Wall clock time and date at job start Mon Mar 30 2020 01:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47278 * 2 1 4 4 C 1.46498 * 119.99568 * 269.99443 * 3 2 1 5 5 C 1.34770 * 120.00251 * 89.99587 * 3 2 1 6 6 O 1.21364 * 119.99842 * 2.52006 * 5 3 2 7 7 C 1.49369 * 120.00217 * 182.51722 * 5 3 2 8 8 O 1.21353 * 119.99802 * 354.04760 * 7 5 3 9 9 N 1.34775 * 119.99909 * 174.05329 * 7 5 3 10 10 C 1.39115 * 119.99659 * 183.06139 * 9 7 5 11 11 C 1.39706 * 119.58190 * 341.10472 * 10 9 7 12 12 C 1.38651 * 119.49400 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.67036 * 359.72210 * 12 11 10 14 14 C 1.40590 * 119.13476 * 0.53501 * 13 12 11 15 15 C 1.41340 * 119.78572 * 179.72839 * 14 13 12 16 16 H 1.07997 * 119.99896 * 5.66247 * 15 14 13 17 17 C 1.40033 * 120.00110 * 185.66632 * 15 14 13 18 18 N 1.30745 * 119.99684 * 183.80835 * 17 15 14 19 19 Si 1.86792 * 119.99956 * 3.80021 * 17 15 14 20 20 H 1.48497 * 109.47290 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47503 * 300.00574 * 19 17 15 22 22 H 1.48501 * 109.47467 * 60.00451 * 19 17 15 23 23 N 1.31942 * 119.57787 * 161.11701 * 10 9 7 24 24 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47574 * 300.00773 * 1 2 3 26 26 H 1.09007 * 109.46805 * 60.00326 * 1 2 3 27 27 H 1.09002 * 109.47428 * 239.99209 * 2 1 3 28 28 H 1.09007 * 109.46805 * 119.99674 * 2 1 3 29 29 H 1.09004 * 109.47340 * 263.89156 * 4 3 2 30 30 H 1.08993 * 109.47576 * 23.89936 * 4 3 2 31 31 H 1.09006 * 109.47145 * 143.89518 * 4 3 2 32 32 H 0.96996 * 120.00085 * 3.06774 * 9 7 5 33 33 H 1.08003 * 120.24973 * 359.97438 * 11 10 9 34 34 H 1.07998 * 120.66560 * 180.02562 * 12 11 10 35 35 H 1.07999 * 120.42964 * 180.28577 * 13 12 11 36 36 H 0.96996 * 119.99925 * 354.92453 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0716 -1.2688 5 6 2.2429 2.0166 1.1671 6 8 2.0844 1.4299 2.2177 7 6 2.6869 3.4427 1.1677 8 8 2.9496 3.9969 0.1205 9 7 2.7959 4.1141 2.3313 10 6 3.1477 5.4600 2.3274 11 6 3.7627 6.0088 1.1994 12 6 4.1130 7.3503 1.1977 13 6 3.8351 8.1104 2.3198 14 6 3.2193 7.4985 3.4257 15 6 2.9343 8.2607 4.5813 16 1 3.1048 9.3271 4.5804 17 6 2.4310 7.6330 5.7275 18 7 2.0973 8.3471 6.7706 19 14 2.2361 5.7757 5.7659 20 1 1.6871 5.3627 7.0824 21 1 1.3065 5.3530 4.6878 22 1 3.5594 5.1347 5.5578 23 7 2.8965 6.2019 3.3892 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.3182 1.9916 -1.5287 30 1 1.6595 1.6146 -2.0532 31 1 1.9919 3.1228 -1.1684 32 1 2.6292 3.6588 3.1714 33 1 3.9644 5.3926 0.3357 34 1 4.5889 7.7943 0.3358 35 1 4.0915 9.1591 2.3474 36 1 2.2666 9.3022 6.7788 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333517464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:53 Heat of formation + Delta-G solvation = -41.869571 kcal Electronic energy + Delta-G solvation = -21339.303251 eV Core-core repulsion = 18016.328965 eV Total energy + Delta-G solvation = -3322.974286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38431 -40.79978 -39.53346 -37.48919 -36.23184 -35.38302 -33.04927 -32.21736 -31.51290 -28.06952 -27.48832 -26.46782 -24.32630 -23.67583 -22.41782 -21.14752 -20.26932 -19.24581 -18.52169 -17.77070 -17.51044 -17.02554 -16.90329 -16.33464 -15.78222 -15.57136 -15.40190 -14.78712 -14.70431 -14.59580 -14.27673 -14.17789 -13.84078 -13.59005 -13.40237 -12.90890 -12.83660 -12.72249 -12.28604 -12.21048 -11.97816 -11.82263 -11.66355 -11.20285 -10.50319 -10.32555 -9.91841 -9.73930 -9.42472 -9.22751 -6.85153 -0.08275 0.67415 0.80746 1.03167 1.55014 1.65407 1.95386 1.98370 2.26825 2.39936 2.62973 3.03127 3.50917 4.02582 4.05929 4.22323 4.25755 4.31449 4.52972 4.57450 4.60750 4.66943 4.73804 4.81448 4.93496 5.08946 5.20745 5.29579 5.32893 5.37154 5.38665 5.64092 5.69820 5.85768 5.90301 6.10816 6.34482 6.47101 6.62849 6.73175 7.43909 7.93434 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.005272 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.759762 B = 5310.123065 C = 6284.116818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.575 5.575 4 C 0.062 3.938 5 C 0.510 3.490 6 O -0.542 6.542 7 C 0.511 3.489 8 O -0.489 6.489 9 N -0.630 5.630 10 C 0.365 3.635 11 C -0.303 4.303 12 C -0.025 4.025 13 C -0.283 4.283 14 C 0.257 3.743 15 C -0.507 4.507 16 H 0.073 0.927 17 C 0.019 3.981 18 N -0.829 5.829 19 Si 1.180 2.820 20 H -0.329 1.329 21 H -0.282 1.282 22 H -0.294 1.294 23 N -0.615 5.615 24 H 0.091 0.909 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.419 0.581 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.119 0.881 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -15.345 -16.511 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.308 5.308 4 C -0.079 4.079 5 C 0.291 3.709 6 O -0.420 6.420 7 C 0.294 3.706 8 O -0.364 6.364 9 N -0.276 5.276 10 C 0.135 3.865 11 C -0.327 4.327 12 C -0.049 4.049 13 C -0.305 4.305 14 C 0.132 3.868 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.198 4.198 18 N -0.452 5.452 19 Si 1.014 2.986 20 H -0.263 1.263 21 H -0.210 1.210 22 H -0.222 1.222 23 N -0.341 5.341 24 H 0.109 0.891 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.256 0.744 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.137 0.863 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.251 -16.771 -15.106 22.606 hybrid contribution 0.807 2.280 -0.591 2.490 sum -0.444 -14.491 -15.698 21.368 Atomic orbital electron populations 1.22125 0.94758 1.03687 1.01807 1.21893 0.95252 0.79646 1.05049 1.47930 1.61881 1.15094 1.05882 1.22519 1.02919 0.99328 0.83172 1.19674 0.79719 0.86233 0.85259 1.90772 1.52243 1.67225 1.31806 1.20418 0.78795 0.88179 0.83226 1.90517 1.46469 1.68932 1.30454 1.43040 1.65132 1.08597 1.10808 1.18458 0.92700 0.83375 0.92004 1.22240 1.11773 0.97684 1.00975 1.21425 0.93667 0.92965 0.96818 1.21857 1.11579 1.00997 0.96108 1.18466 0.88183 0.86589 0.93553 1.20751 1.39698 0.96182 0.97342 0.90836 1.28355 0.88719 1.11959 0.90774 1.70656 1.33049 1.10476 1.31012 0.81480 0.77778 0.68167 0.71207 1.26259 1.20990 1.22210 1.65916 1.31137 1.08332 1.28676 0.89061 0.94752 0.91341 0.86155 0.90473 0.91069 0.87975 0.89521 0.74379 0.81562 0.82987 0.86287 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 71.98 0.74 -1.53 16 2 C 0.10 1.49 6.12 86.38 0.53 2.01 16 3 N -0.58 -11.71 2.87 -848.45 -2.44 -14.15 16 4 C 0.06 0.97 9.50 127.77 1.21 2.19 16 5 C 0.51 14.56 7.73 87.24 0.67 15.23 16 6 O -0.54 -17.96 16.05 -3.29 -0.05 -18.01 16 7 C 0.51 16.71 7.66 87.24 0.67 17.38 16 8 O -0.49 -15.65 9.76 -3.26 -0.03 -15.68 16 9 N -0.63 -24.36 5.40 -309.70 -1.67 -26.04 16 10 C 0.36 16.32 7.53 133.30 1.00 17.32 16 11 C -0.30 -12.27 8.92 22.72 0.20 -12.06 16 12 C -0.02 -0.96 10.15 22.40 0.23 -0.74 16 13 C -0.28 -12.84 9.83 22.87 0.22 -12.61 16 14 C 0.26 13.49 6.40 40.20 0.26 13.74 16 15 C -0.51 -28.34 9.57 23.47 0.22 -28.11 16 16 H 0.07 4.12 8.05 -2.91 -0.02 4.10 16 17 C 0.02 1.08 5.52 85.29 0.47 1.55 16 18 N -0.83 -46.69 13.65 21.84 0.30 -46.39 16 19 Si 1.18 59.13 25.59 68.60 1.76 60.89 16 20 H -0.33 -16.19 7.11 99.48 0.71 -15.48 16 21 H -0.28 -14.01 6.63 99.48 0.66 -13.35 16 22 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 23 N -0.61 -31.28 4.55 -186.43 -0.85 -32.13 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.12 0.91 8.07 -2.39 -0.02 0.89 16 28 H 0.08 1.34 7.39 -2.38 -0.02 1.33 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 0.92 8.03 -2.39 -0.02 0.90 16 31 H 0.09 1.79 5.44 -2.38 -0.01 1.78 16 32 H 0.42 16.00 8.30 -92.71 -0.77 15.23 16 33 H 0.17 6.16 5.05 -19.23 -0.10 6.06 16 34 H 0.15 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 36 H 0.28 15.31 8.72 -92.71 -0.81 14.50 16 Total: -1.00 -65.78 305.62 3.62 -62.16 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.18 Total: 14.98 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 6.43 Total: 14.37 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -4.66 Total: -118.71 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.08 Total: -33.69 kcal Atomic # 14 Polarization: 59.13 SS G_CDS: 1.76 Total: 60.89 kcal Total: -65.78 3.62 -62.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333517464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.292 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds