Wall clock time and date at job start Mon Mar 30 2020 01:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 N 1.46495 * 109.46909 * 184.99684 * 4 2 1 6 6 C 1.36942 * 120.00045 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00262 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00048 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99956 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47405 * 89.99791 * 10 8 6 12 12 H 1.48498 * 109.47002 * 209.99897 * 10 8 6 13 13 H 1.48504 * 109.47034 * 329.99660 * 10 8 6 14 14 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 15 15 C 1.34773 * 119.99909 * 275.00159 * 14 2 1 16 16 O 1.21729 * 120.00312 * 359.97438 * 15 14 2 17 17 C 1.46499 * 119.99881 * 180.02562 * 15 14 2 18 18 C 1.37777 * 125.85608 * 180.02562 * 17 15 14 19 19 C 1.39931 * 107.68544 * 179.97438 * 18 17 15 20 20 O 1.35126 * 145.14391 * 179.97438 * 19 18 17 21 21 C 1.34379 * 109.62969 * 179.97438 * 20 19 18 22 22 C 1.34468 * 109.44380 * 359.97438 * 21 20 19 23 23 C 1.39136 * 107.40657 * 359.97438 * 19 18 17 24 24 N 1.37114 * 108.10524 * 359.77474 * 23 19 18 25 25 H 0.96999 * 125.74058 * 180.21689 * 24 23 19 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 30 30 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 31 31 H 0.96993 * 120.00506 * 0.02562 * 5 4 2 32 32 H 0.97005 * 119.99727 * 180.02562 * 9 8 6 33 33 H 0.97003 * 119.99825 * 95.00368 * 14 2 1 34 34 H 1.08001 * 126.16255 * 359.97438 * 18 17 15 35 35 H 1.07988 * 125.27882 * 180.02562 * 21 20 19 36 36 H 1.07994 * 126.41226 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.1840 -1.4377 -2.2073 7 1 3.6470 -1.8421 -3.0526 8 6 5.5674 -1.5368 -2.1519 9 7 6.2247 -2.1249 -3.1289 10 14 6.4963 -0.8366 -0.6903 11 1 6.6279 -1.8797 0.3584 12 1 7.8469 -0.3990 -1.1256 13 1 5.7523 0.3257 -0.1417 14 7 2.0184 -0.6906 1.1961 15 6 2.1470 -0.0184 2.3571 16 8 1.8579 1.1628 2.4117 17 6 2.6358 -0.7089 3.5531 18 6 2.8126 -0.1423 4.7965 19 6 3.2919 -1.1392 5.6536 20 8 3.6916 -1.4203 6.9134 21 6 4.0454 -2.7140 6.9966 22 6 3.8836 -3.3004 5.7974 23 6 3.4000 -2.3105 4.9104 24 7 2.9923 -2.0414 3.6292 25 1 2.9620 -2.6787 2.8986 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6055 -1.7197 -1.2953 30 1 1.7517 -0.1582 -2.1370 31 1 3.9824 -0.4627 -0.4316 32 1 7.1915 -2.1945 -3.0900 33 1 2.2491 -1.6318 1.1525 34 1 2.6167 0.8860 5.0619 35 1 4.4034 -3.2066 7.8885 36 1 4.0864 -4.3334 5.5564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321532738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:55 Heat of formation + Delta-G solvation = 14.543253 kcal Electronic energy + Delta-G solvation = -21036.260554 eV Core-core repulsion = 17715.732511 eV Total energy + Delta-G solvation = -3320.528042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.94114 -41.36268 -39.81004 -37.85638 -35.62181 -33.53038 -33.30123 -32.17328 -31.50413 -29.22263 -27.66770 -25.13897 -24.03127 -22.71326 -22.20697 -21.73102 -21.28528 -19.91864 -19.34263 -18.19043 -17.44114 -17.29084 -16.75468 -16.58443 -16.14856 -15.96150 -15.46220 -14.93482 -14.87136 -14.55890 -14.42542 -14.20390 -13.91836 -13.72140 -13.68814 -13.24871 -12.93604 -12.81380 -12.66534 -12.26616 -11.94393 -11.80527 -11.39463 -11.10595 -11.05807 -10.29744 -9.69774 -9.36444 -8.92682 -8.07969 -5.41046 -0.10131 1.16832 1.29321 1.33948 1.39089 1.45597 1.65734 1.74383 2.16493 2.24154 2.40365 3.24225 3.48313 3.58012 3.70441 3.88760 3.93658 4.22884 4.27576 4.37700 4.45590 4.66863 4.72973 4.74890 4.81627 4.91023 4.99754 5.05808 5.28629 5.36594 5.41908 5.52924 5.72384 6.10193 6.15994 6.23547 6.39629 6.95695 7.02003 7.77500 7.94723 9.13311 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.005481 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.768219 B = 5107.148459 C = 6335.838124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.137 3.863 3 H 0.074 0.926 4 C 0.147 3.853 5 N -0.759 5.759 6 C -0.231 4.231 7 H 0.067 0.933 8 C -0.053 4.053 9 N -0.978 5.978 10 Si 0.943 3.057 11 H -0.274 1.274 12 H -0.296 1.296 13 H -0.268 1.268 14 N -0.707 5.707 15 C 0.591 3.409 16 O -0.559 6.559 17 C -0.010 4.010 18 C -0.089 4.089 19 C -0.074 4.074 20 O -0.184 6.184 21 C 0.032 3.968 22 C -0.219 4.219 23 C 0.010 3.990 24 N -0.523 5.523 25 H 0.431 0.569 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.363 0.637 32 H 0.258 0.742 33 H 0.407 0.593 34 H 0.162 0.838 35 H 0.262 0.738 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -2.833 20.175 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.033 3.967 3 H 0.092 0.908 4 C 0.021 3.979 5 N -0.405 5.405 6 C -0.362 4.362 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.629 5.629 10 Si 0.771 3.229 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.194 1.194 14 N -0.358 5.358 15 C 0.378 3.622 16 O -0.438 6.438 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.125 4.125 20 O -0.082 6.082 21 C -0.035 4.035 22 C -0.240 4.240 23 C -0.105 4.105 24 N -0.128 5.128 25 H 0.272 0.728 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.196 0.804 32 H 0.067 0.933 33 H 0.243 0.757 34 H 0.179 0.821 35 H 0.277 0.723 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.689 -1.957 20.037 22.343 hybrid contribution 1.164 -0.449 -0.131 1.254 sum -8.526 -2.406 19.906 21.789 Atomic orbital electron populations 1.22021 0.92149 1.03392 1.03107 1.21275 0.95911 0.96628 0.82874 0.90829 1.21166 0.82654 0.98823 0.95287 1.42745 1.03295 1.70833 1.23610 1.19062 0.89987 1.27860 0.99268 0.91533 1.25326 0.97250 1.01736 1.00216 1.69849 1.07515 1.50693 1.34803 0.85604 0.78194 0.78828 0.80227 1.20025 1.22305 1.19395 1.45891 1.66397 1.14427 1.09086 1.16955 0.77341 0.85852 0.82011 1.90832 1.52245 1.15729 1.84944 1.20087 1.12836 0.83891 0.95429 1.20019 1.04659 0.98873 0.88140 1.19393 1.11913 0.96927 0.84312 1.84025 1.68434 1.29036 1.26691 1.25108 0.98279 0.79427 1.00722 1.21028 1.10830 1.00799 0.91310 1.19596 1.06907 0.97799 0.86164 1.41149 1.53355 1.08902 1.09362 0.72828 0.90813 0.92568 0.89735 0.93292 0.93349 0.80435 0.93279 0.75743 0.82067 0.72267 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.48 71.98 0.68 -2.62 16 2 C 0.14 3.96 2.73 44.99 0.12 4.08 16 3 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 4 C 0.15 4.96 5.82 86.38 0.50 5.46 16 5 N -0.76 -33.51 5.24 -343.46 -1.80 -35.31 16 6 C -0.23 -12.60 10.47 84.03 0.88 -11.72 16 7 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 8 C -0.05 -3.06 5.50 84.86 0.47 -2.59 16 9 N -0.98 -61.29 13.97 21.65 0.30 -60.99 16 10 Si 0.94 45.67 27.74 68.60 1.90 47.57 16 11 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 13 H -0.27 -12.47 6.52 99.48 0.65 -11.82 16 14 N -0.71 -19.64 4.51 -446.66 -2.02 -21.65 16 15 C 0.59 18.24 7.74 86.40 0.67 18.91 16 16 O -0.56 -20.48 16.53 -4.44 -0.07 -20.56 16 17 C -0.01 -0.28 7.03 40.19 0.28 0.00 16 18 C -0.09 -2.51 10.58 22.57 0.24 -2.28 16 19 C -0.07 -1.99 8.20 22.90 0.19 -1.80 16 20 O -0.18 -4.16 10.68 -11.52 -0.12 -4.28 16 21 C 0.03 0.44 12.02 66.96 0.80 1.25 16 22 C -0.22 -3.69 10.89 22.20 0.24 -3.45 16 23 C 0.01 0.24 8.11 39.32 0.32 0.56 16 24 N -0.52 -12.41 6.08 -176.19 -1.07 -13.49 16 25 H 0.43 8.18 8.16 -92.71 -0.76 7.43 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.36 16.03 5.19 -92.71 -0.48 15.55 16 32 H 0.26 15.50 8.31 -92.70 -0.77 14.72 16 33 H 0.41 9.96 7.69 -92.71 -0.71 9.25 16 34 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.26 0.66 8.06 -2.92 -0.02 0.63 16 36 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -74.71 313.92 1.65 -73.05 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.87 Total: 29.85 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.40 Total: 5.79 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -4.58 Total: -131.43 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.20 Total: -24.83 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.57 kcal Total: -74.71 1.65 -73.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321532738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.597 kcal (2) G-P(sol) polarization free energy of solvation -74.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds