Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47401 * 253.20542 * 3 2 1 5 5 C 1.42895 * 114.00054 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47064 * 30.00804 * 5 4 3 7 7 C 1.52997 * 109.47503 * 270.00102 * 5 4 3 8 8 C 1.50706 * 109.46938 * 149.99840 * 5 4 3 9 9 O 1.21291 * 120.00058 * 5.00435 * 8 5 4 10 10 N 1.34772 * 120.00061 * 184.99917 * 8 5 4 11 11 C 1.40155 * 119.99970 * 180.02562 * 10 8 5 12 12 C 1.40412 * 125.97340 * 359.71746 * 11 10 8 13 13 C 1.35237 * 107.86516 * 179.82702 * 12 11 10 14 14 N 1.34963 * 107.86538 * 0.43325 * 13 12 11 15 15 C 1.46501 * 125.97918 * 179.68893 * 14 13 12 16 16 C 1.50707 * 109.46936 * 125.01652 * 15 14 13 17 17 H 1.07997 * 120.00238 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99903 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99865 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99996 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46727 * 89.99941 * 20 18 16 22 22 H 1.48495 * 109.47033 * 209.99904 * 20 18 16 23 23 H 1.48492 * 109.47097 * 330.00075 * 20 18 16 24 24 N 1.31225 * 125.97262 * 180.02562 * 11 10 8 25 25 H 4.38445 * 5.44457 * 179.97438 * 4 1 2 26 26 H 1.09005 * 109.47002 * 133.20304 * 3 2 1 27 27 H 1.09004 * 109.47190 * 13.20614 * 3 2 1 28 28 H 1.09002 * 109.47153 * 60.00043 * 7 5 4 29 29 H 1.09001 * 109.46832 * 300.00234 * 7 5 4 30 30 H 1.09004 * 109.47261 * 180.02562 * 7 5 4 31 31 H 0.97003 * 120.00213 * 0.02562 * 10 8 5 32 32 H 1.07991 * 126.06258 * 359.97438 * 12 11 10 33 33 H 1.08004 * 126.07059 * 180.13205 * 13 12 11 34 34 H 1.08993 * 109.47557 * 245.01245 * 15 14 13 35 35 H 1.08995 * 109.47032 * 5.01875 * 15 14 13 36 36 H 0.96997 * 119.99616 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1222 0.3902 1.2898 5 6 4.5466 0.4228 1.3979 6 1 4.9792 0.6667 0.4276 7 6 5.0551 -0.9464 1.8535 8 6 4.9501 1.4690 2.4048 9 8 4.1015 2.0587 3.0399 10 7 6.2539 1.7494 2.5998 11 6 6.6291 2.7220 3.5366 12 6 5.7560 3.4806 4.3326 13 6 6.5049 4.3010 5.1040 14 7 7.8023 4.0809 4.8043 15 6 8.9518 4.7630 5.4040 16 6 9.9028 3.7406 5.9711 17 1 9.6740 2.6881 5.8924 18 6 11.0649 4.1490 6.5906 19 7 11.3433 5.4307 6.6869 20 14 12.2432 2.8818 7.2943 21 1 13.2286 2.4909 6.2542 22 1 12.9574 3.4631 8.4592 23 1 11.4805 1.6840 7.7286 24 7 7.8575 3.0868 3.8190 25 1 -1.0500 0.0002 -0.0001 26 1 3.0089 0.7044 -0.7491 27 1 3.0097 -0.9997 -0.2348 28 1 4.7633 -1.7031 1.1252 29 1 4.6226 -1.1901 2.8239 30 1 6.1417 -0.9213 1.9364 31 1 6.9326 1.2780 2.0917 32 1 4.6779 3.4182 4.3310 33 1 6.1309 5.0102 5.8276 34 1 9.4631 5.3514 4.6422 35 1 8.6080 5.4214 6.2017 36 1 12.1610 5.7180 7.1224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456681138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = 62.343676 kcal Electronic energy + Delta-G solvation = -20185.206593 eV Core-core repulsion = 16866.751333 eV Total energy + Delta-G solvation = -3318.455260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76958 -39.68941 -37.99107 -34.78850 -33.80599 -33.36542 -31.80592 -30.63137 -29.31485 -27.44774 -26.77154 -24.74519 -22.92529 -21.48357 -20.28112 -19.62316 -18.84331 -17.40139 -17.07470 -16.58987 -16.36292 -15.98621 -15.38105 -15.02085 -14.94434 -14.26504 -14.05855 -13.74524 -13.33108 -12.92657 -12.80405 -12.50046 -12.33553 -12.23243 -11.83483 -11.66974 -11.07033 -10.97005 -10.90210 -10.85696 -10.44441 -10.26855 -10.09753 -9.92988 -9.51561 -9.43617 -8.64423 -8.14918 -7.48966 -6.25326 -4.30426 2.02062 2.27497 2.49516 2.71190 2.91234 3.23036 3.28819 3.33850 3.57941 3.68603 3.86772 4.22175 4.31098 4.45775 4.58286 4.69760 4.80918 5.01705 5.09849 5.26422 5.34064 5.54354 5.58227 5.78161 5.81354 6.23385 6.47271 6.51983 6.72738 6.85293 7.04213 7.25624 7.36878 7.55908 7.70017 7.87691 8.03110 8.21718 8.61213 8.78976 9.35211 10.83434 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.038743 B = 0.003008 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.538482 B = 9306.495176 C = 9812.912894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.193 4.193 3 C 0.170 3.830 4 O -0.350 6.350 5 C 0.079 3.921 6 H 0.094 0.906 7 C -0.174 4.174 8 C 0.518 3.482 9 O -0.494 6.494 10 N -0.628 5.628 11 C 0.257 3.743 12 C -0.288 4.288 13 C 0.052 3.948 14 N -0.318 5.318 15 C 0.258 3.742 16 C -0.528 4.528 17 H 0.069 0.931 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.303 5.303 25 H 0.222 0.778 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.410 0.590 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 -10.631 -13.194 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.193 4.193 3 C 0.095 3.905 4 O -0.268 6.268 5 C 0.017 3.983 6 H 0.112 0.888 7 C -0.232 4.232 8 C 0.302 3.698 9 O -0.365 6.365 10 N -0.277 5.277 11 C 0.004 3.996 12 C -0.319 4.319 13 C -0.098 4.098 14 N -0.100 5.100 15 C 0.141 3.859 16 C -0.567 4.567 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.736 3.264 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.135 5.135 25 H 0.239 0.761 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.246 0.754 32 H 0.177 0.823 33 H 0.186 0.814 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.700 -10.141 -12.709 21.261 hybrid contribution 0.263 -0.711 0.162 0.775 sum -13.436 -10.851 -12.547 21.347 Atomic orbital electron populations 1.24979 0.95903 1.00396 0.97522 1.22405 0.93789 1.00900 1.02206 1.19191 0.85109 1.00289 0.85961 1.88126 1.18757 1.89282 1.30640 1.21808 0.83055 0.94833 0.98595 0.88841 1.22287 1.02170 0.95051 1.03657 1.20249 0.81716 0.83646 0.84180 1.90679 1.49848 1.49684 1.46295 1.42319 1.07624 1.38243 1.39546 1.19060 0.92481 0.93749 0.94272 1.21534 1.01153 1.04437 1.04755 1.22568 0.84826 1.01374 1.01000 1.49092 1.06536 1.27055 1.27358 1.19756 0.80713 0.92244 0.93230 1.21252 1.04612 0.93542 1.37268 0.91301 1.24952 0.97705 0.95769 0.95694 1.69918 1.25929 1.14062 1.43429 0.86318 0.80528 0.81062 0.78534 1.20336 1.20980 1.19723 1.77328 1.17034 1.08768 1.10324 0.76112 0.90487 0.90488 0.90902 0.90654 0.90378 0.75421 0.82305 0.81417 0.93689 0.92490 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 19.25 29.55 0.57 -0.91 16 2 C -0.19 -1.95 13.73 -37.12 -0.51 -2.46 16 3 C 0.17 1.44 6.22 34.37 0.21 1.65 16 4 O -0.35 -4.19 9.48 -55.09 -0.52 -4.71 16 5 C 0.08 0.78 3.13 -27.88 -0.09 0.69 16 6 H 0.09 0.60 7.79 -51.93 -0.40 0.19 16 7 C -0.17 -1.34 9.48 37.16 0.35 -0.99 16 8 C 0.52 7.55 7.15 -10.98 -0.08 7.47 16 9 O -0.49 -9.25 13.64 -14.31 -0.20 -9.45 16 10 N -0.63 -9.41 5.41 -11.13 -0.06 -9.47 16 11 C 0.26 5.13 8.11 -154.39 -1.25 3.88 16 12 C -0.29 -5.78 9.61 -39.83 -0.38 -6.16 16 13 C 0.05 1.05 11.43 -17.24 -0.20 0.86 16 14 N -0.32 -7.40 3.67 -62.56 -0.23 -7.63 16 15 C 0.26 6.53 6.26 -5.19 -0.03 6.50 16 16 C -0.53 -14.63 9.24 -34.44 -0.32 -14.95 16 17 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -25.23 13.29 55.43 0.74 -24.49 16 20 Si 0.91 21.25 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.30 -6.91 12.42 31.44 0.39 -6.52 16 25 H 0.22 1.06 7.80 -54.09 -0.42 0.64 16 26 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 28 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.51 7.92 -51.93 -0.41 0.09 16 31 H 0.41 4.74 8.61 -40.82 -0.35 4.39 16 32 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 33 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -34.87 328.22 -6.14 -41.02 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.37 Total: 2.91 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.82 Total: -2.83 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.84 Total: -48.12 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.72 Total: -14.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.87 -6.14 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456681138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.360 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds