Wall clock time and date at job start Mon Mar 30 2020 01:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21292 * 119.99823 * 2 1 4 4 N 1.34775 * 120.00456 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00493 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46808 * 34.99457 * 5 4 2 7 7 C 1.53007 * 109.46959 * 274.99919 * 5 4 2 8 8 C 1.50695 * 109.47423 * 155.00031 * 5 4 2 9 9 O 1.21274 * 119.99721 * 8.58043 * 8 5 4 10 10 N 1.34778 * 120.00068 * 188.58334 * 8 5 4 11 11 C 1.37202 * 120.00104 * 3.05102 * 10 8 5 12 12 H 1.08009 * 119.99929 * 8.44049 * 11 10 8 13 13 C 1.38895 * 120.00284 * 188.45288 * 11 10 8 14 14 N 1.31417 * 119.99841 * 11.20007 * 13 11 10 15 15 Si 1.86799 * 120.00308 * 191.20544 * 13 11 10 16 16 H 1.48504 * 109.47256 * 89.99265 * 15 13 11 17 17 H 1.48498 * 109.47282 * 209.99740 * 15 13 11 18 18 H 1.48506 * 109.46977 * 329.99811 * 15 13 11 19 19 C 1.39434 * 119.99637 * 183.04175 * 10 8 5 20 20 C 1.39055 * 119.69884 * 264.02206 * 19 10 8 21 21 C 1.38383 * 119.09832 * 179.77136 * 20 19 10 22 22 C 1.38823 * 118.49094 * 0.52069 * 21 20 19 23 23 C 1.38152 * 119.30946 * 359.46023 * 22 21 20 24 24 N 1.31872 * 120.85342 * 0.29599 * 23 22 21 25 25 H 1.09002 * 109.47234 * 269.99734 * 1 2 3 26 26 H 1.09004 * 109.47424 * 30.00052 * 1 2 3 27 27 H 1.09005 * 109.47296 * 149.99882 * 1 2 3 28 28 H 0.97006 * 119.99341 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.47237 * 304.33635 * 7 5 4 30 30 H 1.09000 * 109.46970 * 64.33752 * 7 5 4 31 31 H 1.09000 * 109.46832 * 184.33227 * 7 5 4 32 32 H 0.96998 * 120.00086 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.45439 * 0.02562 * 20 19 10 34 34 H 1.08006 * 120.75605 * 180.28021 * 21 20 19 35 35 H 1.08000 * 120.34528 * 179.73277 * 22 21 20 36 36 H 1.07998 * 119.57024 * 180.27672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5883 7 6 4.1553 -1.0411 -1.4383 8 6 4.1485 -2.4549 0.5989 9 8 3.3716 -3.3531 0.8448 10 7 5.4614 -2.6085 0.8621 11 6 6.3311 -1.5703 0.6424 12 1 5.9508 -0.5914 0.3901 13 6 7.7006 -1.7782 0.7443 14 7 8.1750 -3.0007 0.8315 15 14 8.8683 -0.3202 0.7576 16 1 9.0833 0.1291 2.1566 17 1 10.1678 -0.7213 0.1611 18 1 8.2820 0.7908 -0.0345 19 6 5.9356 -3.8223 1.3578 20 6 6.1071 -3.9872 2.7279 21 6 6.5740 -5.1987 3.2067 22 6 6.8647 -6.2037 2.2943 23 6 6.6703 -5.9705 0.9465 24 7 6.2191 -4.8072 0.5197 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6959 -2.0072 -0.0005 29 1 3.7297 -1.8396 -2.0460 30 1 3.8567 -0.0755 -1.8463 31 1 5.2425 -1.1184 -1.4465 32 1 9.1313 -3.1459 0.9031 33 1 5.8751 -3.1821 3.4094 34 1 6.7127 -5.3574 4.2660 35 1 7.2349 -7.1594 2.6348 36 1 6.8908 -6.7509 0.2333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334231440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:29 Heat of formation + Delta-G solvation = -18.092274 kcal Electronic energy + Delta-G solvation = -21927.444846 eV Core-core repulsion = 18605.501621 eV Total energy + Delta-G solvation = -3321.943225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02234 -39.17597 -37.89288 -35.11815 -34.32264 -31.86025 -31.41555 -31.14994 -29.38240 -28.29281 -25.23710 -24.08315 -22.50650 -22.05261 -20.11396 -19.42038 -18.34139 -17.13214 -15.83866 -15.55319 -15.52174 -15.34261 -14.95537 -14.81260 -14.30672 -13.79566 -13.68716 -13.22985 -12.85782 -12.54357 -12.43405 -12.34662 -12.19676 -11.81031 -11.77826 -11.48093 -11.21503 -11.16286 -10.93542 -10.60735 -10.45558 -9.78405 -9.59769 -8.94569 -8.84949 -8.65122 -8.54832 -8.11030 -7.87765 -6.44234 -4.14428 2.19844 2.35578 2.92575 3.03691 3.14960 3.17387 3.48277 3.53275 3.95882 4.40164 4.85836 4.96833 5.07037 5.32098 5.47068 5.49919 5.60316 5.68907 5.82790 5.83916 5.89415 5.93401 6.16865 6.25846 6.38895 6.43774 6.62957 6.75680 6.89345 7.00376 7.03833 7.23095 7.32645 7.72546 7.90687 8.20241 8.55148 8.83960 9.12104 9.21031 9.57753 10.49409 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.007066 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.522688 B = 3961.679951 C = 5186.774644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.556 6.556 4 N -0.709 5.709 5 C 0.143 3.857 6 H 0.106 0.894 7 C -0.156 4.156 8 C 0.469 3.531 9 O -0.594 6.594 10 N -0.399 5.399 11 C -0.347 4.347 12 H 0.114 0.886 13 C 0.040 3.960 14 N -0.852 5.852 15 Si 0.929 3.071 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.458 3.542 20 C -0.162 4.162 21 C -0.075 4.075 22 C -0.207 4.207 23 C 0.117 3.883 24 N -0.465 5.465 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.407 0.593 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.274 0.726 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 -0.561 0.787 5.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.295 3.705 3 O -0.434 6.434 4 N -0.362 5.362 5 C 0.035 3.965 6 H 0.124 0.876 7 C -0.214 4.214 8 C 0.257 3.743 9 O -0.479 6.479 10 N -0.116 5.116 11 C -0.473 4.473 12 H 0.132 0.868 13 C -0.166 4.166 14 N -0.488 5.488 15 Si 0.755 3.245 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.190 1.190 19 C 0.232 3.768 20 C -0.184 4.184 21 C -0.101 4.101 22 C -0.228 4.228 23 C -0.042 4.042 24 N -0.176 5.176 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.243 0.757 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.600 -0.208 0.018 5.604 hybrid contribution 0.936 0.079 0.925 1.319 sum -4.664 -0.129 0.944 4.760 Atomic orbital electron populations 1.21849 0.92078 1.04482 1.04539 1.20728 0.90434 0.83526 0.75832 1.90702 1.70783 1.31437 1.50505 1.45984 1.06972 1.09167 1.74068 1.20505 0.79880 0.97651 0.98455 0.87621 1.22076 1.04060 1.01323 0.93947 1.19964 0.82310 0.89290 0.82697 1.90549 1.55488 1.43808 1.58055 1.41137 1.05709 1.09360 1.55420 1.19824 0.87063 0.89727 1.50722 0.86822 1.25284 0.97789 0.97702 0.95874 1.69630 1.14547 1.19223 1.45359 0.85872 0.79296 0.80580 0.78780 1.20093 1.20744 1.18970 1.17412 0.87114 0.85009 0.87249 1.21676 1.02976 0.97791 0.95973 1.21099 0.97121 0.93030 0.98888 1.21719 1.06154 0.99830 0.95064 1.22139 0.95289 0.93460 0.93326 1.67111 1.10485 1.00239 1.39760 0.89079 0.89193 0.90294 0.75657 0.92843 0.92303 0.88849 0.91383 0.86573 0.86478 0.86568 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.30 36.00 0.37 -1.43 16 2 C 0.51 8.20 7.90 -10.99 -0.09 8.11 16 3 O -0.56 -11.09 16.76 5.55 0.09 -10.99 16 4 N -0.71 -12.19 5.00 -54.93 -0.27 -12.46 16 5 C 0.14 2.87 2.14 -69.08 -0.15 2.73 16 6 H 0.11 2.23 6.62 -51.93 -0.34 1.89 16 7 C -0.16 -2.93 9.16 37.16 0.34 -2.59 16 8 C 0.47 11.05 6.97 -10.99 -0.08 10.98 16 9 O -0.59 -14.96 15.80 5.56 0.09 -14.87 16 10 N -0.40 -9.96 2.74 -60.71 -0.17 -10.12 16 11 C -0.35 -8.52 7.89 -14.90 -0.12 -8.63 16 12 H 0.11 2.62 5.54 -52.48 -0.29 2.33 16 13 C 0.04 0.99 5.35 -17.49 -0.09 0.90 16 14 N -0.85 -21.89 10.16 55.49 0.56 -21.33 16 15 Si 0.93 19.27 29.57 -169.99 -5.03 14.25 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 C 0.46 11.49 2.92 -154.63 -0.45 11.03 16 20 C -0.16 -3.68 9.73 -39.23 -0.38 -4.06 16 21 C -0.07 -1.45 10.17 -39.31 -0.40 -1.85 16 22 C -0.21 -3.83 10.11 -39.40 -0.40 -4.23 16 23 C 0.12 2.43 11.18 -17.57 -0.20 2.24 16 24 N -0.46 -11.56 9.62 -12.34 -0.12 -11.68 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.41 6.57 7.72 -40.82 -0.32 6.25 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.89 6.10 -51.93 -0.32 1.58 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 34 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -31.54 312.03 -5.98 -37.53 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.21 Total: 11.79 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -1.64 Total: 13.19 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.00 Total: -55.59 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.18 Total: -25.86 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.54 -5.98 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334231440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.434 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds