Wall clock time and date at job start Mon Mar 30 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21292 * 119.99823 * 2 1 4 4 N 1.34775 * 120.00456 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00493 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46808 * 34.99457 * 5 4 2 7 7 C 1.53007 * 109.46959 * 274.99919 * 5 4 2 8 8 C 1.50695 * 109.47423 * 155.00031 * 5 4 2 9 9 O 1.21274 * 119.99721 * 8.58043 * 8 5 4 10 10 N 1.34778 * 120.00068 * 188.58334 * 8 5 4 11 11 C 1.37202 * 120.00104 * 3.05102 * 10 8 5 12 12 H 1.08009 * 119.99929 * 8.44049 * 11 10 8 13 13 C 1.38895 * 120.00284 * 188.45288 * 11 10 8 14 14 N 1.31417 * 119.99841 * 11.20007 * 13 11 10 15 15 Si 1.86799 * 120.00308 * 191.20544 * 13 11 10 16 16 H 1.48504 * 109.47256 * 89.99265 * 15 13 11 17 17 H 1.48498 * 109.47282 * 209.99740 * 15 13 11 18 18 H 1.48506 * 109.46977 * 329.99811 * 15 13 11 19 19 C 1.39434 * 119.99637 * 183.04175 * 10 8 5 20 20 C 1.39055 * 119.69884 * 264.02206 * 19 10 8 21 21 C 1.38383 * 119.09832 * 179.77136 * 20 19 10 22 22 C 1.38823 * 118.49094 * 0.52069 * 21 20 19 23 23 C 1.38152 * 119.30946 * 359.46023 * 22 21 20 24 24 N 1.31872 * 120.85342 * 0.29599 * 23 22 21 25 25 H 1.09002 * 109.47234 * 269.99734 * 1 2 3 26 26 H 1.09004 * 109.47424 * 30.00052 * 1 2 3 27 27 H 1.09005 * 109.47296 * 149.99882 * 1 2 3 28 28 H 0.97006 * 119.99341 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.47237 * 304.33635 * 7 5 4 30 30 H 1.09000 * 109.46970 * 64.33752 * 7 5 4 31 31 H 1.09000 * 109.46832 * 184.33227 * 7 5 4 32 32 H 0.96998 * 120.00086 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.45439 * 0.02562 * 20 19 10 34 34 H 1.08006 * 120.75605 * 180.28021 * 21 20 19 35 35 H 1.08000 * 120.34528 * 179.73277 * 22 21 20 36 36 H 1.07998 * 119.57024 * 180.27672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5883 7 6 4.1553 -1.0411 -1.4383 8 6 4.1485 -2.4549 0.5989 9 8 3.3716 -3.3531 0.8448 10 7 5.4614 -2.6085 0.8621 11 6 6.3311 -1.5703 0.6424 12 1 5.9508 -0.5914 0.3901 13 6 7.7006 -1.7782 0.7443 14 7 8.1750 -3.0007 0.8315 15 14 8.8683 -0.3202 0.7576 16 1 9.0833 0.1291 2.1566 17 1 10.1678 -0.7213 0.1611 18 1 8.2820 0.7908 -0.0345 19 6 5.9356 -3.8223 1.3578 20 6 6.1071 -3.9872 2.7279 21 6 6.5740 -5.1987 3.2067 22 6 6.8647 -6.2037 2.2943 23 6 6.6703 -5.9705 0.9465 24 7 6.2191 -4.8072 0.5197 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6959 -2.0072 -0.0005 29 1 3.7297 -1.8396 -2.0460 30 1 3.8567 -0.0755 -1.8463 31 1 5.2425 -1.1184 -1.4465 32 1 9.1313 -3.1459 0.9031 33 1 5.8751 -3.1821 3.4094 34 1 6.7127 -5.3574 4.2660 35 1 7.2349 -7.1594 2.6348 36 1 6.8908 -6.7509 0.2333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334231440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:28 Heat of formation + Delta-G solvation = -40.113690 kcal Electronic energy + Delta-G solvation = -21928.399766 eV Core-core repulsion = 18605.501621 eV Total energy + Delta-G solvation = -3322.898145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70476 -40.64905 -39.53416 -36.89874 -35.89280 -33.70722 -33.01887 -32.57876 -30.86435 -29.56288 -27.10161 -25.71731 -24.12232 -23.64011 -21.53400 -21.15858 -20.04072 -18.64101 -17.36025 -17.20935 -17.15805 -17.02970 -16.48846 -16.22963 -15.98499 -15.47123 -15.22168 -14.71685 -14.51063 -14.12533 -13.84505 -13.73912 -13.51681 -13.29183 -13.12049 -13.03195 -12.86440 -12.73020 -12.52755 -12.39792 -12.10868 -11.57895 -10.96725 -10.69596 -10.48425 -10.36774 -10.14969 -9.82915 -9.58021 -8.26742 -6.04109 0.56855 0.76279 1.34624 1.43802 1.54323 1.64527 1.75885 2.04110 2.29400 2.75379 3.06936 3.25459 3.78846 3.98154 4.08746 4.18425 4.21694 4.24155 4.49976 4.55153 4.57017 4.67702 4.70041 4.78928 4.84994 5.04132 5.10474 5.21069 5.29183 5.40048 5.44871 5.46690 5.64276 6.03768 6.38268 6.60268 6.96680 7.23059 7.34707 7.50352 7.76290 8.63835 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.007066 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.522688 B = 3961.679951 C = 5186.774644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.504 3.496 3 O -0.598 6.598 4 N -0.707 5.707 5 C 0.151 3.849 6 H 0.092 0.908 7 C -0.143 4.143 8 C 0.459 3.541 9 O -0.618 6.618 10 N -0.409 5.409 11 C -0.360 4.360 12 H 0.119 0.881 13 C 0.001 3.999 14 N -0.872 5.872 15 Si 0.991 3.009 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.258 1.258 19 C 0.425 3.575 20 C -0.189 4.189 21 C -0.070 4.070 22 C -0.193 4.193 23 C 0.100 3.900 24 N -0.506 5.506 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.413 0.587 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.271 0.729 33 H 0.109 0.891 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -1.050 1.270 6.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.293 3.707 3 O -0.479 6.479 4 N -0.360 5.360 5 C 0.042 3.958 6 H 0.110 0.890 7 C -0.201 4.201 8 C 0.249 3.751 9 O -0.505 6.505 10 N -0.126 5.126 11 C -0.486 4.486 12 H 0.137 0.863 13 C -0.203 4.203 14 N -0.508 5.508 15 Si 0.814 3.186 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.182 1.182 19 C 0.200 3.800 20 C -0.211 4.211 21 C -0.096 4.096 22 C -0.213 4.213 23 C -0.059 4.059 24 N -0.218 5.218 25 H 0.128 0.872 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.251 0.749 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.927 -0.706 0.502 5.990 hybrid contribution 1.023 0.114 0.803 1.306 sum -4.903 -0.593 1.305 5.109 Atomic orbital electron populations 1.21882 0.87158 1.06413 1.06299 1.21773 0.92604 0.82208 0.74087 1.90682 1.72163 1.32712 1.52333 1.46016 1.05621 1.10126 1.74274 1.20284 0.81885 0.95189 0.98443 0.89032 1.21944 1.02805 1.02060 0.93338 1.20537 0.82038 0.90166 0.82388 1.90501 1.55916 1.44941 1.59125 1.41384 1.06155 1.09789 1.55245 1.20102 0.87515 0.90079 1.50901 0.86342 1.26073 0.98915 0.99930 0.95421 1.69810 1.14292 1.20754 1.45951 0.84941 0.77085 0.77870 0.78696 1.19870 1.20882 1.18204 1.17714 0.88736 0.85298 0.88236 1.21817 1.04671 0.99418 0.95223 1.21592 0.95170 0.91678 1.01184 1.22192 1.03906 1.01334 0.93842 1.22783 0.94691 0.92979 0.95430 1.67048 1.12141 1.01657 1.40936 0.87206 0.87896 0.87733 0.74939 0.92442 0.91091 0.90605 0.91862 0.87252 0.82498 0.81820 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.30 71.23 0.73 -2.21 16 2 C 0.50 15.79 7.90 87.66 0.69 16.48 16 3 O -0.60 -23.74 16.76 -3.07 -0.05 -23.80 16 4 N -0.71 -24.18 5.00 -446.10 -2.23 -26.41 16 5 C 0.15 6.20 2.14 44.25 0.09 6.29 16 6 H 0.09 4.01 6.62 -2.39 -0.02 4.00 16 7 C -0.14 -5.47 9.16 71.98 0.66 -4.81 16 8 C 0.46 22.32 6.97 87.66 0.61 22.93 16 9 O -0.62 -31.95 15.80 -3.01 -0.05 -31.99 16 10 N -0.41 -21.07 2.74 -464.38 -1.27 -22.34 16 11 C -0.36 -18.15 7.89 84.01 0.66 -17.48 16 12 H 0.12 5.65 5.54 -2.91 -0.02 5.63 16 13 C 0.00 0.04 5.35 84.91 0.45 0.49 16 14 N -0.87 -45.41 10.16 21.65 0.22 -45.19 16 15 Si 0.99 39.85 29.57 68.60 2.03 41.88 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 19 C 0.43 21.76 2.92 132.90 0.39 22.15 16 20 C -0.19 -8.66 9.73 22.50 0.22 -8.44 16 21 C -0.07 -2.57 10.17 22.44 0.23 -2.34 16 22 C -0.19 -6.59 10.11 22.39 0.23 -6.37 16 23 C 0.10 4.04 11.18 84.67 0.95 4.98 16 24 N -0.51 -25.46 9.62 -192.96 -1.86 -27.32 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.41 13.15 7.72 -92.70 -0.72 12.44 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 3.17 6.10 -2.39 -0.01 3.15 16 32 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 33 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 35 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.16 5.41 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -70.61 312.03 3.11 -67.50 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: 0.40 Total: 35.99 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: 5.92 Total: 31.68 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -5.14 Total: -121.25 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.10 Total: -55.79 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -70.61 3.11 -67.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334231440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.385 kcal (2) G-P(sol) polarization free energy of solvation -70.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds