Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46623 * 162.13469 * 3 2 1 5 5 C 1.36782 * 120.00098 * 96.55976 * 4 3 2 6 6 H 1.08000 * 120.00120 * 156.92991 * 5 4 3 7 7 C 1.39114 * 119.99728 * 336.92418 * 5 4 3 8 8 N 1.31314 * 120.00333 * 352.96827 * 7 5 4 9 9 Si 1.86800 * 119.99878 * 172.96340 * 7 5 4 10 10 H 1.48497 * 109.47044 * 89.99865 * 9 7 5 11 11 H 1.48501 * 109.47300 * 210.00377 * 9 7 5 12 12 H 1.48506 * 109.46964 * 330.00348 * 9 7 5 13 13 C 1.34776 * 119.99929 * 276.55679 * 4 3 2 14 14 O 1.21542 * 120.00082 * 184.89086 * 13 4 3 15 15 C 1.48166 * 119.99849 * 4.88858 * 13 4 3 16 16 C 1.42330 * 126.94651 * 186.51849 * 15 13 4 17 17 C 1.35284 * 103.92769 * 179.85356 * 16 15 13 18 18 C 1.50694 * 126.65998 * 180.10743 * 17 16 15 19 19 N 1.46895 * 109.47431 * 90.32451 * 18 17 16 20 20 C 1.46897 * 110.99875 * 66.05138 * 19 18 17 21 21 C 1.46902 * 111.00018 * 190.00289 * 19 18 17 22 22 O 1.34040 * 106.68880 * 0.40059 * 17 16 15 23 23 N 1.20905 * 111.86151 * 359.72457 * 22 17 16 24 24 H 4.40639 * 5.51474 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47748 * 42.13248 * 3 2 1 26 26 H 1.09001 * 109.46942 * 282.12942 * 3 2 1 27 27 H 0.97002 * 120.00477 * 180.02562 * 8 7 5 28 28 H 1.07999 * 128.04000 * 359.97438 * 16 15 13 29 29 H 1.09002 * 109.47301 * 210.32898 * 18 17 16 30 30 H 1.09004 * 109.46710 * 330.32900 * 18 17 16 31 31 H 1.08999 * 109.47668 * 59.99784 * 20 19 18 32 32 H 1.09001 * 109.47254 * 180.02562 * 20 19 18 33 33 H 1.09010 * 109.47097 * 299.99612 * 20 19 18 34 34 H 1.08995 * 109.47615 * 60.00235 * 21 19 18 35 35 H 1.09007 * 109.47149 * 180.02562 * 21 19 18 36 36 H 1.09002 * 109.47108 * 299.99550 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3156 -0.4238 5 6 3.4888 2.2476 0.5123 6 1 4.1741 3.0406 0.2518 7 6 2.9671 2.1740 1.7998 8 7 2.0310 1.2967 2.0798 9 14 3.5983 3.3231 3.1304 10 1 2.7842 4.5650 3.1389 11 1 3.4948 2.6542 4.4522 12 1 5.0178 3.6636 2.8578 13 6 3.2325 1.6069 -1.7360 14 8 3.7198 2.6629 -2.0891 15 6 2.7470 0.6398 -2.7481 16 6 2.8929 0.7342 -4.1607 17 6 2.2897 -0.3838 -4.6259 18 6 2.1518 -0.7980 -6.0682 19 7 3.3055 -1.6216 -6.4536 20 6 3.3101 -2.8960 -5.7230 21 6 3.3301 -1.8468 -7.9050 22 8 1.8327 -1.0484 -3.5553 23 7 2.0915 -0.4730 -2.5239 24 1 -1.0502 -0.0003 0.0003 25 1 3.0098 -0.7612 -0.6893 26 1 3.0094 -0.2151 1.0047 27 1 1.6669 1.2456 2.9775 28 1 3.3751 1.5158 -4.7292 29 1 1.2354 -1.3745 -6.1946 30 1 2.1124 0.0901 -6.6990 31 1 2.3968 -3.4469 -5.9476 32 1 4.1748 -3.4859 -6.0270 33 1 3.3625 -2.7005 -4.6519 34 1 3.3970 -0.8887 -8.4204 35 1 4.1940 -2.4595 -8.1631 36 1 2.4176 -2.3598 -8.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356023478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = 119.391267 kcal Electronic energy + Delta-G solvation = -21454.416430 eV Core-core repulsion = 18138.434939 eV Total energy + Delta-G solvation = -3315.981491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.46140 -38.53556 -37.65538 -35.24643 -33.37691 -32.34546 -31.63191 -31.14063 -27.76720 -27.32381 -26.50311 -25.38872 -23.17376 -22.68497 -21.53352 -19.05726 -17.85283 -17.36535 -16.94500 -16.50727 -16.11647 -15.46089 -15.35463 -14.87776 -14.52007 -14.08841 -13.95303 -13.45636 -12.89981 -12.74668 -12.50506 -12.39120 -12.33232 -12.24330 -11.88420 -11.80059 -11.47680 -11.07951 -10.71741 -10.51842 -10.43121 -9.76142 -9.39054 -9.26962 -9.13000 -8.79938 -8.63913 -8.54978 -7.91315 -6.39438 -3.99855 1.72379 2.27664 3.16042 3.21071 3.25832 3.31145 3.82395 3.90425 4.11190 4.17101 4.35669 4.51802 4.64807 4.90277 5.05222 5.06946 5.08601 5.19532 5.34636 5.42746 5.51872 5.61420 5.62521 5.65822 5.83968 5.87798 6.00790 6.37029 6.57849 6.67611 6.74570 6.89668 7.18105 7.44257 7.95982 8.31963 8.66951 9.00625 9.01039 9.21760 9.78472 10.58096 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033626 B = 0.004550 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.478317 B = 6152.582496 C = 6620.383149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.083 4.083 3 C 0.231 3.769 4 N -0.413 5.413 5 C -0.310 4.310 6 H 0.107 0.893 7 C 0.033 3.967 8 N -0.859 5.859 9 Si 0.934 3.066 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.574 6.574 15 C 0.000 4.000 16 C -0.163 4.163 17 C -0.056 4.056 18 C 0.142 3.858 19 N -0.545 5.545 20 C 0.021 3.979 21 C 0.026 3.974 22 O 0.100 5.900 23 N -0.327 5.327 24 H 0.195 0.805 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.272 0.728 28 H 0.172 0.828 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -8.678 -13.461 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.085 4.085 3 C 0.108 3.892 4 N -0.130 5.130 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.497 5.497 9 Si 0.760 3.240 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.458 6.458 15 C -0.159 4.159 16 C -0.186 4.186 17 C -0.119 4.119 18 C 0.014 3.986 19 N -0.269 5.269 20 C -0.127 4.127 21 C -0.122 4.122 22 O 0.030 5.970 23 N -0.032 5.032 24 H 0.212 0.788 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.190 0.810 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.419 -8.549 -12.183 14.889 hybrid contribution -0.602 0.568 0.065 0.831 sum -1.021 -7.980 -12.118 14.546 Atomic orbital electron populations 1.24101 0.95232 1.03265 1.07118 1.22781 0.93904 0.97229 0.94587 1.18499 0.84890 0.84219 1.01610 1.43552 1.53282 1.12450 1.03697 1.19776 1.25719 1.08495 0.89794 0.87494 1.25507 0.95009 0.97750 0.99019 1.69960 1.24000 1.34083 1.21647 0.85800 0.79465 0.79636 0.79073 1.20157 1.20667 1.19146 1.16781 0.86394 0.85510 0.81611 1.90612 1.50184 1.25291 1.79693 1.23976 1.01493 0.94993 0.95429 1.22324 1.03487 0.99844 0.92910 1.23956 1.02135 0.94288 0.91547 1.20416 0.92500 0.98909 0.86788 1.61961 1.41345 1.17253 1.06367 1.22461 1.00661 0.89777 0.99838 1.22387 1.00852 1.01995 0.86999 1.84785 1.59033 1.42831 1.10385 1.74530 1.15321 1.08760 1.04606 0.78755 0.91407 0.86674 0.91675 0.81023 0.92459 0.87598 0.95140 0.91138 0.90910 0.91010 0.90986 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.37 19.25 29.55 0.57 -5.80 16 2 C -0.08 -2.05 9.75 -37.12 -0.36 -2.41 16 3 C 0.23 5.65 4.75 -6.82 -0.03 5.61 16 4 N -0.41 -11.12 2.59 -118.90 -0.31 -11.43 16 5 C -0.31 -8.65 9.32 -15.02 -0.14 -8.79 16 6 H 0.11 3.07 7.36 -52.49 -0.39 2.68 16 7 C 0.03 0.85 5.17 -17.45 -0.09 0.76 16 8 N -0.86 -22.73 8.96 55.50 0.50 -22.23 16 9 Si 0.93 20.48 29.56 -169.99 -5.02 15.46 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.51 13.49 7.58 -12.18 -0.09 13.40 16 14 O -0.57 -16.51 16.64 5.33 0.09 -16.42 16 15 C 0.00 0.00 6.73 -82.54 -0.56 -0.55 16 16 C -0.16 -2.93 10.93 -39.06 -0.43 -3.36 16 17 C -0.06 -0.84 6.03 -35.36 -0.21 -1.06 16 18 C 0.14 1.51 5.52 -4.98 -0.03 1.48 16 19 N -0.54 -5.70 5.01 -252.72 -1.27 -6.97 16 20 C 0.02 0.21 9.37 60.06 0.56 0.77 16 21 C 0.03 0.19 9.57 60.07 0.57 0.76 16 22 O 0.10 1.74 10.61 17.18 0.18 1.93 16 23 N -0.33 -6.78 7.73 33.30 0.26 -6.52 16 24 H 0.20 3.70 7.80 -54.08 -0.42 3.28 16 25 H 0.07 1.55 6.06 -51.93 -0.31 1.23 16 26 H 0.12 2.90 6.34 -51.93 -0.33 2.57 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 29 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.11 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.07 0.88 6.83 -51.92 -0.35 0.53 16 34 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -32.19 313.97 -5.39 -37.58 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.32 Total: 3.05 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.23 Total: 0.83 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.82 Total: -47.15 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.27 Total: -14.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.19 -5.39 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356023478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.968 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds