996 * 117.49865 * 145.01747 * 21 20 19 35 35 H 1.09005 * 117.49995 * 214.98417 * 22 20 19 36 36 H 1.09000 * 117.50069 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3689 1.9823 1.1767 5 1 2.9713 2.8786 1.1667 6 6 1.9495 1.4390 2.3875 7 7 0.9799 0.5543 2.4091 8 14 2.7664 1.9690 3.9816 9 1 2.0454 3.1401 4.5418 10 1 2.7236 0.8490 4.9558 11 1 4.1795 2.3390 3.7146 12 6 2.1218 2.0593 -1.1601 13 8 2.5878 3.1818 -1.1683 14 6 1.6675 1.4361 -2.4261 15 6 1.9050 2.0618 -3.6481 16 6 1.4567 1.4319 -4.8094 17 8 1.6634 1.9992 -6.0227 18 7 0.8205 0.2717 -4.7081 19 6 0.6197 -0.2916 -3.5328 20 6 -0.1021 -1.6131 -3.4698 21 6 -0.3771 -2.3317 -4.7922 22 6 -1.5254 -1.6679 -4.0282 23 7 1.0255 0.2675 -2.4135 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.6875 0.1759 3.2531 30 1 2.4228 3.0085 -3.6950 31 1 2.4949 1.7387 -6.4421 32 1 0.1210 -2.2295 -2.5989 33 1 -0.0356 -1.8489 -5.7078 34 1 -0.3352 -3.4208 -4.7913 35 1 -2.2387 -2.3207 -3.5250 36 1 -1.9400 -0.7481 -4.4408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261547797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:23 Heat of formation + Delta-G solvation = 17.162212 kcal Electronic energy + Delta-G solvation = -21901.951030 eV Core-core repulsion = 18581.536554 eV Total energy + Delta-G solvation = -3320.414476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44752 -40.32829 -38.91862 -37.60107 -37.17749 -34.54954 -33.50706 -32.32440 -31.17301 -27.84856 -26.12762 -25.52622 -23.99424 -23.17225 -22.93657 -20.98407 -19.82165 -19.36790 -18.70603 -17.45975 -17.22003 -16.70370 -16.62516 -16.45234 -15.92145 -15.66127 -15.36716 -14.89702 -14.64661 -14.49126 -13.76441 -13.27268 -13.14589 -13.08326 -12.86557 -12.69790 -12.32726 -12.17269 -12.09944 -11.90131 -11.77044 -11.58535 -11.35876 -11.25957 -10.89501 -10.82768 -10.29218 -10.09928 -9.69592 -8.37988 -5.99743 -0.54958 -0.22619 1.37238 1.43316 1.55844 1.84115 2.14441 2.25997 2.56561 2.61402 2.86289 3.04467 3.19013 3.47118 3.82740 3.86282 3.96696 4.16034 4.17253 4.35721 4.60364 4.72541 4.84148 4.97560 5.00113 5.11563 5.15787 5.22571 5.31919 5.35161 5.38042 5.56726 5.78448 5.96501 6.01501 6.42396 6.48935 6.93210 7.04501 7.28225 7.88423 8.50900 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.005847 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.779440 B = 4787.626606 C = 5864.948322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.137 3.863 3 N -0.399 5.399 4 C -0.346 4.346 5 H 0.082 0.918 6 C 0.007 3.993 7 N -0.848 5.848 8 Si 0.998 3.002 9 H -0.273 1.273 10 H -0.261 1.261 11 H -0.271 1.271 12 C 0.438 3.562 13 O -0.634 6.634 14 C 0.159 3.841 15 C -0.216 4.216 16 C 0.372 3.628 17 O -0.472 6.472 18 N -0.540 5.540 19 C 0.355 3.645 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.148 4.148 23 N -0.495 5.495 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.281 0.719 30 H 0.154 0.846 31 H 0.430 0.570 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 -8.955 -10.465 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.015 3.985 3 N -0.112 5.112 4 C -0.475 4.475 5 H 0.100 0.900 6 C -0.199 4.199 7 N -0.484 5.484 8 Si 0.820 3.180 9 H -0.198 1.198 10 H -0.185 1.185 11 H -0.196 1.196 12 C 0.228 3.772 13 O -0.524 6.524 14 C 0.015 3.985 15 C -0.242 4.242 16 C 0.183 3.817 17 O -0.282 6.282 18 N -0.266 5.266 19 C 0.089 3.911 20 C -0.140 4.140 21 C -0.171 4.171 22 C -0.186 4.186 23 N -0.214 5.214 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.293 0.707 32 H 0.157 0.843 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.018 -9.099 -10.177 13.981 hybrid contribution 1.257 1.404 0.609 1.980 sum -1.761 -7.695 -9.568 12.404 Atomic orbital electron populations 1.21800 0.94945 1.00538 0.99760 1.21644 0.96185 0.80574 1.00144 1.44087 1.49625 1.12517 1.04994 1.19907 1.32071 1.12040 0.83498 0.89980 1.26251 0.95222 0.96247 1.02190 1.70153 1.22378 1.27091 1.28779 0.84887 0.78538 0.78398 0.76205 1.19849 1.18522 1.19589 1.17880 0.89227 0.86157 0.83894 1.90546 1.54364 1.21089 1.86396 1.21640 0.92258 0.90450 0.94197 1.22849 1.04905 1.04311 0.92098 1.19180 0.89646 0.86950 0.85923 1.84676 1.47403 1.67369 1.28786 1.67604 1.17535 1.11374 1.30116 1.22682 0.91181 0.95326 0.81928 1.20805 0.99878 0.91390 1.01947 1.23094 1.00074 1.00522 0.93390 1.23057 0.89785 1.03110 1.02670 1.68954 1.11792 1.10025 1.30621 0.92235 0.95567 0.92423 0.90898 0.91276 0.90790 0.82788 0.70683 0.84347 0.88229 0.85429 0.85578 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.94 8.93 71.98 0.64 -4.29 16 2 C 0.14 6.38 4.86 86.38 0.42 6.80 16 3 N -0.40 -21.53 2.63 -638.44 -1.68 -23.20 16 4 C -0.35 -19.51 9.39 84.16 0.79 -18.72 16 5 H 0.08 4.92 7.31 -2.91 -0.02 4.90 16 6 C 0.01 0.36 5.03 85.00 0.43 0.79 16 7 N -0.85 -41.71 8.13 21.70 0.18 -41.53 16 8 Si 1.00 40.07 29.58 68.60 2.03 42.10 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 11 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 12 C 0.44 23.59 7.57 86.90 0.66 24.25 16 13 O -0.63 -37.82 16.07 -3.84 -0.06 -37.88 16 14 C 0.16 7.06 6.48 41.84 0.27 7.33 16 15 C -0.22 -8.24 9.68 22.84 0.22 -8.02 16 16 C 0.37 11.84 7.84 84.87 0.67 12.50 16 17 O -0.47 -11.44 13.58 -88.26 -1.20 -12.64 16 18 N -0.54 -17.26 9.35 -300.81 -2.81 -20.07 16 19 C 0.36 11.84 7.31 138.80 1.01 12.85 16 20 C -0.12 -3.02 6.23 -11.54 -0.07 -3.10 16 21 C -0.13 -2.49 10.01 30.62 0.31 -2.18 16 22 C -0.15 -3.04 10.24 30.62 0.31 -2.72 16 23 N -0.49 -19.57 4.01 -177.30 -0.71 -20.28 16 24 H 0.06 2.94 5.90 -2.39 -0.01 2.93 16 25 H 0.03 1.16 6.13 -2.39 -0.01 1.14 16 26 H 0.06 2.16 8.14 -2.38 -0.02 2.15 16 27 H 0.07 3.20 5.74 -2.39 -0.01 3.18 16 28 H 0.07 3.38 6.15 -2.39 -0.01 3.36 16 29 H 0.28 12.70 8.31 -92.71 -0.77 11.93 16 30 H 0.15 5.83 7.75 -2.91 -0.02 5.80 16 31 H 0.43 5.34 9.06 -74.06 -0.67 4.66 16 32 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.10 2.06 7.54 -2.39 -0.02 2.05 16 34 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.49 302.82 1.87 -66.63 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.46 Total: 21.38 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 5.66 Total: 25.50 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -5.02 Total: -105.09 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -1.26 Total: -50.52 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -68.49 1.87 -66.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261547797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.790 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds