Wall clock time and date at job start Mon Mar 30 2020 01:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42910 * 109.46705 * 259.47870 * 3 2 1 5 5 C 1.42899 * 113.99389 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47280 * 329.99540 * 5 4 3 7 7 C 1.52997 * 109.47380 * 90.00241 * 5 4 3 8 8 C 1.50708 * 109.46770 * 209.99982 * 5 4 3 9 9 O 1.21289 * 119.99669 * 354.99756 * 8 5 4 10 10 N 1.34772 * 119.99727 * 175.00080 * 8 5 4 11 11 C 1.40163 * 119.99566 * 179.97438 * 10 8 5 12 12 C 1.40409 * 125.97252 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.76019 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97499 * 180.02562 * 11 10 8 25 25 H 4.38452 * 5.44432 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46918 * 139.48383 * 3 2 1 27 27 H 1.09001 * 109.47392 * 19.47747 * 3 2 1 28 28 H 1.09003 * 109.46720 * 299.99305 * 7 5 4 29 29 H 1.09001 * 109.47487 * 59.99426 * 7 5 4 30 30 H 1.08996 * 109.47227 * 179.97438 * 7 5 4 31 31 H 0.96996 * 120.00403 * 359.97438 * 10 8 5 32 32 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 33 33 H 1.08004 * 126.06994 * 180.24391 * 13 12 11 34 34 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 35 35 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 36 36 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.2469 1.3247 5 6 4.5467 0.2687 1.4355 6 1 4.9797 -0.3928 0.6852 7 6 5.0539 1.6947 1.2119 8 6 4.9508 -0.1984 2.8102 9 8 4.1024 -0.4316 3.6451 10 7 6.2547 -0.3569 3.1118 11 6 6.6305 -0.7908 4.3904 12 6 5.7581 -1.0954 5.4476 13 6 6.5070 -1.4803 6.5059 14 7 7.8046 -1.4148 6.1404 15 6 8.9546 -1.7435 6.9864 16 6 9.8019 -2.7840 6.3003 17 1 9.5128 -3.1622 5.3308 18 6 10.9460 -3.2530 6.9101 19 7 11.3008 -2.7886 8.0882 20 14 11.9966 -4.5422 6.0593 21 1 13.1655 -4.8711 6.9142 22 1 11.1890 -5.7676 5.8321 23 1 12.4703 -4.0127 4.7554 24 7 7.8592 -0.9834 4.8089 25 1 -1.0501 0.0002 -0.0002 26 1 3.0090 0.7821 -0.6676 27 1 3.0098 -0.9680 -0.3427 28 1 4.7617 2.0325 0.2176 29 1 4.6209 2.3563 1.9623 30 1 6.1404 1.7114 1.2969 31 1 6.9331 -0.1707 2.4440 32 1 4.6800 -1.0372 5.4191 33 1 6.1332 -1.7837 7.4727 34 1 8.6032 -2.1335 7.9417 35 1 9.5487 -0.8458 7.1568 36 1 10.7555 -2.1190 8.5300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456681096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:23 Heat of formation + Delta-G solvation = 35.766948 kcal Electronic energy + Delta-G solvation = -20214.497970 eV Core-core repulsion = 16894.890256 eV Total energy + Delta-G solvation = -3319.607714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35256 -40.96988 -38.94623 -36.44313 -35.59635 -34.45030 -33.06368 -31.90568 -31.03312 -28.26731 -28.08029 -25.88011 -24.77317 -22.85635 -22.02346 -20.99890 -19.61851 -19.24947 -18.60754 -18.00163 -17.72330 -16.90981 -16.72269 -16.34040 -15.95056 -15.73871 -15.56549 -15.03702 -14.80350 -14.23395 -14.04997 -13.87811 -13.77635 -13.54685 -13.25493 -13.13108 -12.61053 -12.46711 -12.05398 -11.95143 -11.73973 -11.65167 -11.56173 -11.01669 -10.91817 -10.69516 -10.51042 -9.87248 -9.24677 -8.78211 -6.56251 0.82340 1.04696 1.33287 1.51694 1.56140 1.58068 1.79739 1.82659 2.11562 2.19728 2.49193 2.98301 3.01230 3.38966 3.62906 3.84429 3.88207 4.00650 4.11551 4.26849 4.48258 4.54981 4.67595 4.69104 4.75823 4.79961 4.80806 5.02147 5.05426 5.21343 5.54258 5.78623 5.90407 5.92298 6.21442 6.25422 6.40334 6.60350 6.88674 7.03163 7.19586 8.58202 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.003008 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.811683 B = 9306.530314 C = 9550.677136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.385 6.385 5 C 0.087 3.913 6 H 0.136 0.864 7 C -0.169 4.169 8 C 0.516 3.484 9 O -0.539 6.539 10 N -0.617 5.617 11 C 0.268 3.732 12 C -0.294 4.294 13 C 0.056 3.944 14 N -0.343 5.343 15 C 0.259 3.741 16 C -0.621 4.621 17 H 0.046 0.954 18 C -0.020 4.020 19 N -0.923 5.923 20 Si 1.120 2.880 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.273 1.273 24 N -0.340 5.340 25 H 0.251 0.749 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.428 0.572 32 H 0.165 0.835 33 H 0.201 0.799 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.255 6.929 -18.071 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.238 4.238 3 C 0.089 3.911 4 O -0.304 6.304 5 C 0.026 3.974 6 H 0.153 0.847 7 C -0.227 4.227 8 C 0.303 3.697 9 O -0.413 6.413 10 N -0.269 5.269 11 C 0.013 3.987 12 C -0.325 4.325 13 C -0.092 4.092 14 N -0.125 5.125 15 C 0.140 3.860 16 C -0.659 4.659 17 H 0.065 0.935 18 C -0.219 4.219 19 N -0.559 5.559 20 Si 0.941 3.059 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.199 1.199 24 N -0.170 5.170 25 H 0.267 0.733 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.267 0.733 32 H 0.182 0.818 33 H 0.218 0.782 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.319 5.938 -17.407 22.708 hybrid contribution -1.930 1.024 0.164 2.191 sum -15.250 6.962 -17.243 24.049 Atomic orbital electron populations 1.25869 0.96974 0.99563 0.96034 1.23165 0.95128 1.01950 1.03520 1.19518 0.84447 1.03120 0.84045 1.88072 1.19716 1.92940 1.29711 1.21924 0.82815 1.00540 0.92104 0.84703 1.22309 1.02862 0.92868 1.04640 1.21377 0.80611 0.76483 0.91260 1.90647 1.50929 1.49100 1.50633 1.42466 1.08728 1.65713 1.09984 1.19431 0.91560 0.99531 0.88133 1.21723 1.01378 1.17009 0.92412 1.23162 0.83540 1.00610 1.01888 1.48593 1.06566 1.49349 1.07970 1.19439 0.82035 0.95725 0.88816 1.22279 1.11730 1.25190 1.06725 0.93546 1.27298 0.97415 1.01467 0.95736 1.70948 1.40625 1.29143 1.15199 0.82876 0.74805 0.73429 0.74796 1.20062 1.19685 1.19872 1.77264 1.18783 1.26209 0.94793 0.73314 0.87493 0.88787 0.87923 0.92736 0.88894 0.73329 0.81796 0.78204 0.92902 0.96424 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.24 -4.49 13.73 31.13 0.43 -4.06 16 3 C 0.16 2.39 6.22 70.18 0.44 2.83 16 4 O -0.39 -8.54 9.48 -129.99 -1.23 -9.77 16 5 C 0.09 1.48 3.13 29.85 0.09 1.58 16 6 H 0.14 1.21 7.79 -2.39 -0.02 1.19 16 7 C -0.17 -2.02 9.48 71.98 0.68 -1.34 16 8 C 0.52 14.36 7.15 87.66 0.63 14.99 16 9 O -0.54 -20.05 13.64 15.93 0.22 -19.84 16 10 N -0.62 -17.76 5.41 -307.51 -1.66 -19.43 16 11 C 0.27 10.66 8.11 133.32 1.08 11.74 16 12 C -0.29 -11.79 9.61 22.11 0.21 -11.58 16 13 C 0.06 2.26 11.44 83.52 0.96 3.21 16 14 N -0.34 -16.21 3.67 -351.83 -1.29 -17.50 16 15 C 0.26 13.34 5.57 85.64 0.48 13.82 16 16 C -0.62 -35.22 9.24 25.60 0.24 -34.99 16 17 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 18 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 19 N -0.92 -53.87 13.65 21.45 0.29 -53.58 16 20 Si 1.12 49.30 29.90 68.60 2.05 51.35 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 N -0.34 -15.72 12.42 -54.45 -0.68 -16.40 16 25 H 0.25 1.87 7.80 -4.41 -0.03 1.83 16 26 H 0.11 0.85 7.87 -2.39 -0.02 0.83 16 27 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 28 H 0.10 0.66 7.87 -2.39 -0.02 0.65 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.83 7.92 -2.39 -0.02 0.81 16 31 H 0.43 9.09 8.61 -92.71 -0.80 8.30 16 32 H 0.16 6.50 5.92 -2.91 -0.02 6.49 16 33 H 0.20 6.37 8.06 -2.91 -0.02 6.34 16 34 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 35 H 0.02 0.96 8.00 -2.39 -0.02 0.95 16 36 H 0.26 15.05 7.22 -92.71 -0.67 14.38 16 Total: -1.00 -79.50 326.91 5.22 -74.28 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.40 Total: 16.54 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 7.12 Total: -5.65 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.34 Total: -106.90 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.02 Total: -29.61 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.35 kcal Total: -79.50 5.22 -74.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456681096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.044 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds