Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47209 * 2 1 4 4 N 1.28386 * 119.09828 * 269.99978 * 3 2 1 5 5 C 1.31482 * 122.25232 * 179.71870 * 4 3 2 6 6 C 1.47747 * 119.89633 * 180.02562 * 5 4 3 7 7 O 1.21603 * 119.99743 * 173.36908 * 6 5 4 8 8 N 1.34778 * 120.00281 * 353.37414 * 6 5 4 9 9 C 1.36841 * 120.00057 * 184.68977 * 8 6 5 10 10 H 1.07988 * 120.00109 * 224.83968 * 9 8 6 11 11 C 1.39070 * 119.99548 * 44.84400 * 9 8 6 12 12 N 1.31348 * 120.00013 * 7.74723 * 11 9 8 13 13 Si 1.86795 * 119.99578 * 187.75521 * 11 9 8 14 14 H 1.48502 * 109.47397 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47294 * 119.99961 * 13 11 9 16 16 H 1.48507 * 109.47208 * 239.99831 * 13 11 9 17 17 C 1.46503 * 119.99843 * 4.68804 * 8 6 5 18 18 C 1.52993 * 117.49688 * 181.52282 * 17 8 6 19 19 C 1.52998 * 60.00435 * 252.51396 * 18 17 8 20 20 C 1.41629 * 120.20280 * 0.02562 * 5 4 3 21 21 C 1.36298 * 118.23247 * 359.97438 * 20 5 4 22 22 C 1.34609 * 119.09757 * 89.73128 * 3 2 1 23 23 O 1.21979 * 120.21861 * 0.30336 * 22 3 2 24 24 H 1.08996 * 109.47307 * 60.00212 * 1 2 3 25 25 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47233 * 299.99774 * 1 2 3 27 27 H 1.09004 * 109.47156 * 239.99502 * 2 1 3 28 28 H 1.09004 * 109.47181 * 120.00420 * 2 1 3 29 29 H 0.97003 * 119.99881 * 184.99611 * 12 11 9 30 30 H 1.08999 * 115.54938 * 327.23461 * 17 8 6 31 31 H 1.09008 * 117.50243 * 0.02562 * 18 17 8 32 32 H 1.08998 * 117.50045 * 145.02635 * 18 17 8 33 33 H 1.08999 * 117.49935 * 252.51467 * 19 18 17 34 34 H 1.09000 * 117.52213 * 107.47655 * 19 18 17 35 35 H 1.07996 * 120.88265 * 180.02562 * 20 5 4 36 36 H 1.08006 * 121.02490 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2265 1.9698 -1.1218 5 6 2.6589 3.2093 -1.1942 6 6 2.8803 3.8362 -2.5136 7 8 3.1634 5.0166 -2.5861 8 7 2.7684 3.0999 -3.6369 9 6 3.0667 3.6551 -4.8515 10 1 2.4107 3.4949 -5.6942 11 6 4.2149 4.4255 -5.0007 12 7 5.0899 4.4961 -4.0236 13 14 4.5125 5.3600 -6.5904 14 1 3.3857 5.1160 -7.5265 15 1 4.6093 6.8131 -6.2998 16 1 5.7793 4.8935 -7.2092 17 6 2.3275 1.7051 -3.5575 18 6 2.2548 0.9117 -4.8637 19 6 0.9677 1.3583 -4.1674 20 6 2.9132 3.9454 -0.0112 21 6 2.6970 3.3341 1.1876 22 6 2.2313 2.0002 1.1762 23 8 2.0245 1.4131 2.2252 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8536 5.0895 -4.0985 30 1 2.6274 1.1677 -2.6578 31 1 2.5356 1.4274 -5.7821 32 1 2.5071 -0.1479 -4.8236 33 1 0.3733 0.5924 -3.6691 34 1 0.4012 2.1680 -4.6272 35 1 3.2683 4.9643 -0.0578 36 1 2.8757 3.8534 2.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318382485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = 35.212072 kcal Electronic energy + Delta-G solvation = -22241.249094 eV Core-core repulsion = 18921.617319 eV Total energy + Delta-G solvation = -3319.631775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.11732 -40.43670 -38.69096 -37.85155 -36.27247 -34.79286 -33.30296 -32.62737 -31.46862 -27.54687 -26.54836 -25.53415 -23.66481 -23.18739 -22.81853 -21.72875 -19.81271 -18.83230 -18.02734 -17.87042 -17.50268 -17.12158 -16.58848 -16.09096 -15.59074 -15.29998 -15.12504 -14.91267 -14.55233 -14.29025 -14.16311 -13.75389 -13.44352 -13.14160 -13.08004 -12.85463 -12.68102 -12.40352 -12.19603 -12.11867 -11.95722 -11.59685 -11.40241 -11.21247 -10.81918 -10.59549 -10.10011 -9.55532 -9.01815 -8.16450 -6.05022 -0.54477 0.21794 1.20436 1.43334 1.47206 1.56891 2.05882 2.31814 2.71910 2.84377 3.11010 3.15930 3.47762 3.70917 3.78514 3.90402 4.06933 4.09801 4.25507 4.36253 4.41684 4.53511 4.59871 4.65050 4.83226 4.89433 4.93739 4.98805 5.04809 5.16714 5.22192 5.46409 5.47488 5.55134 6.17516 6.47054 6.95141 6.98487 7.15207 7.58627 8.24517 8.86352 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.006496 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.326858 B = 4309.479401 C = 5239.810711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.341 5.341 4 N -0.180 5.180 5 C 0.030 3.970 6 C 0.522 3.478 7 O -0.567 6.567 8 N -0.417 5.417 9 C -0.342 4.342 10 H 0.087 0.913 11 C 0.010 3.990 12 N -0.863 5.863 13 Si 0.978 3.022 14 H -0.256 1.256 15 H -0.290 1.290 16 H -0.276 1.276 17 C 0.041 3.959 18 C -0.175 4.175 19 C -0.176 4.176 20 C -0.029 4.029 21 C -0.193 4.193 22 C 0.470 3.530 23 O -0.566 6.566 24 H 0.062 0.938 25 H 0.110 0.890 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.263 0.737 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 -9.462 4.567 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.161 5.161 4 N -0.010 5.010 5 C -0.140 4.140 6 C 0.309 3.691 7 O -0.446 6.446 8 N -0.136 5.136 9 C -0.470 4.470 10 H 0.105 0.895 11 C -0.197 4.197 12 N -0.499 5.499 13 Si 0.802 3.198 14 H -0.179 1.179 15 H -0.216 1.216 16 H -0.201 1.201 17 C -0.064 4.064 18 C -0.213 4.213 19 C -0.214 4.214 20 C -0.053 4.053 21 C -0.223 4.223 22 C 0.270 3.730 23 O -0.449 6.449 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.164 0.836 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.177 0.823 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.848 -9.933 4.650 12.930 hybrid contribution 0.742 1.514 -0.108 1.690 sum -6.106 -8.419 4.542 11.349 Atomic orbital electron populations 1.22079 0.92577 1.04968 1.02092 1.22346 0.97000 0.76385 1.06383 1.47377 1.50536 1.15827 1.02401 1.71796 1.09046 1.10005 1.10142 1.22271 1.04346 0.90487 0.96916 1.17379 0.83302 0.85816 0.82589 1.90594 1.51578 1.16709 1.85693 1.42824 1.57412 1.08134 1.05184 1.19328 1.05677 1.33695 0.88305 0.89509 1.26200 0.94051 0.98829 1.00601 1.69937 1.11347 1.34467 1.34139 0.85128 0.78547 0.77574 0.78545 1.17934 1.21631 1.20128 1.22822 1.00215 0.84557 0.98842 1.23205 1.01324 1.00253 0.96473 1.23216 0.90862 1.03107 1.04243 1.22280 0.90938 1.01740 0.90349 1.22855 1.04830 0.94072 1.00513 1.18270 0.81068 0.89413 0.84205 1.90892 1.55619 1.68012 1.30342 0.91939 0.87188 0.93583 0.86120 0.87414 0.92774 0.83560 0.89775 0.86507 0.86207 0.90958 0.82316 0.79381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.23 71.98 0.74 -2.18 16 2 C 0.10 2.09 6.27 86.38 0.54 2.63 16 3 N -0.34 -10.27 3.22 -472.46 -1.52 -11.79 16 4 N -0.18 -6.22 6.54 -48.23 -0.32 -6.54 16 5 C 0.03 1.20 6.76 42.55 0.29 1.49 16 6 C 0.52 26.51 6.76 86.76 0.59 27.10 16 7 O -0.57 -32.97 14.09 -4.04 -0.06 -33.03 16 8 N -0.42 -20.50 2.85 -616.48 -1.75 -22.26 16 9 C -0.34 -18.07 7.97 84.11 0.67 -17.40 16 10 H 0.09 4.40 7.15 -2.92 -0.02 4.37 16 11 C 0.01 0.53 4.72 84.96 0.40 0.93 16 12 N -0.86 -50.36 11.18 21.68 0.24 -50.12 16 13 Si 0.98 43.22 29.56 68.60 2.03 45.24 16 14 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 15 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 17 C 0.04 1.55 5.24 44.99 0.24 1.79 16 18 C -0.17 -5.72 9.80 30.59 0.30 -5.42 16 19 C -0.18 -5.45 10.38 30.60 0.32 -5.13 16 20 C -0.03 -1.03 9.67 22.65 0.22 -0.81 16 21 C -0.19 -5.86 10.11 22.57 0.23 -5.63 16 22 C 0.47 15.34 7.47 85.02 0.63 15.98 16 23 O -0.57 -20.15 16.62 -5.25 -0.09 -20.24 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.11 2.24 7.36 -2.38 -0.02 2.22 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.15 5.25 5.16 -9.11 -0.05 5.20 16 31 H 0.08 3.12 6.69 -2.38 -0.02 3.10 16 32 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.16 5.49 7.73 -2.91 -0.02 5.46 16 36 H 0.19 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -70.85 308.20 4.76 -66.09 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.07 Total: 19.29 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 5.16 Total: 13.36 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -3.35 Total: -90.71 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.14 Total: -53.27 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.85 4.76 -66.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318382485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.302 kcal (2) G-P(sol) polarization free energy of solvation -70.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds