Wall clock time and date at job start Mon Mar 30 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42910 * 109.46705 * 259.47870 * 3 2 1 5 5 C 1.42899 * 113.99389 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47280 * 329.99540 * 5 4 3 7 7 C 1.52997 * 109.47380 * 90.00241 * 5 4 3 8 8 C 1.50708 * 109.46770 * 209.99982 * 5 4 3 9 9 O 1.21289 * 119.99669 * 354.99756 * 8 5 4 10 10 N 1.34772 * 119.99727 * 175.00080 * 8 5 4 11 11 C 1.40163 * 119.99566 * 179.97438 * 10 8 5 12 12 C 1.40409 * 125.97252 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.76019 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97499 * 180.02562 * 11 10 8 25 25 H 4.38452 * 5.44432 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46918 * 139.48383 * 3 2 1 27 27 H 1.09001 * 109.47392 * 19.47747 * 3 2 1 28 28 H 1.09003 * 109.46720 * 299.99305 * 7 5 4 29 29 H 1.09001 * 109.47487 * 59.99426 * 7 5 4 30 30 H 1.08996 * 109.47227 * 179.97438 * 7 5 4 31 31 H 0.96996 * 120.00403 * 359.97438 * 10 8 5 32 32 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 33 33 H 1.08004 * 126.06994 * 180.24391 * 13 12 11 34 34 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 35 35 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 36 36 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.2469 1.3247 5 6 4.5467 0.2687 1.4355 6 1 4.9797 -0.3928 0.6852 7 6 5.0539 1.6947 1.2119 8 6 4.9508 -0.1984 2.8102 9 8 4.1024 -0.4316 3.6451 10 7 6.2547 -0.3569 3.1118 11 6 6.6305 -0.7908 4.3904 12 6 5.7581 -1.0954 5.4476 13 6 6.5070 -1.4803 6.5059 14 7 7.8046 -1.4148 6.1404 15 6 8.9546 -1.7435 6.9864 16 6 9.8019 -2.7840 6.3003 17 1 9.5128 -3.1622 5.3308 18 6 10.9460 -3.2530 6.9101 19 7 11.3008 -2.7886 8.0882 20 14 11.9966 -4.5422 6.0593 21 1 13.1655 -4.8711 6.9142 22 1 11.1890 -5.7676 5.8321 23 1 12.4703 -4.0127 4.7554 24 7 7.8592 -0.9834 4.8089 25 1 -1.0501 0.0002 -0.0002 26 1 3.0090 0.7821 -0.6676 27 1 3.0098 -0.9680 -0.3427 28 1 4.7617 2.0325 0.2176 29 1 4.6209 2.3563 1.9623 30 1 6.1404 1.7114 1.2969 31 1 6.9331 -0.1707 2.4440 32 1 4.6800 -1.0372 5.4191 33 1 6.1332 -1.7837 7.4727 34 1 8.6032 -2.1335 7.9417 35 1 9.5487 -0.8458 7.1568 36 1 10.7555 -2.1190 8.5300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456681096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:24 Heat of formation + Delta-G solvation = 59.711094 kcal Electronic energy + Delta-G solvation = -20213.459673 eV Core-core repulsion = 16894.890256 eV Total energy + Delta-G solvation = -3318.569418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84951 -39.75460 -38.03066 -34.89194 -33.89143 -33.62303 -31.83459 -30.57290 -29.39799 -27.46932 -26.43795 -24.70002 -22.99576 -21.54802 -20.48045 -19.68549 -18.87510 -17.45692 -17.20388 -17.11104 -16.39469 -15.97492 -15.36954 -15.18854 -14.77356 -14.12521 -13.90920 -13.79960 -13.40297 -13.21429 -12.89791 -12.57922 -12.46591 -12.22399 -11.87122 -11.71440 -11.18706 -11.00172 -10.88781 -10.82696 -10.48718 -10.17503 -10.13729 -9.97872 -9.49429 -9.02101 -8.59721 -8.23684 -7.55784 -6.59611 -4.33770 1.99246 2.21395 2.48085 2.65699 2.81699 3.36600 3.38117 3.51300 3.57731 3.60874 3.79591 4.19846 4.38937 4.41945 4.53927 4.66445 4.78932 4.99992 5.14034 5.22068 5.29846 5.44457 5.56597 5.68148 5.76170 6.14078 6.38143 6.43464 6.56277 6.68044 6.73365 7.24157 7.28793 7.45051 7.68283 7.80872 8.16067 8.32300 8.51110 8.59987 9.34451 10.77958 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.003008 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.811683 B = 9306.530314 C = 9550.677136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.193 4.193 3 C 0.170 3.830 4 O -0.350 6.350 5 C 0.079 3.921 6 H 0.095 0.905 7 C -0.174 4.174 8 C 0.519 3.481 9 O -0.494 6.494 10 N -0.628 5.628 11 C 0.259 3.741 12 C -0.285 4.285 13 C 0.052 3.948 14 N -0.317 5.317 15 C 0.249 3.751 16 C -0.608 4.608 17 H 0.063 0.937 18 C 0.023 3.977 19 N -0.904 5.904 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.301 5.301 25 H 0.222 0.778 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.411 0.589 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.758 7.023 -15.941 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.193 4.193 3 C 0.094 3.906 4 O -0.268 6.268 5 C 0.017 3.983 6 H 0.112 0.888 7 C -0.231 4.231 8 C 0.303 3.697 9 O -0.365 6.365 10 N -0.277 5.277 11 C 0.006 3.994 12 C -0.316 4.316 13 C -0.098 4.098 14 N -0.099 5.099 15 C 0.131 3.869 16 C -0.646 4.646 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.540 5.540 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.132 5.132 25 H 0.239 0.761 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.246 0.754 32 H 0.179 0.821 33 H 0.186 0.814 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.804 6.003 -15.241 20.791 hybrid contribution -1.900 0.932 -0.448 2.164 sum -14.704 6.936 -15.689 22.593 Atomic orbital electron populations 1.24983 0.95903 1.00526 0.97344 1.22401 0.93781 1.00863 1.02285 1.19196 0.85122 1.01115 0.85118 1.88126 1.18704 1.92647 1.27338 1.21806 0.83114 0.98484 0.94901 0.88772 1.22283 1.02126 0.95066 1.03647 1.20269 0.81660 0.78155 0.89656 1.90677 1.49857 1.47209 1.48740 1.42327 1.07678 1.66295 1.11447 1.19064 0.92453 1.01500 0.86366 1.21550 1.01218 1.16716 0.92136 1.22572 0.84719 1.02035 1.00489 1.48795 1.06248 1.47303 1.07528 1.19770 0.81565 0.97181 0.88383 1.22096 1.10881 1.24436 1.07213 0.91850 1.25929 0.96295 1.00157 0.95828 1.70852 1.40276 1.28494 1.14349 0.83417 0.75909 0.75054 0.75234 1.20511 1.21235 1.21139 1.77344 1.17145 1.24164 0.94501 0.76098 0.90467 0.90450 0.90850 0.90685 0.90414 0.75359 0.82145 0.81425 0.93587 0.94733 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.19 -1.95 13.73 -37.12 -0.51 -2.46 16 3 C 0.17 1.44 6.22 34.37 0.21 1.65 16 4 O -0.35 -4.17 9.48 -55.09 -0.52 -4.69 16 5 C 0.08 0.77 3.13 -27.88 -0.09 0.68 16 6 H 0.09 0.61 7.79 -51.93 -0.40 0.21 16 7 C -0.17 -1.29 9.48 37.16 0.35 -0.93 16 8 C 0.52 7.52 7.15 -10.98 -0.08 7.45 16 9 O -0.49 -9.21 13.64 -14.31 -0.20 -9.40 16 10 N -0.63 -9.41 5.41 -11.13 -0.06 -9.47 16 11 C 0.26 5.19 8.11 -154.38 -1.25 3.94 16 12 C -0.28 -5.73 9.61 -39.83 -0.38 -6.11 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 14 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 15 C 0.25 6.29 5.57 -5.19 -0.03 6.26 16 16 C -0.61 -17.04 9.24 -34.44 -0.32 -17.36 16 17 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 19 N -0.90 -26.25 13.65 55.43 0.76 -25.50 16 20 Si 1.08 24.78 29.90 -169.99 -5.08 19.70 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 24 N -0.30 -6.91 12.42 31.44 0.39 -6.52 16 25 H 0.22 1.06 7.80 -54.09 -0.42 0.63 16 26 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 27 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 31 H 0.41 4.75 8.61 -40.82 -0.35 4.40 16 32 H 0.16 3.18 5.92 -52.49 -0.31 2.87 16 33 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 34 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 35 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 36 H 0.27 7.58 7.22 -40.82 -0.29 7.29 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -35.92 326.91 -6.14 -42.06 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.31 Total: 2.96 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.82 Total: -6.42 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.86 Total: -49.13 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.72 Total: -14.10 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.92 -6.14 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456681096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.772 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds