Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47209 * 2 1 4 4 N 1.28386 * 119.09828 * 269.99978 * 3 2 1 5 5 C 1.31482 * 122.25232 * 179.71870 * 4 3 2 6 6 C 1.47747 * 119.89633 * 180.02562 * 5 4 3 7 7 O 1.21603 * 119.99743 * 173.36908 * 6 5 4 8 8 N 1.34778 * 120.00281 * 353.37414 * 6 5 4 9 9 C 1.36841 * 120.00057 * 184.68977 * 8 6 5 10 10 H 1.07988 * 120.00109 * 224.83968 * 9 8 6 11 11 C 1.39070 * 119.99548 * 44.84400 * 9 8 6 12 12 N 1.31348 * 120.00013 * 7.74723 * 11 9 8 13 13 Si 1.86795 * 119.99578 * 187.75521 * 11 9 8 14 14 H 1.48502 * 109.47397 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47294 * 119.99961 * 13 11 9 16 16 H 1.48507 * 109.47208 * 239.99831 * 13 11 9 17 17 C 1.46503 * 119.99843 * 4.68804 * 8 6 5 18 18 C 1.52993 * 117.49688 * 181.52282 * 17 8 6 19 19 C 1.52998 * 60.00435 * 252.51396 * 18 17 8 20 20 C 1.41629 * 120.20280 * 0.02562 * 5 4 3 21 21 C 1.36298 * 118.23247 * 359.97438 * 20 5 4 22 22 C 1.34609 * 119.09757 * 89.73128 * 3 2 1 23 23 O 1.21979 * 120.21861 * 0.30336 * 22 3 2 24 24 H 1.08996 * 109.47307 * 60.00212 * 1 2 3 25 25 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47233 * 299.99774 * 1 2 3 27 27 H 1.09004 * 109.47156 * 239.99502 * 2 1 3 28 28 H 1.09004 * 109.47181 * 120.00420 * 2 1 3 29 29 H 0.97003 * 119.99881 * 184.99611 * 12 11 9 30 30 H 1.08999 * 115.54938 * 327.23461 * 17 8 6 31 31 H 1.09008 * 117.50243 * 0.02562 * 18 17 8 32 32 H 1.08998 * 117.50045 * 145.02635 * 18 17 8 33 33 H 1.08999 * 117.49935 * 252.51467 * 19 18 17 34 34 H 1.09000 * 117.52213 * 107.47655 * 19 18 17 35 35 H 1.07996 * 120.88265 * 180.02562 * 20 5 4 36 36 H 1.08006 * 121.02490 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2265 1.9698 -1.1218 5 6 2.6589 3.2093 -1.1942 6 6 2.8803 3.8362 -2.5136 7 8 3.1634 5.0166 -2.5861 8 7 2.7684 3.0999 -3.6369 9 6 3.0667 3.6551 -4.8515 10 1 2.4107 3.4949 -5.6942 11 6 4.2149 4.4255 -5.0007 12 7 5.0899 4.4961 -4.0236 13 14 4.5125 5.3600 -6.5904 14 1 3.3857 5.1160 -7.5265 15 1 4.6093 6.8131 -6.2998 16 1 5.7793 4.8935 -7.2092 17 6 2.3275 1.7051 -3.5575 18 6 2.2548 0.9117 -4.8637 19 6 0.9677 1.3583 -4.1674 20 6 2.9132 3.9454 -0.0112 21 6 2.6970 3.3341 1.1876 22 6 2.2313 2.0002 1.1762 23 8 2.0245 1.4131 2.2252 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8536 5.0895 -4.0985 30 1 2.6274 1.1677 -2.6578 31 1 2.5356 1.4274 -5.7821 32 1 2.5071 -0.1479 -4.8236 33 1 0.3733 0.5924 -3.6691 34 1 0.4012 2.1680 -4.6272 35 1 3.2683 4.9643 -0.0578 36 1 2.8757 3.8534 2.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318382485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = 55.202541 kcal Electronic energy + Delta-G solvation = -22240.382242 eV Core-core repulsion = 18921.617319 eV Total energy + Delta-G solvation = -3318.764923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71188 -38.73578 -37.20970 -36.23971 -34.93938 -32.95299 -31.84974 -31.08340 -30.04482 -25.87116 -25.07161 -24.12670 -22.41069 -21.73075 -21.29557 -20.08921 -18.25249 -17.42130 -16.47342 -16.32235 -16.03403 -15.64854 -14.82640 -14.55188 -14.08236 -13.90976 -13.68046 -13.35709 -13.17614 -13.02437 -12.62098 -12.32675 -12.02837 -11.97314 -11.43780 -11.25337 -11.05352 -10.94039 -10.79988 -10.72143 -10.23563 -10.06810 -9.94677 -9.80184 -9.08058 -8.88471 -8.32455 -8.15132 -7.16921 -6.21340 -4.04538 0.83067 1.73059 2.49492 3.22974 3.30173 3.32881 3.52131 4.08384 4.31451 4.44552 4.64875 4.83832 5.00783 5.04034 5.11675 5.16989 5.22163 5.24701 5.43149 5.56295 5.74540 5.79317 5.82397 5.94810 6.00788 6.08167 6.11472 6.25337 6.28878 6.37789 6.54008 6.86665 7.00868 7.47358 7.86404 8.10968 8.43862 8.88085 8.99122 9.45038 10.10389 10.82067 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.006496 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.326858 B = 4309.479401 C = 5239.810711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.349 5.349 4 N -0.202 5.202 5 C 0.053 3.947 6 C 0.531 3.469 7 O -0.520 6.520 8 N -0.401 5.401 9 C -0.328 4.328 10 H 0.085 0.915 11 C 0.059 3.941 12 N -0.823 5.823 13 Si 0.917 3.083 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.283 1.283 17 C 0.071 3.929 18 C -0.183 4.183 19 C -0.200 4.200 20 C -0.020 4.020 21 C -0.212 4.212 22 C 0.478 3.522 23 O -0.553 6.553 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.268 0.732 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 -7.302 4.268 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.169 5.169 4 N -0.031 5.031 5 C -0.117 4.117 6 C 0.316 3.684 7 O -0.396 6.396 8 N -0.120 5.120 9 C -0.456 4.456 10 H 0.103 0.897 11 C -0.152 4.152 12 N -0.457 5.457 13 Si 0.744 3.256 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.209 1.209 17 C -0.035 4.035 18 C -0.221 4.221 19 C -0.239 4.239 20 C -0.044 4.044 21 C -0.241 4.241 22 C 0.278 3.722 23 O -0.434 6.434 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.176 0.824 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.610 -7.726 4.385 10.506 hybrid contribution 0.489 1.013 -0.131 1.133 sum -5.121 -6.713 4.255 9.454 Atomic orbital electron populations 1.22099 0.94092 1.03069 1.03149 1.21884 0.95772 0.78488 1.04875 1.46993 1.52061 1.14721 1.03143 1.71881 1.10737 1.10981 1.09467 1.22836 1.01747 0.89117 0.98048 1.16830 0.84479 0.85993 0.81052 1.90649 1.49792 1.14715 1.84458 1.42612 1.57354 1.06291 1.05714 1.19107 1.05811 1.33202 0.87477 0.89694 1.25368 0.94104 0.97897 0.97834 1.69820 1.10643 1.33192 1.32006 0.86047 0.78120 0.79692 0.81744 1.19394 1.20526 1.20906 1.22636 0.97412 0.86377 0.97056 1.23140 1.01271 0.99038 0.98633 1.23197 0.91768 1.03170 1.05745 1.22356 0.89816 1.01578 0.90642 1.22588 1.06781 0.94650 1.00092 1.18043 0.81076 0.88978 0.84136 1.90890 1.54973 1.67586 1.29934 0.91453 0.90532 0.92040 0.88372 0.88119 0.92173 0.84408 0.87762 0.89841 0.89916 0.89421 0.82405 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.23 37.16 0.38 -1.43 16 2 C 0.11 1.37 6.27 -4.04 -0.03 1.34 16 3 N -0.35 -5.66 3.22 -63.33 -0.20 -5.86 16 4 N -0.20 -3.64 6.54 33.41 0.22 -3.42 16 5 C 0.05 1.08 6.76 -82.84 -0.56 0.52 16 6 C 0.53 13.12 6.76 -12.37 -0.08 13.03 16 7 O -0.52 -14.50 14.09 5.28 0.07 -14.42 16 8 N -0.40 -9.71 2.85 -108.83 -0.31 -10.02 16 9 C -0.33 -8.49 7.97 -15.01 -0.12 -8.61 16 10 H 0.09 2.12 7.15 -52.49 -0.38 1.74 16 11 C 0.06 1.57 4.72 -17.45 -0.08 1.49 16 12 N -0.82 -23.11 11.18 55.50 0.62 -22.49 16 13 Si 0.92 20.56 29.56 -169.99 -5.03 15.54 16 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 C 0.07 1.41 5.24 -67.93 -0.36 1.05 16 18 C -0.18 -3.19 9.80 -26.74 -0.26 -3.45 16 19 C -0.20 -3.35 10.38 -26.73 -0.28 -3.63 16 20 C -0.02 -0.35 9.67 -38.99 -0.38 -0.73 16 21 C -0.21 -3.38 10.11 -39.12 -0.40 -3.78 16 22 C 0.48 8.30 7.47 -15.18 -0.11 8.19 16 23 O -0.55 -10.48 16.62 4.94 0.08 -10.40 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.10 1.21 7.36 -51.93 -0.38 0.83 16 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.14 2.61 5.16 -57.13 -0.29 2.31 16 31 H 0.10 1.98 6.69 -51.92 -0.35 1.63 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.16 2.66 7.73 -52.49 -0.41 2.25 16 36 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -31.70 308.20 -6.49 -38.19 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.32 Total: 4.25 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.27 Total: 4.00 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.33 Total: -41.80 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.16 Total: -24.83 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.70 -6.49 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318382485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.396 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds