Wall clock time and date at job start Mon Mar 30 2020 01:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 120.00398 * 2 1 4 4 N 1.34776 * 119.99292 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99531 * 180.02562 * 4 2 1 6 6 H 1.09003 * 109.47439 * 325.00089 * 5 4 2 7 7 C 1.52997 * 109.47101 * 85.00345 * 5 4 2 8 8 C 1.50702 * 109.47096 * 205.00393 * 5 4 2 9 9 O 1.21270 * 120.00007 * 339.77071 * 8 5 4 10 10 N 1.34782 * 120.00056 * 159.77425 * 8 5 4 11 11 C 1.37212 * 119.99852 * 4.90853 * 10 8 5 12 12 H 1.08004 * 120.00338 * 305.42590 * 11 10 8 13 13 C 1.38894 * 119.99513 * 125.42040 * 11 10 8 14 14 N 1.31412 * 120.00411 * 343.03176 * 13 11 10 15 15 Si 1.86800 * 119.99712 * 163.03118 * 13 11 10 16 16 H 1.48498 * 109.47182 * 90.00581 * 15 13 11 17 17 H 1.48505 * 109.47097 * 209.99915 * 15 13 11 18 18 H 1.48503 * 109.47448 * 330.00069 * 15 13 11 19 19 C 1.39426 * 119.99898 * 184.91596 * 10 8 5 20 20 C 1.39060 * 119.69272 * 185.02116 * 19 10 8 21 21 C 1.38386 * 119.09817 * 179.74396 * 20 19 10 22 22 C 1.38834 * 118.48850 * 0.47446 * 21 20 19 23 23 C 1.38151 * 119.31028 * 359.52240 * 22 21 20 24 24 N 1.31873 * 120.85073 * 0.23614 * 23 22 21 25 25 H 1.09003 * 109.47355 * 270.00960 * 1 2 3 26 26 H 1.09005 * 109.47018 * 30.00157 * 1 2 3 27 27 H 1.08993 * 109.47264 * 150.00108 * 1 2 3 28 28 H 0.97000 * 120.00690 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.47307 * 293.55505 * 7 5 4 30 30 H 1.08999 * 109.47431 * 53.56074 * 7 5 4 31 31 H 1.09009 * 109.46992 * 173.55858 * 7 5 4 32 32 H 0.96994 * 119.99957 * 175.12404 * 14 13 11 33 33 H 1.07998 * 120.45835 * 359.97438 * 20 19 10 34 34 H 1.08000 * 120.75823 * 180.27381 * 21 20 19 35 35 H 1.08000 * 120.34243 * 179.80255 * 22 21 20 36 36 H 1.08000 * 119.57181 * 180.25521 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1807 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0094 -0.3257 -0.5884 7 6 4.1552 -1.0414 1.4382 8 6 4.1483 -2.4552 -0.5990 9 8 3.4213 -3.4244 -0.6504 10 7 5.4057 -2.5297 -1.0784 11 6 6.2607 -1.4669 -0.9299 12 1 5.9710 -0.4875 -1.2811 13 6 7.4988 -1.6506 -0.3276 14 7 7.7271 -2.7275 0.3900 15 14 8.8393 -0.3668 -0.5378 16 1 8.7369 0.6385 0.5504 17 1 10.1690 -1.0254 -0.4796 18 1 8.6778 0.3072 -1.8512 19 6 5.8376 -3.6867 -1.7255 20 6 7.1650 -3.7981 -2.1247 21 6 7.5817 -4.9541 -2.7612 22 6 6.6501 -5.9587 -2.9863 23 6 5.3474 -5.7802 -2.5626 24 7 4.9803 -4.6694 -1.9539 25 1 -0.3634 0.0002 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6957 -2.0073 0.0005 29 1 3.8890 -0.0611 1.8335 30 1 3.7006 -1.8173 2.0542 31 1 5.2392 -1.1561 1.4509 32 1 8.6122 -2.8907 0.7516 33 1 7.8623 -2.9950 -1.9372 34 1 8.6073 -5.0709 -3.0786 35 1 6.9420 -6.8720 -3.4833 36 1 4.6202 -6.5606 -2.7318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334231441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:32 Heat of formation + Delta-G solvation = -16.151385 kcal Electronic energy + Delta-G solvation = -21948.910250 eV Core-core repulsion = 18627.051189 eV Total energy + Delta-G solvation = -3321.859062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08911 -39.20580 -37.90832 -35.27145 -34.33365 -32.24817 -31.28420 -31.02019 -29.32140 -28.30437 -25.40841 -24.11528 -22.50512 -21.84870 -20.08774 -19.43666 -18.25358 -17.05102 -15.81198 -15.71371 -15.53755 -15.14411 -14.91522 -14.73984 -14.20415 -14.05724 -13.64047 -13.21476 -13.06259 -12.71723 -12.51709 -12.24585 -12.16425 -11.85693 -11.76427 -11.50803 -11.37942 -11.18748 -10.87737 -10.78342 -10.52052 -9.59252 -9.46756 -9.15315 -8.89050 -8.81950 -8.70772 -8.00633 -7.11149 -6.53321 -4.61585 2.09636 2.30303 2.93355 3.00265 3.10651 3.14309 3.45842 3.67985 3.94181 4.33695 4.61098 5.03125 5.08417 5.32243 5.37764 5.47307 5.61420 5.70755 5.87244 5.89144 5.93705 5.94769 6.22327 6.25683 6.41192 6.46915 6.72723 6.78410 6.94799 7.00901 7.12261 7.20839 7.44334 7.87897 7.92834 8.08909 8.55274 8.73975 8.78162 9.18765 9.65416 10.36646 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.007464 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.474161 B = 3750.287962 C = 5186.231255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.554 6.554 4 N -0.713 5.713 5 C 0.141 3.859 6 H 0.110 0.890 7 C -0.146 4.146 8 C 0.496 3.504 9 O -0.523 6.523 10 N -0.379 5.379 11 C -0.372 4.372 12 H 0.099 0.901 13 C 0.061 3.939 14 N -0.836 5.836 15 Si 0.907 3.093 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.263 1.263 19 C 0.383 3.617 20 C -0.158 4.158 21 C -0.076 4.076 22 C -0.235 4.235 23 C 0.109 3.891 24 N -0.495 5.495 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.406 0.594 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.276 0.724 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 -0.009 -1.726 4.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.295 3.705 3 O -0.432 6.432 4 N -0.367 5.367 5 C 0.033 3.967 6 H 0.127 0.873 7 C -0.205 4.205 8 C 0.284 3.716 9 O -0.399 6.399 10 N -0.091 5.091 11 C -0.499 4.499 12 H 0.116 0.884 13 C -0.150 4.150 14 N -0.467 5.467 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.187 1.187 19 C 0.152 3.848 20 C -0.182 4.182 21 C -0.102 4.102 22 C -0.258 4.258 23 C -0.050 4.050 24 N -0.211 5.211 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.242 0.758 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.132 0.359 -1.221 5.287 hybrid contribution 1.627 -0.119 -0.221 1.646 sum -3.505 0.240 -1.442 3.798 Atomic orbital electron populations 1.21855 0.92088 1.04606 1.04452 1.20717 0.90412 0.83519 0.75822 1.90701 1.70768 1.31416 1.50334 1.46063 1.07123 1.09180 1.74298 1.20584 0.79407 0.97778 0.98896 0.87265 1.21943 1.03929 1.01098 0.93488 1.20820 0.83182 0.89162 0.78391 1.90635 1.56419 1.37534 1.55296 1.40973 1.10460 1.12055 1.45566 1.19311 0.99287 0.89178 1.42136 0.88365 1.25551 0.99668 0.97289 0.92455 1.70068 1.23039 1.27036 1.26587 0.86253 0.79876 0.80882 0.79848 1.19458 1.20267 1.18660 1.18936 0.89158 0.87519 0.89140 1.21702 0.96174 0.99438 1.00848 1.21229 0.98794 0.93358 0.96860 1.21695 0.95509 1.00651 1.07902 1.22321 0.94125 0.94263 0.94251 1.67611 1.36779 1.00995 1.15708 0.89121 0.89160 0.90244 0.75761 0.92358 0.93169 0.88918 0.91359 0.84163 0.86392 0.86659 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.30 36.01 0.37 -1.47 16 2 C 0.51 8.30 7.90 -10.99 -0.09 8.21 16 3 O -0.55 -11.17 16.76 5.56 0.09 -11.08 16 4 N -0.71 -12.39 5.04 -54.93 -0.28 -12.66 16 5 C 0.14 2.89 2.27 -69.08 -0.16 2.73 16 6 H 0.11 2.36 6.47 -51.93 -0.34 2.03 16 7 C -0.15 -2.87 9.39 37.16 0.35 -2.52 16 8 C 0.50 11.83 6.85 -10.98 -0.08 11.75 16 9 O -0.52 -13.19 14.22 5.57 0.08 -13.11 16 10 N -0.38 -9.43 2.61 -60.71 -0.16 -9.59 16 11 C -0.37 -8.90 6.56 -14.90 -0.10 -9.00 16 12 H 0.10 2.28 7.15 -52.48 -0.38 1.91 16 13 C 0.06 1.42 3.17 -17.49 -0.06 1.37 16 14 N -0.84 -20.76 11.95 55.49 0.66 -20.09 16 15 Si 0.91 18.04 29.49 -169.99 -5.01 13.02 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 19 C 0.38 9.56 6.91 -154.64 -1.07 8.49 16 20 C -0.16 -3.60 8.06 -39.22 -0.32 -3.92 16 21 C -0.08 -1.48 10.17 -39.31 -0.40 -1.88 16 22 C -0.24 -4.27 10.11 -39.39 -0.40 -4.67 16 23 C 0.11 2.20 11.18 -17.57 -0.20 2.01 16 24 N -0.50 -12.06 7.92 -12.34 -0.10 -12.16 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.41 6.57 7.74 -40.82 -0.32 6.26 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 2.01 7.06 -51.92 -0.37 1.65 16 32 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.14 3.26 5.08 -52.49 -0.27 2.99 16 34 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.14 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -30.43 308.88 -6.37 -36.79 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.18 Total: 13.12 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -2.13 Total: 11.11 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.13 Total: -54.50 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.17 Total: -24.19 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.01 Total: 13.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.43 -6.37 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334231441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.641 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds