Wall clock time and date at job start Mon Mar 30 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34396 * 125.74354 * 2 1 4 4 C 1.38284 * 107.36187 * 180.15586 * 3 2 1 5 5 C 1.46972 * 126.43918 * 179.83758 * 4 3 2 6 6 C 1.35041 * 119.99617 * 179.71093 * 5 4 3 7 7 C 1.41830 * 119.99665 * 179.72169 * 6 5 4 8 8 O 1.21743 * 120.00058 * 0.28213 * 7 6 5 9 9 N 1.34777 * 120.00115 * 180.27577 * 7 6 5 10 10 C 1.47066 * 136.05748 * 359.64092 * 9 7 6 11 11 C 1.53749 * 87.89280 * 152.95680 * 10 9 7 12 12 O 1.42901 * 114.39322 * 272.67683 * 11 10 9 13 13 C 1.50696 * 114.26884 * 139.78942 * 11 10 9 14 14 H 1.08003 * 120.00037 * 266.47846 * 13 11 10 15 15 C 1.37876 * 120.00062 * 86.47473 * 13 11 10 16 16 N 1.31515 * 119.99822 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99932 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46720 * 60.00455 * 17 15 13 19 19 H 1.48507 * 109.46848 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47215 * 299.99949 * 17 15 13 21 21 C 1.47062 * 136.06017 * 180.02562 * 9 7 6 22 22 C 1.41432 * 107.11728 * 359.57657 * 4 3 2 23 23 N 1.30443 * 108.04070 * 0.25852 * 22 4 3 24 24 H 1.08997 * 109.47013 * 270.29054 * 1 2 3 25 25 H 1.08999 * 109.47290 * 30.29503 * 1 2 3 26 26 H 1.09005 * 109.47133 * 150.29362 * 1 2 3 27 27 H 1.07997 * 126.31608 * 359.97438 * 3 2 1 28 28 H 1.07992 * 119.99826 * 359.71822 * 5 4 3 29 29 H 1.08002 * 120.00549 * 0.02562 * 6 5 4 30 30 H 1.09004 * 113.46703 * 267.69004 * 10 9 7 31 31 H 1.09004 * 113.47065 * 38.12400 * 10 9 7 32 32 H 0.96696 * 114.00066 * 273.58220 * 12 11 10 33 33 H 0.97003 * 119.99596 * 179.97438 * 16 15 13 34 34 H 1.09005 * 113.46707 * 321.87328 * 21 9 7 35 35 H 1.09000 * 113.46721 * 92.24759 * 21 9 7 36 36 H 1.08000 * 125.97674 * 180.28636 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.0908 0.0000 4 6 3.5624 0.6547 -0.0036 5 6 4.7637 1.5015 -0.0082 6 6 5.9893 0.9346 -0.0055 7 6 7.1486 1.7516 -0.0160 8 8 7.0387 2.9641 -0.0222 9 7 8.3718 1.1859 -0.0189 10 6 8.9046 -0.1849 -0.0073 11 6 10.1542 0.3555 -0.7217 12 8 10.0503 0.3916 -2.1465 13 6 11.4512 -0.2367 -0.2338 14 1 12.0154 0.2623 0.5402 15 6 11.9176 -1.4157 -0.7755 16 7 11.2309 -2.0232 -1.7183 17 14 13.5258 -2.1494 -0.1712 18 1 13.4229 -2.4382 1.2818 19 1 13.8032 -3.4085 -0.9082 20 1 14.6297 -1.1847 -0.4074 21 6 9.7613 1.6675 -0.0281 22 6 3.5312 -0.7592 0.0042 23 7 2.2823 -1.1357 0.0063 24 1 -0.3633 0.0052 1.0276 25 1 -0.3634 0.8873 -0.5184 26 1 -0.3634 -0.8926 -0.5093 27 1 1.9175 2.1183 -0.0004 28 1 4.6661 2.5770 -0.0137 29 1 6.0868 -0.1410 -0.0003 30 1 9.1070 -0.5635 0.9946 31 1 8.3240 -0.8814 -0.6123 32 1 10.2985 -0.4364 -2.5800 33 1 11.5592 -2.8525 -2.0997 34 1 9.9108 2.5496 -0.6509 35 1 10.1891 1.7779 0.9683 36 1 4.3910 -1.4128 0.0082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321086775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:50 Heat of formation + Delta-G solvation = 31.268628 kcal Electronic energy + Delta-G solvation = -20439.456251 eV Core-core repulsion = 17119.653476 eV Total energy + Delta-G solvation = -3319.802776 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.15335 -41.25494 -39.21072 -35.86391 -35.34670 -34.10073 -33.54002 -31.22609 -30.07900 -27.87099 -26.96970 -26.76089 -24.21970 -22.28542 -21.77793 -20.71522 -19.62139 -19.09607 -18.25344 -17.53358 -17.16276 -16.65157 -16.44616 -16.25370 -15.92341 -15.42220 -15.05748 -14.66478 -14.47123 -14.22009 -13.90645 -13.70590 -13.63906 -13.37744 -13.21645 -13.02802 -12.74623 -12.72334 -12.20529 -12.14306 -11.66085 -11.37618 -11.36578 -10.94754 -10.62485 -10.52988 -10.19803 -9.57732 -8.90199 -8.24788 -6.42152 -0.05269 0.94786 1.50359 1.52011 1.56315 1.59762 1.85583 2.13655 2.43033 2.62877 2.97123 3.44494 3.71155 3.85461 3.95806 4.15011 4.19245 4.24070 4.40744 4.44706 4.52151 4.65119 4.66878 4.71817 4.72823 4.83223 4.92413 4.95277 5.25904 5.42972 5.46917 5.57787 5.74982 5.93868 5.98980 6.58671 6.63518 6.95906 7.24754 7.32497 7.51723 8.81142 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.003412 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.439409 B = 8204.757139 C = 8861.701742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.367 5.367 3 C 0.110 3.890 4 C -0.262 4.262 5 C 0.062 3.938 6 C -0.254 4.254 7 C 0.567 3.433 8 O -0.613 6.613 9 N -0.637 5.637 10 C 0.087 3.913 11 C 0.219 3.781 12 O -0.586 6.586 13 C -0.552 4.552 14 H 0.075 0.925 15 C 0.031 3.969 16 N -0.918 5.918 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.106 3.894 22 C 0.068 3.932 23 N -0.334 5.334 24 H 0.092 0.908 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.227 0.773 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.389 0.611 33 H 0.277 0.723 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.218 1.359 4.312 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.145 5.145 3 C -0.041 4.041 4 C -0.274 4.274 5 C 0.040 3.960 6 C -0.276 4.276 7 C 0.364 3.636 8 O -0.500 6.500 9 N -0.368 5.368 10 C -0.036 4.036 11 C 0.177 3.823 12 O -0.399 6.399 13 C -0.590 4.590 14 H 0.093 0.907 15 C -0.170 4.170 16 N -0.559 5.559 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.017 4.017 22 C -0.118 4.118 23 N -0.155 5.155 24 H 0.111 0.889 25 H 0.141 0.859 26 H 0.110 0.890 27 H 0.243 0.757 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.692 1.451 4.297 21.183 hybrid contribution 1.758 -0.446 -0.024 1.814 sum -18.934 1.005 4.273 19.436 Atomic orbital electron populations 1.22369 0.71063 1.06528 1.05227 1.48807 1.08602 1.03318 1.53742 1.23767 0.89453 0.95144 0.95762 1.19508 0.93132 0.92980 1.21748 1.21600 0.89318 0.98929 0.86127 1.21491 0.91802 1.00382 1.13881 1.17192 0.82940 0.87443 0.76069 1.90695 1.87184 1.16177 1.55916 1.49688 1.04770 1.11623 1.70764 1.24026 0.94934 0.83348 1.01259 1.19869 0.91963 0.91001 0.79441 1.86031 1.90840 1.43119 1.19926 1.21639 1.07049 1.07964 1.22381 0.90679 1.25799 1.00478 0.96348 0.94327 1.69331 1.40124 1.19080 1.27342 0.85386 0.78864 0.77340 0.78703 1.19125 1.20803 1.19947 1.23306 0.79436 0.98588 1.00410 1.24395 0.95313 0.95079 0.97039 1.77117 1.02479 1.09566 1.26294 0.88918 0.85906 0.88961 0.75676 0.84666 0.85381 0.88900 0.92012 0.75531 0.91356 0.93010 0.87961 0.79094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.44 127.77 1.46 2.04 16 2 N -0.37 -6.25 3.98 -367.45 -1.46 -7.71 16 3 C 0.11 1.77 11.52 84.31 0.97 2.74 16 4 C -0.26 -6.15 6.08 -20.19 -0.12 -6.27 16 5 C 0.06 1.74 9.64 23.82 0.23 1.97 16 6 C -0.25 -8.74 9.19 22.42 0.21 -8.53 16 7 C 0.57 24.60 7.82 85.13 0.67 25.27 16 8 O -0.61 -29.63 16.88 -4.49 -0.08 -29.71 16 9 N -0.64 -28.57 3.69 -868.78 -3.20 -31.77 16 10 C 0.09 3.87 7.66 83.25 0.64 4.50 16 11 C 0.22 10.85 1.58 -11.11 -0.02 10.83 16 12 O -0.59 -31.74 13.55 -148.98 -2.02 -33.76 16 13 C -0.55 -27.92 8.70 25.60 0.22 -27.70 16 14 H 0.08 3.65 7.81 -2.91 -0.02 3.62 16 15 C 0.03 1.53 5.40 84.65 0.46 1.98 16 16 N -0.92 -46.92 11.01 21.45 0.24 -46.68 16 17 Si 0.97 39.54 29.54 68.60 2.03 41.57 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 C 0.11 4.85 8.02 83.18 0.67 5.51 16 22 C 0.07 1.69 11.39 85.69 0.98 2.67 16 23 N -0.33 -8.18 12.49 -56.18 -0.70 -8.88 16 24 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.23 1.47 8.06 -2.91 -0.02 1.45 16 28 H 0.14 3.69 7.45 -2.91 -0.02 3.67 16 29 H 0.13 4.08 6.75 -2.91 -0.02 4.06 16 30 H 0.09 3.83 8.10 -2.38 -0.02 3.81 16 31 H 0.06 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.39 21.19 6.32 -74.06 -0.47 20.72 16 33 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 34 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.10 4.23 8.10 -2.39 -0.02 4.21 16 36 H 0.19 4.38 7.31 -2.91 -0.02 4.36 16 Total: -1.00 -69.84 319.83 1.79 -68.05 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.64 Total: 33.88 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 6.35 Total: 15.02 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -5.13 Total: -95.05 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -2.09 Total: -63.46 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -69.84 1.79 -68.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321086775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.315 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds