Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21513 * 119.99898 * 0.28095 * 3 2 1 5 5 C 1.48232 * 120.00016 * 180.27596 * 3 2 1 6 6 C 1.39631 * 119.65369 * 179.73021 * 5 3 2 7 7 C 1.38538 * 119.24418 * 179.73487 * 6 5 3 8 8 C 1.38586 * 118.55561 * 0.52587 * 7 6 5 9 9 C 1.39588 * 119.24353 * 359.73747 * 8 7 6 10 10 C 1.48222 * 119.65287 * 179.97438 * 9 8 7 11 11 O 1.21510 * 119.99746 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00145 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99933 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46775 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46825 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99855 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99986 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99722 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47066 * 90.00507 * 19 17 15 21 21 H 1.48501 * 109.46919 * 210.00146 * 19 17 15 22 22 H 1.48491 * 109.47167 * 329.99958 * 19 17 15 23 23 N 1.32336 * 119.65143 * 0.02562 * 5 3 2 24 24 H 1.09004 * 109.46963 * 299.72135 * 1 2 3 25 25 H 1.08994 * 109.47567 * 59.72287 * 1 2 3 26 26 H 1.09001 * 109.47007 * 179.72339 * 1 2 3 27 27 H 0.97001 * 120.00384 * 180.28447 * 2 1 3 28 28 H 1.07999 * 120.37264 * 0.02562 * 6 5 3 29 29 H 1.08004 * 120.72107 * 180.24403 * 7 6 5 30 30 H 1.07994 * 120.38050 * 179.75239 * 8 7 6 31 31 H 0.97001 * 120.00221 * 0.02562 * 12 10 9 32 32 H 1.09000 * 109.47146 * 299.99888 * 13 12 10 33 33 H 1.09002 * 109.47380 * 60.00363 * 13 12 10 34 34 H 1.09000 * 109.47163 * 299.99841 * 14 13 12 35 35 H 1.08998 * 109.47137 * 60.00490 * 14 13 12 36 36 H 0.96996 * 119.99282 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0052 5 6 3.6211 1.1673 -0.0062 6 6 4.3119 2.3807 -0.0119 7 6 5.6972 2.3709 -0.0120 8 6 6.3510 1.1490 -0.0177 9 6 5.5989 -0.0269 -0.0174 10 6 6.2888 -1.3388 -0.0240 11 8 7.5029 -1.3866 -0.0292 12 7 5.5694 -2.4785 -0.0244 13 6 6.2513 -3.7751 -0.0303 14 6 5.2120 -4.8979 -0.0301 15 6 5.9135 -6.2317 -0.0355 16 1 6.9927 -6.2743 -0.0385 17 6 5.1775 -7.3977 -0.0358 18 7 3.8634 -7.3458 -0.0317 19 14 6.0471 -9.0510 -0.0433 20 1 6.2827 -9.4927 1.3548 21 1 5.2017 -10.0517 -0.7428 22 1 7.3479 -8.9229 -0.7479 23 7 4.2759 0.0172 -0.0122 24 1 -0.3633 0.5095 0.8925 25 1 -0.3634 0.5181 -0.8874 26 1 -0.3633 -1.0277 -0.0050 27 1 1.9500 -0.8400 -0.0042 28 1 3.7723 3.3163 -0.0113 29 1 6.2556 3.2954 -0.0124 30 1 7.4302 1.1069 -0.0220 31 1 4.6002 -2.4403 -0.0206 32 1 6.8719 -3.8551 -0.9228 33 1 6.8785 -3.8599 0.8571 34 1 4.5911 -4.8180 0.8622 35 1 4.5852 -4.8130 -0.9177 36 1 3.3458 -8.1661 -0.0322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323781970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -69.472338 kcal Electronic energy + Delta-G solvation = -20313.527681 eV Core-core repulsion = 16989.356449 eV Total energy + Delta-G solvation = -3324.171232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99316 -40.70912 -39.62277 -36.68182 -35.79392 -34.88911 -33.79108 -32.92652 -31.36859 -28.22790 -27.20527 -25.53998 -24.98805 -22.96443 -22.05543 -21.58866 -19.64964 -18.92658 -18.37999 -17.19139 -17.08694 -16.85824 -16.79783 -16.45117 -16.39035 -16.19416 -15.41447 -15.23035 -14.88476 -14.45286 -14.33443 -14.21940 -13.75930 -13.23716 -13.17086 -13.10479 -12.93535 -12.53082 -12.24902 -12.02095 -11.67632 -11.45525 -11.16499 -11.13475 -10.73864 -10.59576 -10.51921 -10.18257 -10.02274 -8.22661 -6.32843 -0.64792 -0.22585 1.34750 1.43534 1.43688 1.55022 1.86687 1.98960 2.09381 2.43346 2.76869 2.78132 3.12515 3.54634 3.78440 3.79629 3.90382 4.28040 4.37570 4.45548 4.48741 4.49107 4.61326 4.85068 4.90198 4.92753 4.95650 5.22573 5.29235 5.36415 5.47501 5.58724 5.78913 6.13132 6.16449 6.39906 6.61417 6.80096 7.00135 7.08966 7.36444 8.89162 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.003866 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.945255 B = 7241.164637 C = 8736.358740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.710 5.710 3 C 0.570 3.430 4 O -0.561 6.561 5 C 0.059 3.941 6 C -0.086 4.086 7 C -0.065 4.065 8 C -0.087 4.087 9 C 0.065 3.935 10 C 0.562 3.438 11 O -0.569 6.569 12 N -0.697 5.697 13 C 0.137 3.863 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.964 3.036 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.266 1.266 23 N -0.442 5.442 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.418 0.582 28 H 0.170 0.830 29 H 0.196 0.804 30 H 0.164 0.836 31 H 0.414 0.586 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 19.542 0.051 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.360 5.360 3 C 0.355 3.645 4 O -0.440 6.440 5 C -0.082 4.082 6 C -0.107 4.107 7 C -0.090 4.090 8 C -0.108 4.108 9 C -0.075 4.075 10 C 0.348 3.652 11 O -0.448 6.448 12 N -0.347 5.347 13 C 0.014 3.986 14 C -0.015 4.015 15 C -0.585 4.585 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.190 1.190 23 N -0.157 5.157 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.254 0.746 28 H 0.188 0.812 29 H 0.213 0.787 30 H 0.182 0.818 31 H 0.250 0.750 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.708 19.276 0.048 19.466 hybrid contribution 0.320 -0.874 0.004 0.931 sum -2.388 18.402 0.052 18.556 Atomic orbital electron populations 1.21803 0.77659 1.04457 1.02306 1.45775 1.08970 1.08833 1.72457 1.18000 0.85920 0.84212 0.76348 1.90761 1.69258 1.32044 1.51960 1.21180 0.94009 0.90055 1.02981 1.22605 0.95520 0.99162 0.93404 1.22108 0.93328 0.99284 0.94264 1.22584 1.03248 0.91522 0.93424 1.20968 0.89358 0.94106 1.03077 1.18246 0.86380 0.83966 0.76638 1.90746 1.14138 1.87560 1.52392 1.46034 1.11449 1.05473 1.71698 1.21375 0.95800 0.80935 1.00458 1.19135 0.93940 0.91971 0.96443 1.21465 0.93638 0.91827 1.51541 0.92113 1.25844 0.95548 1.03206 0.94420 1.70057 1.06212 1.29248 1.50986 0.85466 0.78602 0.78631 0.78477 1.19839 1.20649 1.19000 1.67219 1.09363 1.30092 1.09035 0.91986 0.91996 0.87782 0.74582 0.81232 0.78660 0.81835 0.74988 0.92818 0.92793 0.97281 0.97265 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.70 127.77 1.37 2.69 16 2 N -0.71 -14.84 5.70 -487.09 -2.78 -17.62 16 3 C 0.57 13.90 7.81 86.90 0.68 14.58 16 4 O -0.56 -15.94 16.32 -3.76 -0.06 -16.00 16 5 C 0.06 1.34 6.75 42.06 0.28 1.62 16 6 C -0.09 -1.46 9.63 22.68 0.22 -1.24 16 7 C -0.06 -0.85 10.16 22.42 0.23 -0.62 16 8 C -0.09 -1.71 9.63 22.68 0.22 -1.49 16 9 C 0.07 1.74 6.75 42.04 0.28 2.02 16 10 C 0.56 19.06 7.81 86.90 0.68 19.74 16 11 O -0.57 -22.20 16.32 -3.75 -0.06 -22.26 16 12 N -0.70 -24.75 5.54 -465.60 -2.58 -27.33 16 13 C 0.14 5.79 5.61 86.38 0.48 6.28 16 14 C 0.02 1.12 5.09 29.85 0.15 1.27 16 15 C -0.55 -29.97 9.11 25.60 0.23 -29.74 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 17 C 0.01 0.48 5.46 84.66 0.46 0.94 16 18 N -0.93 -53.46 13.29 21.45 0.28 -53.18 16 19 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 23 N -0.44 -11.17 8.71 -174.08 -1.52 -12.69 16 24 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.42 8.36 8.16 -92.71 -0.76 7.60 16 28 H 0.17 2.31 7.64 -2.91 -0.02 2.29 16 29 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 30 H 0.16 2.93 7.64 -2.91 -0.02 2.91 16 31 H 0.41 13.41 7.80 -92.71 -0.72 12.69 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -69.77 323.60 0.25 -69.52 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.36 Total: 18.51 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.29 Total: 16.06 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -6.59 Total: -110.81 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.12 Total: -38.27 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -69.77 0.25 -69.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323781970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.050 kcal (2) G-P(sol) polarization free energy of solvation -69.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds