Wall clock time and date at job start Mon Mar 30 2020 01:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46490 * 120.00123 * 2 1 4 4 C 1.50700 * 109.47478 * 269.99862 * 3 2 1 5 5 H 1.08007 * 119.99544 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00447 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00381 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 120.00077 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47054 * 89.99554 * 8 6 4 10 10 H 1.48499 * 109.47089 * 209.99833 * 8 6 4 11 11 H 1.48503 * 109.46625 * 329.99840 * 8 6 4 12 12 C 1.34777 * 119.99593 * 179.97438 * 2 1 3 13 13 O 1.21568 * 119.99698 * 174.48026 * 12 2 1 14 14 C 1.47776 * 120.00149 * 354.75884 * 12 2 1 15 15 C 1.41168 * 126.16822 * 173.68007 * 14 12 2 16 16 C 1.36852 * 104.89436 * 179.97438 * 15 14 12 17 17 N 1.37821 * 107.44928 * 0.02562 * 16 15 14 18 18 N 1.28087 * 109.00344 * 359.72333 * 17 16 15 19 19 C 1.46765 * 123.00521 * 179.97438 * 17 16 15 20 20 C 1.52977 * 109.78077 * 338.48529 * 19 17 16 21 21 C 1.53285 * 110.60369 * 53.54028 * 20 19 17 22 22 C 1.46821 * 130.33120 * 180.02562 * 16 15 14 23 23 O 1.21337 * 122.52554 * 349.46897 * 22 16 15 24 24 H 1.09008 * 109.47045 * 265.31297 * 1 2 3 25 25 H 1.09001 * 109.46848 * 25.30536 * 1 2 3 26 26 H 1.09001 * 109.47354 * 145.30975 * 1 2 3 27 27 H 1.09008 * 109.47538 * 30.00353 * 3 2 1 28 28 H 1.09000 * 109.47190 * 150.00227 * 3 2 1 29 29 H 0.96999 * 120.00228 * 179.97438 * 7 6 4 30 30 H 1.07997 * 127.55106 * 359.97438 * 15 14 12 31 31 H 1.08998 * 109.42301 * 218.38875 * 19 17 16 32 32 H 1.09002 * 109.36182 * 98.54118 * 19 17 16 33 33 H 1.08996 * 109.24643 * 293.24935 * 20 19 17 34 34 H 1.08996 * 109.21586 * 173.80852 * 20 19 17 35 35 H 1.09002 * 109.77755 * 176.56666 * 21 20 19 36 36 H 1.09003 * 109.78041 * 55.76351 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8778 -1.6727 7 7 3.3457 3.2573 -2.9127 8 14 3.7330 3.9292 -0.2529 9 1 5.1065 3.5080 0.1230 10 1 3.7479 5.3559 -0.6644 11 1 2.8270 3.7592 0.9114 12 6 2.1388 -1.1672 0.0005 13 8 3.3503 -1.1698 -0.1007 14 6 1.4045 -2.4443 0.1180 15 6 1.9595 -3.7376 0.0078 16 6 0.9037 -4.5898 0.1866 17 7 -0.2198 -3.8185 0.3919 18 7 0.1102 -2.5815 0.3507 19 6 -1.5516 -4.3910 0.6214 20 6 -1.6005 -5.8211 0.0807 21 6 -0.4570 -6.6582 0.6649 22 6 0.8557 -6.0572 0.1820 23 8 1.7918 -6.7395 -0.1793 24 1 -0.3633 -0.0840 1.0243 25 1 -0.3633 0.9291 -0.4393 26 1 -0.3634 -0.8450 -0.5849 27 1 1.6085 2.0284 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.8219 4.0835 -3.0899 30 1 2.9913 -3.9975 -0.1771 31 1 -2.2997 -3.7847 0.1108 32 1 -1.7614 -4.4007 1.6910 33 1 -1.5104 -5.7979 -1.0053 34 1 -2.5534 -6.2751 0.3526 35 1 -0.5400 -7.6885 0.3190 36 1 -0.4979 -6.6296 1.7538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332081159.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:41 Heat of formation + Delta-G solvation = -6.456921 kcal Electronic energy + Delta-G solvation = -21184.556551 eV Core-core repulsion = 17863.117872 eV Total energy + Delta-G solvation = -3321.438678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.86152 -40.61817 -40.07365 -36.86433 -36.75374 -34.71124 -33.05186 -31.88565 -30.28584 -29.15995 -27.51652 -25.76771 -23.98393 -23.78095 -22.90088 -20.83968 -19.56220 -19.15363 -18.38251 -18.00790 -17.27610 -17.17391 -16.44803 -16.39783 -15.98663 -15.79618 -15.60275 -15.26175 -14.93138 -14.49934 -14.26460 -13.92028 -13.74890 -13.65695 -13.28882 -13.21876 -12.95546 -12.44796 -12.37635 -12.20193 -12.04251 -11.89125 -11.75111 -11.11417 -10.98552 -10.82860 -10.44880 -10.23886 -9.46132 -8.33657 -6.39866 -0.22360 0.47590 1.24224 1.34124 1.39192 1.47581 1.58768 2.12067 2.32217 2.33979 2.76258 2.99563 3.01371 3.57192 3.59579 3.76014 4.01322 4.20498 4.23913 4.34376 4.44894 4.53481 4.58311 4.65685 4.77699 4.86802 4.89683 4.95023 4.95648 5.06885 5.11976 5.43065 5.48527 5.60301 6.20619 6.22621 6.50349 6.60911 6.67474 7.15078 7.28671 8.83706 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036583 B = 0.004015 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.201351 B = 6972.151955 C = 7322.870677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.591 5.591 3 C 0.224 3.776 4 C -0.540 4.540 5 H 0.024 0.976 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.234 1.234 12 C 0.581 3.419 13 O -0.582 6.582 14 C -0.047 4.047 15 C -0.121 4.121 16 C -0.087 4.087 17 N -0.242 5.242 18 N -0.210 5.210 19 C 0.098 3.902 20 C -0.123 4.123 21 C -0.153 4.153 22 C 0.430 3.570 23 O -0.477 6.477 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.023 0.977 29 H 0.269 0.731 30 H 0.156 0.844 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.157 0.843 35 H 0.125 0.875 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.672 -19.952 12.497 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.321 5.321 3 C 0.102 3.898 4 C -0.578 4.578 5 H 0.043 0.957 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.157 1.157 12 C 0.368 3.632 13 O -0.462 6.462 14 C -0.201 4.201 15 C -0.150 4.150 16 C -0.210 4.210 17 N -0.038 5.038 18 N -0.053 5.053 19 C -0.018 4.018 20 C -0.161 4.161 21 C -0.190 4.190 22 C 0.306 3.694 23 O -0.350 6.350 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.174 0.826 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.092 0.908 34 H 0.175 0.825 35 H 0.143 0.857 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.603 -19.601 12.347 29.711 hybrid contribution 1.810 0.591 -0.469 1.960 sum -16.794 -19.010 11.879 28.009 Atomic orbital electron populations 1.21989 0.77088 1.03127 1.02851 1.47796 1.08783 1.05493 1.70047 1.19472 0.92821 0.81783 0.95675 1.21524 1.37230 1.06876 0.92199 0.95749 1.25895 0.95061 0.98856 0.98890 1.70057 1.42609 1.24491 1.21448 0.85665 0.79646 0.77649 0.79693 1.20095 1.19755 1.15723 1.17420 0.86015 0.82830 0.76953 1.90729 1.15386 1.87173 1.52865 1.21685 0.90841 0.94265 1.13335 1.21982 1.00598 0.90516 1.01874 1.22537 0.87993 0.96240 1.14222 1.47184 1.09941 1.01622 1.45088 1.73459 1.14205 1.01763 1.15878 1.22954 0.76652 0.95854 1.06310 1.21992 1.01421 0.90936 1.01725 1.22574 0.89111 1.02356 1.04966 1.22681 0.90313 0.84098 0.72262 1.90616 1.41530 1.64672 1.38177 0.90394 0.91096 0.90206 0.92201 0.95922 0.92162 0.82600 0.85185 0.84832 0.90771 0.82499 0.85713 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.10 9.31 127.77 1.19 4.29 16 2 N -0.59 -26.93 2.86 -854.64 -2.44 -29.37 16 3 C 0.22 11.52 4.17 85.63 0.36 11.87 16 4 C -0.54 -33.26 9.94 25.60 0.25 -33.01 16 5 H 0.02 1.69 8.06 -2.91 -0.02 1.67 16 6 C 0.01 0.66 5.47 84.65 0.46 1.12 16 7 N -0.95 -61.44 13.96 21.44 0.30 -61.14 16 8 Si 0.95 45.27 27.47 68.60 1.88 47.15 16 9 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.23 -9.90 6.54 99.48 0.65 -9.25 16 12 C 0.58 27.58 7.67 86.77 0.67 28.25 16 13 O -0.58 -32.76 16.55 -3.93 -0.07 -32.82 16 14 C -0.05 -1.77 6.73 42.33 0.28 -1.49 16 15 C -0.12 -4.17 10.85 22.66 0.25 -3.92 16 16 C -0.09 -2.18 6.73 40.12 0.27 -1.91 16 17 N -0.24 -4.88 3.81 -334.81 -1.28 -6.16 16 18 N -0.21 -5.98 8.77 -48.14 -0.42 -6.41 16 19 C 0.10 0.56 7.16 86.32 0.62 1.18 16 20 C -0.12 -0.17 5.85 30.68 0.18 0.01 16 21 C -0.15 -0.85 6.23 30.44 0.19 -0.66 16 22 C 0.43 8.47 7.10 28.42 0.20 8.67 16 23 O -0.48 -13.34 17.97 -3.20 -0.06 -13.40 16 24 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 26 H 0.08 2.55 5.89 -2.39 -0.01 2.54 16 27 H 0.06 2.75 7.13 -2.38 -0.02 2.73 16 28 H 0.02 1.23 6.93 -2.39 -0.02 1.21 16 29 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 30 H 0.16 5.63 8.06 -2.91 -0.02 5.61 16 31 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.16 -1.09 8.14 -2.39 -0.02 -1.10 16 35 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -91.27 308.76 3.88 -87.38 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 1.04 Total: 0.37 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 4.92 Total: 14.39 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -3.84 Total: -103.07 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -0.12 Total: -46.22 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -91.27 3.88 -87.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332081159.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.925 kcal (2) G-P(sol) polarization free energy of solvation -91.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds