Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21513 * 119.99898 * 0.28095 * 3 2 1 5 5 C 1.48232 * 120.00016 * 180.27596 * 3 2 1 6 6 C 1.39631 * 119.65369 * 179.73021 * 5 3 2 7 7 C 1.38538 * 119.24418 * 179.73487 * 6 5 3 8 8 C 1.38586 * 118.55561 * 0.52587 * 7 6 5 9 9 C 1.39588 * 119.24353 * 359.73747 * 8 7 6 10 10 C 1.48222 * 119.65287 * 179.97438 * 9 8 7 11 11 O 1.21510 * 119.99746 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00145 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99933 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46775 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46825 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99855 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99986 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99722 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47066 * 90.00507 * 19 17 15 21 21 H 1.48501 * 109.46919 * 210.00146 * 19 17 15 22 22 H 1.48491 * 109.47167 * 329.99958 * 19 17 15 23 23 N 1.32336 * 119.65143 * 0.02562 * 5 3 2 24 24 H 1.09004 * 109.46963 * 299.72135 * 1 2 3 25 25 H 1.08994 * 109.47567 * 59.72287 * 1 2 3 26 26 H 1.09001 * 109.47007 * 179.72339 * 1 2 3 27 27 H 0.97001 * 120.00384 * 180.28447 * 2 1 3 28 28 H 1.07999 * 120.37264 * 0.02562 * 6 5 3 29 29 H 1.08004 * 120.72107 * 180.24403 * 7 6 5 30 30 H 1.07994 * 120.38050 * 179.75239 * 8 7 6 31 31 H 0.97001 * 120.00221 * 0.02562 * 12 10 9 32 32 H 1.09000 * 109.47146 * 299.99888 * 13 12 10 33 33 H 1.09002 * 109.47380 * 60.00363 * 13 12 10 34 34 H 1.09000 * 109.47163 * 299.99841 * 14 13 12 35 35 H 1.08998 * 109.47137 * 60.00490 * 14 13 12 36 36 H 0.96996 * 119.99282 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0052 5 6 3.6211 1.1673 -0.0062 6 6 4.3119 2.3807 -0.0119 7 6 5.6972 2.3709 -0.0120 8 6 6.3510 1.1490 -0.0177 9 6 5.5989 -0.0269 -0.0174 10 6 6.2888 -1.3388 -0.0240 11 8 7.5029 -1.3866 -0.0292 12 7 5.5694 -2.4785 -0.0244 13 6 6.2513 -3.7751 -0.0303 14 6 5.2120 -4.8979 -0.0301 15 6 5.9135 -6.2317 -0.0355 16 1 6.9927 -6.2743 -0.0385 17 6 5.1775 -7.3977 -0.0358 18 7 3.8634 -7.3458 -0.0317 19 14 6.0471 -9.0510 -0.0433 20 1 6.2827 -9.4927 1.3548 21 1 5.2017 -10.0517 -0.7428 22 1 7.3479 -8.9229 -0.7479 23 7 4.2759 0.0172 -0.0122 24 1 -0.3633 0.5095 0.8925 25 1 -0.3634 0.5181 -0.8874 26 1 -0.3633 -1.0277 -0.0050 27 1 1.9500 -0.8400 -0.0042 28 1 3.7723 3.3163 -0.0113 29 1 6.2556 3.2954 -0.0124 30 1 7.4302 1.1069 -0.0220 31 1 4.6002 -2.4403 -0.0206 32 1 6.8719 -3.8551 -0.9228 33 1 6.8785 -3.8599 0.8571 34 1 4.5911 -4.8180 0.8622 35 1 4.5852 -4.8130 -0.9177 36 1 3.3458 -8.1661 -0.0322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323781970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -45.142783 kcal Electronic energy + Delta-G solvation = -20312.472672 eV Core-core repulsion = 16989.356449 eV Total energy + Delta-G solvation = -3323.116223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02459 -39.55908 -38.48637 -35.05050 -34.87703 -33.19805 -32.67621 -31.90390 -29.60032 -27.43012 -25.58327 -24.43993 -23.84886 -21.37313 -20.86267 -20.41252 -18.63011 -17.73158 -16.44546 -16.32969 -16.13294 -15.72783 -15.67095 -15.11974 -14.93799 -14.58962 -14.39787 -13.98937 -13.74032 -13.28984 -13.14016 -12.76701 -12.43988 -12.37749 -12.30851 -11.25997 -11.06917 -10.91174 -10.67837 -10.39244 -10.32877 -10.12670 -9.88722 -9.55949 -9.54194 -9.29275 -9.27775 -8.61042 -8.40516 -6.12184 -4.15086 0.25525 0.64941 2.31277 2.87615 3.01294 3.27723 3.30373 3.34593 3.39473 3.76473 3.79523 4.38730 4.45949 4.61604 4.67577 4.72796 5.05416 5.20722 5.24464 5.25184 5.31063 5.58359 5.62826 5.75626 6.12303 6.15979 6.26933 6.27656 6.66184 6.78126 7.07544 7.35950 7.48414 7.57418 7.85335 7.90528 7.92336 8.22647 8.46160 8.90594 9.49919 10.99377 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.003866 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.945255 B = 7241.164637 C = 8736.358740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.713 5.713 3 C 0.574 3.426 4 O -0.536 6.536 5 C 0.075 3.925 6 C -0.096 4.096 7 C -0.087 4.087 8 C -0.091 4.091 9 C 0.089 3.911 10 C 0.560 3.440 11 O -0.540 6.540 12 N -0.697 5.697 13 C 0.118 3.882 14 C 0.012 3.988 15 C -0.523 4.523 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.434 5.434 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.416 0.584 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.406 0.594 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 18.386 0.045 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.364 5.364 3 C 0.359 3.641 4 O -0.412 6.412 5 C -0.066 4.066 6 C -0.117 4.117 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.052 4.052 10 C 0.343 3.657 11 O -0.417 6.417 12 N -0.346 5.346 13 C -0.003 4.003 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.148 5.148 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.252 0.748 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.242 0.758 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.265 18.123 0.041 18.415 hybrid contribution 0.547 -0.600 0.005 0.812 sum -2.718 17.522 0.046 17.732 Atomic orbital electron populations 1.21639 0.78844 1.02994 1.02360 1.45662 1.08037 1.09151 1.73548 1.17842 0.85564 0.84157 0.76583 1.90782 1.68769 1.31306 1.50370 1.21078 0.94187 0.89447 1.01864 1.22288 0.94762 0.99375 0.95236 1.21670 0.93937 0.98686 0.96933 1.22392 1.02828 0.91623 0.94373 1.21399 0.88860 0.95113 0.99832 1.17823 0.86654 0.83167 0.78056 1.90774 1.12869 1.86923 1.51180 1.46216 1.11114 1.06156 1.71070 1.21858 0.97047 0.80310 1.01129 1.19331 0.93747 0.91409 0.98007 1.21040 0.93271 0.90312 1.51497 0.92206 1.24987 0.94848 0.99432 0.94932 1.69952 1.04848 1.28130 1.50283 0.86514 0.79579 0.83265 0.78210 1.20556 1.21167 1.19716 1.67392 1.09554 1.29189 1.08710 0.91958 0.91965 0.89937 0.74792 0.82987 0.83193 0.82695 0.75835 0.92139 0.92138 0.95813 0.95799 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.70 59.85 0.64 1.37 16 2 N -0.71 -7.59 5.70 -67.92 -0.39 -7.98 16 3 C 0.57 7.19 7.81 -12.15 -0.09 7.10 16 4 O -0.54 -7.81 16.32 5.35 0.09 -7.73 16 5 C 0.08 0.90 6.75 -83.02 -0.56 0.34 16 6 C -0.10 -0.94 9.63 -38.95 -0.38 -1.32 16 7 C -0.09 -0.73 10.16 -39.34 -0.40 -1.13 16 8 C -0.09 -1.00 9.63 -38.95 -0.38 -1.38 16 9 C 0.09 1.22 6.75 -83.03 -0.56 0.66 16 10 C 0.56 9.47 7.81 -12.16 -0.09 9.38 16 11 O -0.54 -10.52 16.32 5.36 0.09 -10.43 16 12 N -0.70 -12.15 5.54 -61.13 -0.34 -12.49 16 13 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 14 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 N -0.43 -5.61 8.71 -6.38 -0.06 -5.67 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.42 4.18 8.16 -40.82 -0.33 3.85 16 28 H 0.15 1.29 7.64 -52.49 -0.40 0.89 16 29 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 30 H 0.16 1.57 7.64 -52.49 -0.40 1.17 16 31 H 0.41 6.43 7.80 -40.82 -0.32 6.12 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -32.35 323.60 -6.79 -39.13 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.38 Total: 4.48 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -2.40 Total: 4.66 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.05 Total: -50.99 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.35 -6.79 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323781970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.009 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds