Wall clock time and date at job start Mon Mar 30 2020 01:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 120.00398 * 2 1 4 4 N 1.34776 * 119.99292 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99531 * 180.02562 * 4 2 1 6 6 H 1.09003 * 109.47439 * 325.00089 * 5 4 2 7 7 C 1.52997 * 109.47101 * 85.00345 * 5 4 2 8 8 C 1.50702 * 109.47096 * 205.00393 * 5 4 2 9 9 O 1.21270 * 120.00007 * 339.77071 * 8 5 4 10 10 N 1.34782 * 120.00056 * 159.77425 * 8 5 4 11 11 C 1.37212 * 119.99852 * 4.90853 * 10 8 5 12 12 H 1.08004 * 120.00338 * 305.42590 * 11 10 8 13 13 C 1.38894 * 119.99513 * 125.42040 * 11 10 8 14 14 N 1.31412 * 120.00411 * 343.03176 * 13 11 10 15 15 Si 1.86800 * 119.99712 * 163.03118 * 13 11 10 16 16 H 1.48498 * 109.47182 * 90.00581 * 15 13 11 17 17 H 1.48505 * 109.47097 * 209.99915 * 15 13 11 18 18 H 1.48503 * 109.47448 * 330.00069 * 15 13 11 19 19 C 1.39426 * 119.99898 * 184.91596 * 10 8 5 20 20 C 1.39060 * 119.69272 * 185.02116 * 19 10 8 21 21 C 1.38386 * 119.09817 * 179.74396 * 20 19 10 22 22 C 1.38834 * 118.48850 * 0.47446 * 21 20 19 23 23 C 1.38151 * 119.31028 * 359.52240 * 22 21 20 24 24 N 1.31873 * 120.85073 * 0.23614 * 23 22 21 25 25 H 1.09003 * 109.47355 * 270.00960 * 1 2 3 26 26 H 1.09005 * 109.47018 * 30.00157 * 1 2 3 27 27 H 1.08993 * 109.47264 * 150.00108 * 1 2 3 28 28 H 0.97000 * 120.00690 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.47307 * 293.55505 * 7 5 4 30 30 H 1.08999 * 109.47431 * 53.56074 * 7 5 4 31 31 H 1.09009 * 109.46992 * 173.55858 * 7 5 4 32 32 H 0.96994 * 119.99957 * 175.12404 * 14 13 11 33 33 H 1.07998 * 120.45835 * 359.97438 * 20 19 10 34 34 H 1.08000 * 120.75823 * 180.27381 * 21 20 19 35 35 H 1.08000 * 120.34243 * 179.80255 * 22 21 20 36 36 H 1.08000 * 119.57181 * 180.25521 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1807 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0094 -0.3257 -0.5884 7 6 4.1552 -1.0414 1.4382 8 6 4.1483 -2.4552 -0.5990 9 8 3.4213 -3.4244 -0.6504 10 7 5.4057 -2.5297 -1.0784 11 6 6.2607 -1.4669 -0.9299 12 1 5.9710 -0.4875 -1.2811 13 6 7.4988 -1.6506 -0.3276 14 7 7.7271 -2.7275 0.3900 15 14 8.8393 -0.3668 -0.5378 16 1 8.7369 0.6385 0.5504 17 1 10.1690 -1.0254 -0.4796 18 1 8.6778 0.3072 -1.8512 19 6 5.8376 -3.6867 -1.7255 20 6 7.1650 -3.7981 -2.1247 21 6 7.5817 -4.9541 -2.7612 22 6 6.6501 -5.9587 -2.9863 23 6 5.3474 -5.7802 -2.5626 24 7 4.9803 -4.6694 -1.9539 25 1 -0.3634 0.0002 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6957 -2.0073 0.0005 29 1 3.8890 -0.0611 1.8335 30 1 3.7006 -1.8173 2.0542 31 1 5.2392 -1.1561 1.4509 32 1 8.6122 -2.8907 0.7516 33 1 7.8623 -2.9950 -1.9372 34 1 8.6073 -5.0709 -3.0786 35 1 6.9420 -6.8720 -3.4833 36 1 4.6202 -6.5606 -2.7318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334231441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:31 Heat of formation + Delta-G solvation = -36.212962 kcal Electronic energy + Delta-G solvation = -21949.780186 eV Core-core repulsion = 18627.051189 eV Total energy + Delta-G solvation = -3322.728997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77434 -40.68542 -39.54790 -37.03193 -35.90684 -34.02114 -32.86528 -32.51648 -30.82299 -29.59018 -27.22894 -25.76957 -24.11288 -23.45250 -21.51157 -21.16336 -19.92795 -18.56414 -17.52637 -17.24075 -17.14438 -16.75521 -16.33657 -16.31405 -15.86124 -15.71985 -15.18179 -14.75824 -14.66845 -14.34953 -13.74084 -13.72680 -13.55702 -13.36474 -13.17834 -13.05553 -12.96128 -12.88387 -12.50804 -12.35130 -12.10814 -11.20105 -10.98319 -10.87818 -10.62045 -10.49711 -10.21577 -9.71353 -8.86258 -8.30112 -6.46553 0.45379 0.69428 1.40193 1.46009 1.56982 1.63290 1.91707 2.02732 2.31045 2.71208 2.85450 3.35680 3.70276 3.92137 4.11913 4.19293 4.20864 4.27876 4.51650 4.53728 4.59218 4.68987 4.69616 4.77621 4.84221 5.09414 5.13651 5.20099 5.32218 5.38153 5.43609 5.55233 5.84910 6.13151 6.30562 6.57922 6.93732 7.06152 7.23610 7.42226 7.89171 8.59358 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.007464 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.474161 B = 3750.287962 C = 5186.231255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.504 3.496 3 O -0.597 6.597 4 N -0.710 5.710 5 C 0.150 3.850 6 H 0.093 0.907 7 C -0.132 4.132 8 C 0.484 3.516 9 O -0.547 6.547 10 N -0.391 5.391 11 C -0.384 4.384 12 H 0.095 0.905 13 C 0.036 3.964 14 N -0.867 5.867 15 Si 0.968 3.032 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.259 1.259 19 C 0.344 3.656 20 C -0.179 4.179 21 C -0.074 4.074 22 C -0.214 4.214 23 C 0.094 3.906 24 N -0.530 5.530 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.413 0.587 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.277 0.723 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 -0.814 -2.466 5.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.293 3.707 3 O -0.478 6.478 4 N -0.364 5.364 5 C 0.042 3.958 6 H 0.111 0.889 7 C -0.190 4.190 8 C 0.273 3.727 9 O -0.425 6.425 10 N -0.104 5.104 11 C -0.510 4.510 12 H 0.113 0.887 13 C -0.172 4.172 14 N -0.500 5.500 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.196 1.196 18 H -0.183 1.183 19 C 0.115 3.885 20 C -0.203 4.203 21 C -0.100 4.100 22 C -0.235 4.235 23 C -0.064 4.064 24 N -0.247 5.247 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.250 0.750 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.122 -0.462 -1.975 5.509 hybrid contribution 1.610 -0.001 -0.069 1.611 sum -3.512 -0.463 -2.044 4.090 Atomic orbital electron populations 1.21885 0.87072 1.06235 1.06536 1.21786 0.92617 0.82191 0.74056 1.90680 1.72169 1.32723 1.52204 1.46078 1.05681 1.10181 1.74483 1.20312 0.81498 0.95449 0.98565 0.88945 1.21783 1.02237 1.01787 0.93240 1.21350 0.83102 0.89976 0.78262 1.90583 1.56910 1.38524 1.56494 1.41190 1.10844 1.12482 1.45854 1.19441 0.99855 0.89143 1.42590 0.88736 1.26173 1.00893 0.98661 0.91499 1.70151 1.23459 1.28798 1.27549 0.85350 0.77467 0.78565 0.79686 1.19428 1.19567 1.18315 1.19269 0.90312 0.88030 0.90855 1.21759 0.95321 1.00801 1.02373 1.21708 1.00856 0.92124 0.95266 1.22168 0.94098 1.01600 1.05671 1.22998 0.96137 0.93772 0.93532 1.67564 1.37825 1.02211 1.17076 0.86626 0.88077 0.88031 0.74953 0.91237 0.92713 0.91347 0.91262 0.85326 0.82734 0.81859 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.30 71.24 0.73 -2.28 16 2 C 0.50 16.15 7.90 87.66 0.69 16.85 16 3 O -0.60 -24.23 16.76 -3.02 -0.05 -24.28 16 4 N -0.71 -24.83 5.04 -446.10 -2.25 -27.08 16 5 C 0.15 6.38 2.27 44.24 0.10 6.48 16 6 H 0.09 4.21 6.47 -2.39 -0.02 4.20 16 7 C -0.13 -5.34 9.39 71.98 0.68 -4.67 16 8 C 0.48 23.97 6.85 87.66 0.60 24.57 16 9 O -0.55 -28.46 14.22 -3.00 -0.04 -28.51 16 10 N -0.39 -20.25 2.61 -464.37 -1.21 -21.46 16 11 C -0.38 -19.05 6.56 84.01 0.55 -18.50 16 12 H 0.10 4.61 7.15 -2.91 -0.02 4.59 16 13 C 0.04 1.70 3.17 84.91 0.27 1.97 16 14 N -0.87 -44.01 11.95 21.65 0.26 -43.75 16 15 Si 0.97 37.36 29.49 68.60 2.02 39.39 16 16 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 18 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 19 C 0.34 17.56 6.91 132.90 0.92 18.48 16 20 C -0.18 -8.18 8.06 22.50 0.18 -8.00 16 21 C -0.07 -2.67 10.17 22.45 0.23 -2.44 16 22 C -0.21 -7.04 10.11 22.39 0.23 -6.81 16 23 C 0.09 3.62 11.18 84.67 0.95 4.57 16 24 N -0.53 -26.03 7.92 -192.96 -1.53 -27.56 16 25 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.41 13.33 7.74 -92.71 -0.72 12.61 16 29 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 3.10 7.06 -2.38 -0.02 3.08 16 32 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 33 H 0.13 6.06 5.08 -2.91 -0.01 6.05 16 34 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.17 5.27 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -68.87 308.88 3.72 -65.15 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.40 Total: 37.89 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: 6.12 Total: 30.21 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -4.73 Total: -119.85 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.09 Total: -52.78 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.02 Total: 39.39 kcal Total: -68.87 3.72 -65.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334231441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.938 kcal (2) G-P(sol) polarization free energy of solvation -68.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds