Wall clock time and date at job start Mon Mar 30 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34396 * 125.74354 * 2 1 4 4 C 1.38284 * 107.36187 * 180.15586 * 3 2 1 5 5 C 1.46972 * 126.43918 * 179.83758 * 4 3 2 6 6 C 1.35041 * 119.99617 * 179.71093 * 5 4 3 7 7 C 1.41830 * 119.99665 * 179.72169 * 6 5 4 8 8 O 1.21743 * 120.00058 * 0.28213 * 7 6 5 9 9 N 1.34777 * 120.00115 * 180.27577 * 7 6 5 10 10 C 1.47066 * 136.05748 * 359.64092 * 9 7 6 11 11 C 1.53749 * 87.89280 * 152.95680 * 10 9 7 12 12 O 1.42901 * 114.39322 * 272.67683 * 11 10 9 13 13 C 1.50696 * 114.26884 * 139.78942 * 11 10 9 14 14 H 1.08003 * 120.00037 * 266.47846 * 13 11 10 15 15 C 1.37876 * 120.00062 * 86.47473 * 13 11 10 16 16 N 1.31515 * 119.99822 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99932 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46720 * 60.00455 * 17 15 13 19 19 H 1.48507 * 109.46848 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47215 * 299.99949 * 17 15 13 21 21 C 1.47062 * 136.06017 * 180.02562 * 9 7 6 22 22 C 1.41432 * 107.11728 * 359.57657 * 4 3 2 23 23 N 1.30443 * 108.04070 * 0.25852 * 22 4 3 24 24 H 1.08997 * 109.47013 * 270.29054 * 1 2 3 25 25 H 1.08999 * 109.47290 * 30.29503 * 1 2 3 26 26 H 1.09005 * 109.47133 * 150.29362 * 1 2 3 27 27 H 1.07997 * 126.31608 * 359.97438 * 3 2 1 28 28 H 1.07992 * 119.99826 * 359.71822 * 5 4 3 29 29 H 1.08002 * 120.00549 * 0.02562 * 6 5 4 30 30 H 1.09004 * 113.46703 * 267.69004 * 10 9 7 31 31 H 1.09004 * 113.47065 * 38.12400 * 10 9 7 32 32 H 0.96696 * 114.00066 * 273.58220 * 12 11 10 33 33 H 0.97003 * 119.99596 * 179.97438 * 16 15 13 34 34 H 1.09005 * 113.46707 * 321.87328 * 21 9 7 35 35 H 1.09000 * 113.46721 * 92.24759 * 21 9 7 36 36 H 1.08000 * 125.97674 * 180.28636 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.0908 0.0000 4 6 3.5624 0.6547 -0.0036 5 6 4.7637 1.5015 -0.0082 6 6 5.9893 0.9346 -0.0055 7 6 7.1486 1.7516 -0.0160 8 8 7.0387 2.9641 -0.0222 9 7 8.3718 1.1859 -0.0189 10 6 8.9046 -0.1849 -0.0073 11 6 10.1542 0.3555 -0.7217 12 8 10.0503 0.3916 -2.1465 13 6 11.4512 -0.2367 -0.2338 14 1 12.0154 0.2623 0.5402 15 6 11.9176 -1.4157 -0.7755 16 7 11.2309 -2.0232 -1.7183 17 14 13.5258 -2.1494 -0.1712 18 1 13.4229 -2.4382 1.2818 19 1 13.8032 -3.4085 -0.9082 20 1 14.6297 -1.1847 -0.4074 21 6 9.7613 1.6675 -0.0281 22 6 3.5312 -0.7592 0.0042 23 7 2.2823 -1.1357 0.0063 24 1 -0.3633 0.0052 1.0276 25 1 -0.3634 0.8873 -0.5184 26 1 -0.3634 -0.8926 -0.5093 27 1 1.9175 2.1183 -0.0004 28 1 4.6661 2.5770 -0.0137 29 1 6.0868 -0.1410 -0.0003 30 1 9.1070 -0.5635 0.9946 31 1 8.3240 -0.8814 -0.6123 32 1 10.2985 -0.4364 -2.5800 33 1 11.5592 -2.8525 -2.0997 34 1 9.9108 2.5496 -0.6509 35 1 10.1891 1.7779 0.9683 36 1 4.3910 -1.4128 0.0082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321086775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:51 Heat of formation + Delta-G solvation = 54.494712 kcal Electronic energy + Delta-G solvation = -20438.449093 eV Core-core repulsion = 17119.653476 eV Total energy + Delta-G solvation = -3318.795617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27642 -39.54006 -37.49074 -34.35660 -33.92763 -32.58102 -32.14749 -30.01676 -28.62864 -26.85241 -25.39462 -25.00968 -22.95569 -21.33080 -20.45649 -19.33171 -17.94293 -17.37993 -17.06515 -16.23900 -15.72333 -15.38491 -14.96797 -14.60267 -14.52883 -14.12122 -13.78299 -13.33452 -13.16876 -13.03161 -12.70400 -12.61710 -12.20744 -11.93419 -11.80623 -11.50721 -11.02104 -10.96518 -10.71833 -10.45733 -10.24892 -10.21138 -9.70395 -9.59436 -9.15241 -8.73404 -8.33098 -8.01745 -7.63497 -6.36463 -4.46723 1.07431 1.87753 2.23821 2.98122 3.18647 3.24438 3.26765 3.77007 4.07290 4.20982 4.24875 4.55779 4.76475 4.82251 4.87137 5.03022 5.14062 5.25929 5.41829 5.56898 5.63966 5.83000 6.01640 6.24205 6.39088 6.44292 6.50490 6.57973 6.60432 6.74486 6.76763 6.91295 7.17553 7.47304 7.66675 7.85428 8.55788 8.64270 8.90991 9.24493 9.54522 10.70049 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.003412 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.439409 B = 8204.757139 C = 8861.701742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.371 5.371 3 C 0.078 3.922 4 C -0.222 4.222 5 C 0.013 3.987 6 C -0.209 4.209 7 C 0.570 3.430 8 O -0.578 6.578 9 N -0.630 5.630 10 C 0.072 3.928 11 C 0.240 3.760 12 O -0.571 6.571 13 C -0.533 4.533 14 H 0.072 0.928 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.909 3.091 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.106 3.894 22 C 0.075 3.925 23 N -0.302 5.302 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.182 0.818 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.393 0.607 33 H 0.274 0.726 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.233 1.329 3.530 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.150 5.150 3 C -0.071 4.071 4 C -0.234 4.234 5 C -0.008 4.008 6 C -0.230 4.230 7 C 0.364 3.636 8 O -0.462 6.462 9 N -0.362 5.362 10 C -0.051 4.051 11 C 0.198 3.802 12 O -0.384 6.384 13 C -0.571 4.571 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.736 3.264 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.017 4.017 22 C -0.112 4.112 23 N -0.122 5.122 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.199 0.801 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.250 0.750 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.671 1.448 3.507 19.052 hybrid contribution 1.422 -0.492 0.242 1.524 sum -17.248 0.956 3.749 17.677 Atomic orbital electron populations 1.21912 0.73975 1.04725 1.03565 1.48333 1.06952 1.03993 1.55758 1.23104 0.90621 0.93474 0.99912 1.19515 0.92595 0.93165 1.18076 1.21481 0.89404 0.98645 0.91280 1.21740 0.92557 1.00433 1.08309 1.16569 0.82377 0.87429 0.77245 1.90735 1.86793 1.14771 1.53908 1.49650 1.04674 1.11819 1.70027 1.24248 0.96346 0.83440 1.01114 1.19582 0.90894 0.89492 0.80265 1.86048 1.90678 1.43198 1.18439 1.21408 1.06391 1.07433 1.21894 0.91006 1.25080 0.97644 0.96106 0.94252 1.69261 1.38975 1.18869 1.26791 0.86371 0.82743 0.78308 0.78978 1.19887 1.21018 1.19858 1.23301 0.78519 0.99956 0.99916 1.24227 0.94956 0.94597 0.97397 1.77150 1.02183 1.07797 1.25112 0.90538 0.89282 0.89087 0.80066 0.84998 0.86183 0.90131 0.91745 0.75035 0.91556 0.91621 0.89801 0.79304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.44 59.85 0.68 1.21 16 2 N -0.37 -3.76 3.98 -67.49 -0.27 -4.03 16 3 C 0.08 0.77 11.52 -16.41 -0.19 0.58 16 4 C -0.22 -2.82 6.08 -105.13 -0.64 -3.46 16 5 C 0.01 0.20 9.64 -37.18 -0.36 -0.16 16 6 C -0.21 -3.57 9.19 -39.35 -0.36 -3.93 16 7 C 0.57 12.16 7.82 -14.89 -0.12 12.04 16 8 O -0.58 -13.75 16.88 5.15 0.09 -13.66 16 9 N -0.63 -13.87 3.69 -188.44 -0.69 -14.56 16 10 C 0.07 1.57 7.66 -8.39 -0.06 1.50 16 11 C 0.24 5.84 1.58 -91.12 -0.14 5.70 16 12 O -0.57 -15.01 13.55 -35.23 -0.48 -15.49 16 13 C -0.53 -13.42 8.70 -34.44 -0.30 -13.72 16 14 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 15 C 0.07 1.78 5.40 -17.82 -0.10 1.69 16 16 N -0.90 -22.83 11.01 55.43 0.61 -22.22 16 17 Si 0.91 19.44 29.54 -169.99 -5.02 14.42 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 C 0.11 2.38 8.02 -8.51 -0.07 2.31 16 22 C 0.07 0.97 11.39 -16.93 -0.19 0.77 16 23 N -0.30 -3.94 12.49 30.89 0.39 -3.55 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.13 1.90 7.45 -52.49 -0.39 1.51 16 29 H 0.12 1.87 6.75 -52.49 -0.35 1.52 16 30 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 31 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.39 10.39 6.32 45.56 0.29 10.68 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 36 H 0.19 2.14 7.31 -52.49 -0.38 1.75 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -31.98 319.83 -6.17 -38.15 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -3.76 Total: 11.59 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.85 Total: 4.53 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.03 Total: -44.37 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.39 Total: -29.15 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.98 -6.17 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321086775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.640 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds