Wall clock time and date at job start Mon Mar 30 2020 01:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 N 1.46495 * 109.46909 * 184.99684 * 4 2 1 6 6 C 1.36942 * 120.00045 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00262 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00048 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99956 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47405 * 89.99791 * 10 8 6 12 12 H 1.48498 * 109.47002 * 209.99897 * 10 8 6 13 13 H 1.48504 * 109.47034 * 329.99660 * 10 8 6 14 14 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 15 15 C 1.34773 * 119.99909 * 275.00159 * 14 2 1 16 16 O 1.21729 * 120.00312 * 359.97438 * 15 14 2 17 17 C 1.46499 * 119.99881 * 180.02562 * 15 14 2 18 18 C 1.37777 * 125.85608 * 180.02562 * 17 15 14 19 19 C 1.39931 * 107.68544 * 179.97438 * 18 17 15 20 20 O 1.35126 * 145.14391 * 179.97438 * 19 18 17 21 21 C 1.34379 * 109.62969 * 179.97438 * 20 19 18 22 22 C 1.34468 * 109.44380 * 359.97438 * 21 20 19 23 23 C 1.39136 * 107.40657 * 359.97438 * 19 18 17 24 24 N 1.37114 * 108.10524 * 359.77474 * 23 19 18 25 25 H 0.96999 * 125.74058 * 180.21689 * 24 23 19 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 30 30 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 31 31 H 0.96993 * 120.00506 * 0.02562 * 5 4 2 32 32 H 0.97005 * 119.99727 * 180.02562 * 9 8 6 33 33 H 0.97003 * 119.99825 * 95.00368 * 14 2 1 34 34 H 1.08001 * 126.16255 * 359.97438 * 18 17 15 35 35 H 1.07988 * 125.27882 * 180.02562 * 21 20 19 36 36 H 1.07994 * 126.41226 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.1840 -1.4377 -2.2073 7 1 3.6470 -1.8421 -3.0526 8 6 5.5674 -1.5368 -2.1519 9 7 6.2247 -2.1249 -3.1289 10 14 6.4963 -0.8366 -0.6903 11 1 6.6279 -1.8797 0.3584 12 1 7.8469 -0.3990 -1.1256 13 1 5.7523 0.3257 -0.1417 14 7 2.0184 -0.6906 1.1961 15 6 2.1470 -0.0184 2.3571 16 8 1.8579 1.1628 2.4117 17 6 2.6358 -0.7089 3.5531 18 6 2.8126 -0.1423 4.7965 19 6 3.2919 -1.1392 5.6536 20 8 3.6916 -1.4203 6.9134 21 6 4.0454 -2.7140 6.9966 22 6 3.8836 -3.3004 5.7974 23 6 3.4000 -2.3105 4.9104 24 7 2.9923 -2.0414 3.6292 25 1 2.9620 -2.6787 2.8986 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6055 -1.7197 -1.2953 30 1 1.7517 -0.1582 -2.1370 31 1 3.9824 -0.4627 -0.4316 32 1 7.1915 -2.1945 -3.0900 33 1 2.2491 -1.6318 1.1525 34 1 2.6167 0.8860 5.0619 35 1 4.4034 -3.2066 7.8885 36 1 4.0864 -4.3334 5.5564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321532738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:55 Heat of formation + Delta-G solvation = 40.132547 kcal Electronic energy + Delta-G solvation = -21035.150919 eV Core-core repulsion = 17715.732511 eV Total energy + Delta-G solvation = -3319.418407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.04745 -40.25792 -38.73214 -36.41835 -33.88234 -32.52890 -31.75056 -30.77961 -30.36722 -28.27014 -26.07140 -24.04849 -22.24317 -21.78701 -20.99454 -20.71671 -20.14844 -18.58650 -17.75009 -17.18659 -16.39024 -16.16987 -15.60277 -15.06874 -14.79368 -14.49496 -14.10759 -13.84248 -13.63365 -13.41391 -12.97169 -12.89200 -12.71250 -12.47307 -12.33178 -11.96006 -11.88636 -11.20155 -10.96884 -10.59971 -10.24941 -10.22733 -10.11042 -9.69773 -9.09937 -9.00167 -8.74266 -8.00393 -7.36521 -5.86934 -3.23878 0.87836 2.10678 2.35743 2.54087 2.75091 3.23946 3.29213 3.31469 3.35892 3.39655 4.42276 4.49921 4.59972 4.82691 4.99858 5.12634 5.22282 5.35492 5.37383 5.40020 5.47852 5.64598 5.72685 5.81733 5.93810 5.95578 6.16871 6.21529 6.23778 6.44212 6.47687 6.67658 6.99755 7.15091 7.50841 7.87773 8.13690 8.31655 9.09775 9.82036 10.00802 11.31012 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.005481 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.768219 B = 5107.148459 C = 6335.838124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 H 0.092 0.908 4 C 0.148 3.852 5 N -0.756 5.756 6 C -0.250 4.250 7 H 0.092 0.908 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.880 3.120 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.712 5.712 15 C 0.588 3.412 16 O -0.526 6.526 17 C 0.011 3.989 18 C -0.082 4.082 19 C -0.041 4.041 20 O -0.169 6.169 21 C 0.008 3.992 22 C -0.201 4.201 23 C 0.011 3.989 24 N -0.529 5.529 25 H 0.423 0.577 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.362 0.638 32 H 0.261 0.739 33 H 0.399 0.601 34 H 0.160 0.840 35 H 0.212 0.788 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 -1.917 18.003 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.110 0.890 4 C 0.021 3.979 5 N -0.403 5.403 6 C -0.379 4.379 7 H 0.110 0.890 8 C -0.187 4.187 9 N -0.578 5.578 10 Si 0.710 3.290 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.203 1.203 14 N -0.363 5.363 15 C 0.374 3.626 16 O -0.402 6.402 17 C -0.102 4.102 18 C -0.110 4.110 19 C -0.093 4.093 20 O -0.067 6.067 21 C -0.059 4.059 22 C -0.222 4.222 23 C -0.102 4.102 24 N -0.133 5.133 25 H 0.261 0.739 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.195 0.805 32 H 0.071 0.929 33 H 0.233 0.767 34 H 0.178 0.822 35 H 0.228 0.772 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.217 -1.030 17.862 20.126 hybrid contribution 1.096 -0.665 0.491 1.372 sum -8.122 -1.695 18.352 20.141 Atomic orbital electron populations 1.22098 0.94786 1.02180 1.02585 1.21404 0.94026 0.98106 0.83876 0.88994 1.20985 0.85504 0.97674 0.93786 1.42728 1.01290 1.71399 1.24835 1.19046 0.89906 1.29573 0.99407 0.89035 1.24653 0.96156 1.00369 0.97524 1.69696 1.07435 1.48214 1.32432 0.86632 0.80053 0.79157 0.83191 1.21172 1.21455 1.20268 1.45955 1.66682 1.14134 1.09534 1.16839 0.77915 0.86247 0.81575 1.90858 1.50608 1.14351 1.84379 1.20363 1.10964 0.82988 0.95898 1.19864 1.04964 0.98450 0.87719 1.19276 1.10213 0.96492 0.83295 1.84016 1.68154 1.27160 1.27375 1.24028 1.01472 0.81011 0.99431 1.20587 1.10128 0.99846 0.91632 1.19039 1.07879 0.97096 0.86219 1.41214 1.53748 1.09394 1.08974 0.73879 0.92384 0.92152 0.91191 0.94848 0.93682 0.80462 0.92932 0.76657 0.82193 0.77187 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 37.16 0.35 -1.57 16 2 C 0.13 1.96 2.73 -67.93 -0.19 1.77 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 C 0.15 2.62 5.82 -4.05 -0.02 2.59 16 5 N -0.76 -17.12 5.24 -59.91 -0.31 -17.44 16 6 C -0.25 -6.84 10.47 -15.06 -0.16 -6.99 16 7 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 8 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 9 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 10 Si 0.88 22.10 27.74 -169.99 -4.71 17.39 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 14 N -0.71 -10.31 4.51 -55.17 -0.25 -10.56 16 15 C 0.59 9.21 7.74 -12.93 -0.10 9.11 16 16 O -0.53 -9.60 16.53 5.16 0.09 -9.52 16 17 C 0.01 0.15 7.03 -81.86 -0.58 -0.42 16 18 C -0.08 -1.16 10.58 -39.12 -0.41 -1.58 16 19 C -0.04 -0.57 8.20 -38.61 -0.32 -0.89 16 20 O -0.17 -2.08 10.68 3.19 0.03 -2.05 16 21 C 0.01 0.07 12.02 29.40 0.35 0.43 16 22 C -0.20 -2.01 10.89 -39.69 -0.43 -2.44 16 23 C 0.01 0.14 8.11 -83.95 -0.68 -0.54 16 24 N -0.53 -6.61 6.08 -7.04 -0.04 -6.66 16 25 H 0.42 4.33 8.16 -40.82 -0.33 4.00 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.36 8.28 5.19 -40.82 -0.21 8.07 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.40 5.20 7.69 -40.82 -0.31 4.88 16 34 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -34.32 313.92 -6.20 -40.52 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.23 Total: 11.89 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.28 Total: -0.36 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.17 Total: -62.60 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.12 Total: -11.57 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.32 -6.20 -40.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321532738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.650 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds