Wall clock time and date at job start Mon Mar 30 2020 02:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99897 * 2 1 4 4 O 1.21510 * 119.99844 * 359.97438 * 3 2 1 5 5 C 1.48231 * 119.99938 * 179.97438 * 3 2 1 6 6 C 1.39631 * 119.64988 * 179.72066 * 5 3 2 7 7 C 1.38547 * 119.24088 * 179.77024 * 6 5 3 8 8 C 1.38579 * 118.55455 * 0.49749 * 7 6 5 9 9 C 1.39593 * 119.24911 * 359.74553 * 8 7 6 10 10 C 1.48219 * 119.65686 * 180.02562 * 9 8 7 11 11 O 1.21514 * 120.00057 * 352.78925 * 10 9 8 12 12 N 1.34780 * 120.00315 * 172.78177 * 10 9 8 13 13 C 1.46501 * 119.99750 * 2.08868 * 12 10 9 14 14 C 1.46497 * 120.00125 * 182.08219 * 12 10 9 15 15 C 1.50699 * 109.47000 * 90.00540 * 14 12 10 16 16 H 1.08005 * 119.99784 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99851 * 179.97438 * 15 14 12 18 18 N 1.31514 * 120.00314 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99735 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47192 * 90.00349 * 19 17 15 21 21 H 1.48506 * 109.47099 * 209.99888 * 19 17 15 22 22 H 1.48498 * 109.47531 * 329.99834 * 19 17 15 23 23 N 1.32338 * 119.65419 * 359.97438 * 5 3 2 24 24 H 1.08995 * 109.47284 * 60.00876 * 1 2 3 25 25 H 1.08995 * 109.46647 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47008 * 300.00061 * 1 2 3 27 27 H 0.96997 * 120.00637 * 179.97438 * 2 1 3 28 28 H 1.07990 * 120.37713 * 0.02562 * 6 5 3 29 29 H 1.08001 * 120.72296 * 180.22678 * 7 6 5 30 30 H 1.08005 * 120.38108 * 179.77116 * 8 7 6 31 31 H 1.09001 * 109.47297 * 83.76633 * 13 12 10 32 32 H 1.08997 * 109.46789 * 203.77130 * 13 12 10 33 33 H 1.09005 * 109.46987 * 323.77045 * 13 12 10 34 34 H 1.08999 * 109.47399 * 210.00442 * 14 12 10 35 35 H 1.09000 * 109.47137 * 330.00521 * 14 12 10 36 36 H 0.97006 * 120.00111 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5313 2.2195 -0.0005 5 6 3.6212 1.1672 0.0006 6 6 4.3119 2.3807 -0.0053 7 6 5.6973 2.3709 0.0001 8 6 6.3511 1.1490 0.0007 9 6 5.5989 -0.0270 0.0013 10 6 6.2888 -1.3388 0.0025 11 8 7.4957 -1.3907 -0.1291 12 7 5.5776 -2.4742 0.1497 13 6 4.1181 -2.4148 0.2626 14 6 6.2639 -3.7676 0.1967 15 6 6.6130 -4.0994 1.6247 16 1 6.3502 -3.4150 2.4178 17 6 7.2677 -5.2766 1.9186 18 7 7.5872 -6.1102 0.9528 19 14 7.7011 -5.6876 3.6886 20 1 6.5839 -6.4440 4.3089 21 1 8.9345 -6.5142 3.7171 22 1 7.9295 -4.4314 4.4468 23 7 4.2759 0.0172 0.0016 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.9501 -0.8400 0.0004 28 1 3.7724 3.3162 -0.0099 29 1 6.2557 3.2953 -0.0006 30 1 7.4303 1.1069 0.0012 31 1 3.6782 -2.3693 -0.7337 32 1 3.7572 -3.3043 0.7790 33 1 3.8332 -1.5265 0.8265 34 1 5.6100 -4.5408 -0.2065 35 1 7.1760 -3.7167 -0.3979 36 1 8.0482 -6.9383 1.1596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319689382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:34 Heat of formation + Delta-G solvation = -38.147401 kcal Electronic energy + Delta-G solvation = -21188.144324 eV Core-core repulsion = 17865.331444 eV Total energy + Delta-G solvation = -3322.812880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.06503 -40.64586 -39.53542 -36.80070 -35.77906 -34.81893 -33.69567 -32.78308 -29.80437 -28.18736 -27.59797 -26.08861 -25.15049 -24.12036 -21.87550 -21.02718 -19.17131 -18.71645 -18.41457 -17.28057 -17.12922 -17.04742 -16.72716 -16.43151 -16.18135 -16.03785 -15.26320 -14.80482 -14.69956 -14.42046 -14.20667 -13.75725 -13.71622 -13.48176 -13.17122 -13.14040 -13.02811 -12.87573 -12.55208 -12.23177 -11.78275 -11.66012 -11.10837 -11.07539 -10.64400 -10.47030 -10.32242 -10.13349 -9.45947 -8.23127 -6.38217 -0.60725 -0.19454 1.37402 1.40104 1.41290 1.50997 1.94833 2.04082 2.14377 2.39733 2.78241 2.86376 3.06850 3.46095 3.81180 3.82100 3.91652 4.25098 4.39775 4.49583 4.55270 4.65527 4.77094 4.86765 4.94780 4.97606 5.01076 5.10005 5.20574 5.31439 5.41511 5.54930 5.79171 6.02838 6.17324 6.48415 6.63075 6.70268 7.02590 7.18350 7.35536 8.84153 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.004744 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.383736 B = 5901.100487 C = 6682.988324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.712 5.712 3 C 0.573 3.427 4 O -0.559 6.559 5 C 0.052 3.948 6 C -0.086 4.086 7 C -0.063 4.063 8 C -0.093 4.093 9 C 0.071 3.929 10 C 0.546 3.454 11 O -0.581 6.581 12 N -0.585 5.585 13 C 0.079 3.921 14 C 0.256 3.744 15 C -0.545 4.545 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.274 1.274 23 N -0.429 5.429 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.416 0.584 28 H 0.172 0.828 29 H 0.195 0.805 30 H 0.154 0.846 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.030 0.970 35 H 0.005 0.995 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 15.559 -1.620 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.363 5.363 3 C 0.358 3.642 4 O -0.438 6.438 5 C -0.089 4.089 6 C -0.107 4.107 7 C -0.088 4.088 8 C -0.114 4.114 9 C -0.069 4.069 10 C 0.333 3.667 11 O -0.461 6.461 12 N -0.313 5.313 13 C -0.063 4.063 14 C 0.135 3.865 15 C -0.583 4.583 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.793 3.207 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.199 1.199 23 N -0.144 5.144 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.080 0.920 27 H 0.253 0.747 28 H 0.190 0.810 29 H 0.212 0.788 30 H 0.172 0.828 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.023 0.977 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.769 15.234 -1.734 19.953 hybrid contribution 1.192 -0.486 0.640 1.438 sum -11.577 14.748 -1.094 18.781 Atomic orbital electron populations 1.21834 0.77400 1.04692 1.02355 1.45828 1.09097 1.08691 1.72653 1.17897 0.85625 0.84314 0.76322 1.90761 1.69158 1.32044 1.51797 1.21418 0.94437 0.90312 1.02685 1.22581 0.95192 0.99317 0.93612 1.22069 0.93602 0.98840 0.94321 1.22514 1.02945 0.91831 0.94078 1.20997 0.89625 0.93881 1.02413 1.18415 0.86244 0.84180 0.77875 1.90720 1.15270 1.87118 1.53032 1.48051 1.09092 1.06614 1.67567 1.22414 0.77734 1.03700 1.02455 1.18922 0.91986 0.79215 0.96336 1.21641 1.38629 1.04763 0.93300 0.92974 1.25825 0.95005 0.95813 1.02164 1.70045 1.41073 1.11441 1.33991 0.85405 0.78182 0.78111 0.79044 1.18837 1.20485 1.19851 1.67846 1.08757 1.28346 1.09495 0.91971 0.87321 0.92045 0.74684 0.81046 0.78799 0.82826 0.91500 0.91781 0.87699 0.95237 0.97714 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.70 127.77 1.37 2.49 16 2 N -0.71 -13.85 5.70 -487.11 -2.78 -16.63 16 3 C 0.57 13.82 7.81 86.90 0.68 14.50 16 4 O -0.56 -15.65 16.32 -3.75 -0.06 -15.72 16 5 C 0.05 1.25 6.75 42.06 0.28 1.54 16 6 C -0.09 -1.64 9.63 22.68 0.22 -1.42 16 7 C -0.06 -1.07 10.16 22.42 0.23 -0.84 16 8 C -0.09 -2.36 9.63 22.68 0.22 -2.15 16 9 C 0.07 2.30 6.63 42.04 0.28 2.58 16 10 C 0.55 23.86 7.66 86.90 0.67 24.53 16 11 O -0.58 -29.96 15.91 -3.76 -0.06 -30.02 16 12 N -0.58 -25.90 2.86 -854.14 -2.44 -28.34 16 13 C 0.08 2.59 8.65 127.77 1.11 3.69 16 14 C 0.26 13.91 5.15 85.63 0.44 14.35 16 15 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 16 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 17 C 0.01 0.65 5.46 84.65 0.46 1.11 16 18 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 19 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 N -0.43 -11.97 5.27 -174.08 -0.92 -12.88 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 25 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.42 7.64 6.86 -92.71 -0.64 7.00 16 28 H 0.17 2.58 7.64 -2.92 -0.02 2.56 16 29 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.15 3.92 7.66 -2.91 -0.02 3.90 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 2.09 8.02 -2.39 -0.02 2.07 16 33 H 0.11 3.10 4.66 -2.71 -0.01 3.09 16 34 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 35 H 0.00 0.29 7.39 -2.39 -0.02 0.28 16 36 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -76.27 314.88 2.72 -73.55 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.48 Total: 9.43 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 6.19 Total: 29.22 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -5.85 Total: -112.99 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.12 Total: -45.73 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -76.27 2.72 -73.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319689382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.401 kcal (2) G-P(sol) polarization free energy of solvation -76.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds