Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00220 * 2 1 4 4 N 1.46499 * 109.46969 * 125.00215 * 3 2 1 5 5 C 1.46510 * 119.99856 * 269.99881 * 4 3 2 6 6 C 1.50700 * 109.47137 * 270.00164 * 5 4 3 7 7 H 1.08006 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99953 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00367 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99937 * 359.97438 * 8 6 5 11 11 H 1.48489 * 109.47308 * 90.00127 * 10 8 6 12 12 H 1.48504 * 109.47154 * 210.00454 * 10 8 6 13 13 H 1.48498 * 109.46944 * 329.99826 * 10 8 6 14 14 C 1.38427 * 120.00074 * 90.00074 * 4 3 2 15 15 N 1.32605 * 119.13698 * 179.97438 * 14 4 3 16 16 C 1.32091 * 120.97009 * 179.97438 * 15 14 4 17 17 C 1.38841 * 119.24237 * 0.02562 * 16 15 14 18 18 C 1.39495 * 118.41886 * 0.27503 * 17 16 15 19 19 C 1.48381 * 120.50893 * 179.72383 * 18 17 16 20 20 O 1.21387 * 119.99776 * 359.97438 * 19 18 17 21 21 O 1.34635 * 120.00100 * 180.02562 * 19 18 17 22 22 C 1.45200 * 117.00204 * 180.02562 * 21 19 18 23 23 N 1.32249 * 119.13825 * 0.02562 * 14 4 3 24 24 H 1.08008 * 119.99674 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00342 * 179.97438 * 1 2 3 26 26 H 1.07995 * 119.99579 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46961 * 5.00147 * 3 2 1 28 28 H 1.08995 * 109.47377 * 245.00232 * 3 2 1 29 29 H 1.08997 * 109.46980 * 30.00439 * 5 4 3 30 30 H 1.08996 * 109.46624 * 150.00234 * 5 4 3 31 31 H 0.96997 * 120.00412 * 179.97438 * 9 8 6 32 32 H 1.07995 * 120.38256 * 180.02562 * 16 15 14 33 33 H 1.08002 * 120.78813 * 179.97438 * 17 16 15 34 34 H 1.08993 * 109.47125 * 59.99436 * 22 21 19 35 35 H 1.08998 * 109.47084 * 180.02562 * 22 21 19 36 36 H 1.09004 * 109.46667 * 299.99660 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8444 3.3435 2.4805 7 1 3.3042 3.8368 1.6368 8 6 2.5195 4.0663 3.6087 9 7 2.7690 5.3566 3.6574 10 14 1.7249 3.2130 5.0681 11 1 2.7808 2.7217 5.9894 12 1 0.8488 4.1732 5.7863 13 1 0.9131 2.0656 4.5887 14 6 4.2838 0.8533 0.9783 15 7 5.1117 0.8861 2.0136 16 6 6.3500 0.4388 1.9081 17 6 6.7855 -0.0717 0.6926 18 6 5.8928 -0.0867 -0.3793 19 6 6.3113 -0.6162 -1.7007 20 8 7.4381 -1.0402 -1.8555 21 8 5.4415 -0.6253 -2.7284 22 6 5.9193 -1.1583 -3.9917 23 7 4.6584 0.3765 -0.1969 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 1.4889 1.6965 2.5460 30 1 3.0990 1.3601 3.2259 31 1 2.5402 5.8653 4.4510 32 1 7.0162 0.4697 2.7575 33 1 7.7930 -0.4437 0.5783 34 1 6.2237 -2.1960 -3.8563 35 1 5.1215 -1.1068 -4.7327 36 1 6.7715 -0.5714 -4.3345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336652332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -5.360271 kcal Electronic energy + Delta-G solvation = -21141.362117 eV Core-core repulsion = 17819.970993 eV Total energy + Delta-G solvation = -3321.391124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24834 -41.17233 -38.34813 -37.62755 -35.22849 -34.72840 -34.25343 -32.19003 -29.91030 -29.04529 -27.11066 -26.30019 -24.79085 -23.40026 -21.94391 -20.81595 -19.59625 -19.04805 -18.77638 -17.89091 -17.57733 -17.23673 -16.55291 -16.36099 -16.18122 -15.90721 -15.21814 -15.07969 -14.60571 -14.53630 -14.30656 -14.16223 -13.54149 -13.25421 -13.06010 -12.69587 -12.53124 -12.33902 -12.14839 -11.97548 -11.90227 -11.88147 -11.85699 -11.70184 -11.13431 -10.77503 -10.40227 -10.10190 -8.76069 -8.28245 -6.33339 -0.57563 0.20734 1.22831 1.33766 1.40008 1.41371 1.41831 1.50936 2.03035 2.35962 2.89846 3.03181 3.07977 3.51108 3.70673 3.98704 4.10655 4.18737 4.24842 4.31363 4.33418 4.53513 4.57145 4.70126 4.79871 4.86963 4.94047 5.07418 5.08530 5.25662 5.48835 5.64065 5.70427 5.82618 6.01109 6.25754 6.44520 6.59838 6.67390 7.23829 7.34402 8.88773 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.005271 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.432342 B = 5311.201017 C = 6170.588052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.173 4.173 3 C 0.157 3.843 4 N -0.565 5.565 5 C 0.244 3.756 6 C -0.528 4.528 7 H 0.022 0.978 8 C 0.017 3.983 9 N -0.947 5.947 10 Si 0.946 3.054 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.242 1.242 14 C 0.555 3.445 15 N -0.564 5.564 16 C 0.196 3.804 17 C -0.231 4.231 18 C 0.161 3.839 19 C 0.534 3.466 20 O -0.504 6.504 21 O -0.345 6.345 22 C 0.026 3.974 23 N -0.545 5.545 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.268 0.732 32 H 0.214 0.786 33 H 0.180 0.820 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -15.426 -9.460 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.035 3.965 4 N -0.277 5.277 5 C 0.122 3.878 6 C -0.566 4.566 7 H 0.041 0.959 8 C -0.181 4.181 9 N -0.587 5.587 10 Si 0.769 3.231 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.165 1.165 14 C 0.199 3.801 15 N -0.286 5.286 16 C 0.026 3.974 17 C -0.258 4.258 18 C 0.014 3.986 19 C 0.376 3.624 20 O -0.391 6.391 21 O -0.259 6.259 22 C -0.067 4.067 23 N -0.272 5.272 24 H 0.121 0.879 25 H 0.137 0.863 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.198 0.802 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.020 -14.983 -9.376 17.790 hybrid contribution 0.814 0.065 0.345 0.886 sum 2.834 -14.918 -9.031 17.667 Atomic orbital electron populations 1.24039 0.95010 1.03076 0.98420 1.23143 0.96549 0.97773 1.01746 1.20549 0.91325 0.96046 0.88586 1.46480 1.06642 1.61163 1.13386 1.19386 0.95277 0.92168 0.80972 1.21456 1.40439 0.93307 1.01430 0.95940 1.25754 0.95799 0.95194 1.01377 1.70053 1.49558 1.08622 1.30510 0.85737 0.79203 0.79146 0.78996 1.19181 1.20698 1.16540 1.19366 0.87759 0.88476 0.84488 1.68029 1.06381 1.21531 1.32668 1.23805 0.90083 0.85883 0.97678 1.22714 1.03175 1.06663 0.93275 1.20367 0.90139 0.95742 0.92396 1.20697 0.82649 0.74864 0.84199 1.90809 1.20573 1.44001 1.83734 1.86691 1.43010 1.75010 1.21201 1.23713 1.02796 0.99435 0.80765 1.67816 1.18249 1.17649 1.23510 0.87866 0.86313 0.88123 0.90312 0.89774 0.93907 0.94211 0.92351 0.76996 0.80227 0.90953 0.85023 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 14.32 67.78 0.97 -3.17 16 2 C -0.17 -5.18 9.85 25.64 0.25 -4.93 16 3 C 0.16 5.71 5.85 85.63 0.50 6.21 16 4 N -0.56 -24.19 2.54 -719.65 -1.83 -26.01 16 5 C 0.24 11.54 4.23 85.63 0.36 11.91 16 6 C -0.53 -30.12 9.94 25.60 0.25 -29.87 16 7 H 0.02 1.47 8.06 -2.91 -0.02 1.44 16 8 C 0.02 0.95 5.47 84.65 0.46 1.42 16 9 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 10 Si 0.95 42.73 27.47 68.60 1.88 44.61 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 14 C 0.55 22.98 8.17 261.54 2.14 25.12 16 15 N -0.56 -22.55 9.09 -198.00 -1.80 -24.35 16 16 C 0.20 5.76 11.30 84.80 0.96 6.72 16 17 C -0.23 -6.33 9.71 22.72 0.22 -6.11 16 18 C 0.16 5.21 6.79 41.96 0.28 5.49 16 19 C 0.53 15.66 7.97 70.52 0.56 16.23 16 20 O -0.50 -14.95 16.21 20.20 0.33 -14.62 16 21 O -0.34 -9.21 10.42 -55.44 -0.58 -9.79 16 22 C 0.03 0.43 10.56 113.37 1.20 1.62 16 23 N -0.55 -20.39 8.92 -187.16 -1.67 -22.06 16 24 H 0.10 2.46 7.84 -2.91 -0.02 2.44 16 25 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 26 H 0.10 3.07 8.06 -2.91 -0.02 3.04 16 27 H 0.08 2.90 7.72 -2.39 -0.02 2.88 16 28 H 0.08 3.06 7.33 -2.39 -0.02 3.04 16 29 H 0.04 1.93 7.13 -2.39 -0.02 1.91 16 30 H 0.04 1.91 6.76 -2.39 -0.02 1.89 16 31 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.21 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.18 3.78 7.73 -2.91 -0.02 3.76 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -72.69 322.97 5.83 -66.86 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.03 Total: 13.08 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 8.16 Total: 30.63 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -5.00 Total: -130.77 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.25 Total: -24.42 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.61 kcal Total: -72.69 5.83 -66.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336652332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.495 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds