Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47401 * 253.20542 * 3 2 1 5 5 C 1.42895 * 114.00054 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47064 * 30.00804 * 5 4 3 7 7 C 1.52997 * 109.47503 * 270.00102 * 5 4 3 8 8 C 1.50706 * 109.46938 * 149.99840 * 5 4 3 9 9 O 1.21291 * 120.00058 * 5.00435 * 8 5 4 10 10 N 1.34772 * 120.00061 * 184.99917 * 8 5 4 11 11 C 1.40155 * 119.99970 * 180.02562 * 10 8 5 12 12 C 1.40412 * 125.97340 * 359.71746 * 11 10 8 13 13 C 1.35237 * 107.86516 * 179.82702 * 12 11 10 14 14 N 1.34963 * 107.86538 * 0.43325 * 13 12 11 15 15 C 1.46501 * 125.97918 * 179.68893 * 14 13 12 16 16 C 1.50707 * 109.46936 * 125.01652 * 15 14 13 17 17 H 1.07997 * 120.00238 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99903 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99865 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99996 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46727 * 89.99941 * 20 18 16 22 22 H 1.48495 * 109.47033 * 209.99904 * 20 18 16 23 23 H 1.48492 * 109.47097 * 330.00075 * 20 18 16 24 24 N 1.31225 * 125.97262 * 180.02562 * 11 10 8 25 25 H 4.38445 * 5.44457 * 179.97438 * 4 1 2 26 26 H 1.09005 * 109.47002 * 133.20304 * 3 2 1 27 27 H 1.09004 * 109.47190 * 13.20614 * 3 2 1 28 28 H 1.09002 * 109.47153 * 60.00043 * 7 5 4 29 29 H 1.09001 * 109.46832 * 300.00234 * 7 5 4 30 30 H 1.09004 * 109.47261 * 180.02562 * 7 5 4 31 31 H 0.97003 * 120.00213 * 0.02562 * 10 8 5 32 32 H 1.07991 * 126.06258 * 359.97438 * 12 11 10 33 33 H 1.08004 * 126.07059 * 180.13205 * 13 12 11 34 34 H 1.08993 * 109.47557 * 245.01245 * 15 14 13 35 35 H 1.08995 * 109.47032 * 5.01875 * 15 14 13 36 36 H 0.96997 * 119.99616 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1222 0.3902 1.2898 5 6 4.5466 0.4228 1.3979 6 1 4.9792 0.6667 0.4276 7 6 5.0551 -0.9464 1.8535 8 6 4.9501 1.4690 2.4048 9 8 4.1015 2.0587 3.0399 10 7 6.2539 1.7494 2.5998 11 6 6.6291 2.7220 3.5366 12 6 5.7560 3.4806 4.3326 13 6 6.5049 4.3010 5.1040 14 7 7.8023 4.0809 4.8043 15 6 8.9518 4.7630 5.4040 16 6 9.9028 3.7406 5.9711 17 1 9.6740 2.6881 5.8924 18 6 11.0649 4.1490 6.5906 19 7 11.3433 5.4307 6.6869 20 14 12.2432 2.8818 7.2943 21 1 13.2286 2.4909 6.2542 22 1 12.9574 3.4631 8.4592 23 1 11.4805 1.6840 7.7286 24 7 7.8575 3.0868 3.8190 25 1 -1.0500 0.0002 -0.0001 26 1 3.0089 0.7044 -0.7491 27 1 3.0097 -0.9997 -0.2348 28 1 4.7633 -1.7031 1.1252 29 1 4.6226 -1.1901 2.8239 30 1 6.1417 -0.9213 1.9364 31 1 6.9326 1.2780 2.0917 32 1 4.6779 3.4182 4.3310 33 1 6.1309 5.0102 5.8276 34 1 9.4631 5.3514 4.6422 35 1 8.6080 5.4214 6.2017 36 1 12.1610 5.7180 7.1224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456681138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = 39.358034 kcal Electronic energy + Delta-G solvation = -20186.203326 eV Core-core repulsion = 16866.751333 eV Total energy + Delta-G solvation = -3319.451993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.26090 -40.91130 -38.91370 -36.25793 -35.32632 -34.42871 -33.09032 -31.94170 -30.94445 -28.61673 -28.06416 -25.89511 -24.63175 -22.78554 -21.82833 -20.93724 -19.58999 -18.71912 -18.51284 -17.95490 -17.73017 -17.01864 -16.66052 -16.34371 -16.10373 -15.90827 -15.44229 -14.82528 -14.48400 -14.27742 -14.02055 -13.83488 -13.67278 -13.54582 -13.15369 -12.91907 -12.73252 -12.43816 -12.29518 -12.07355 -11.70376 -11.62157 -11.54303 -11.39667 -10.87975 -10.72128 -10.48186 -9.77959 -9.14996 -8.32988 -6.47043 0.90636 1.10633 1.37924 1.39307 1.42343 1.51340 1.61921 1.84073 2.18786 2.25845 2.38754 2.98860 3.01421 3.43465 3.64995 3.88660 3.97317 4.03782 4.25413 4.28679 4.50062 4.70575 4.74013 4.80501 4.88375 4.91824 5.02156 5.03605 5.12834 5.23421 5.56717 5.79127 5.89446 5.96255 6.24134 6.30343 6.61772 6.64517 6.97214 7.09956 7.22907 8.74801 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.038743 B = 0.003008 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.538482 B = 9306.495176 C = 9812.912894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.237 4.237 3 C 0.163 3.837 4 O -0.385 6.385 5 C 0.087 3.913 6 H 0.137 0.863 7 C -0.170 4.170 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.617 5.617 11 C 0.266 3.734 12 C -0.297 4.297 13 C 0.057 3.943 14 N -0.343 5.343 15 C 0.272 3.728 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.018 3.982 19 N -0.921 5.921 20 Si 0.973 3.027 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.273 1.273 24 N -0.340 5.340 25 H 0.250 0.750 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.428 0.572 32 H 0.162 0.838 33 H 0.201 0.799 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.622 -12.293 -14.212 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.237 4.237 3 C 0.089 3.911 4 O -0.305 6.305 5 C 0.027 3.973 6 H 0.154 0.846 7 C -0.228 4.228 8 C 0.302 3.698 9 O -0.414 6.414 10 N -0.269 5.269 11 C 0.011 3.989 12 C -0.328 4.328 13 C -0.091 4.091 14 N -0.125 5.125 15 C 0.153 3.847 16 C -0.585 4.585 17 H 0.071 0.929 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.797 3.203 21 H -0.197 1.197 22 H -0.198 1.198 23 H -0.197 1.197 24 N -0.171 5.171 25 H 0.267 0.733 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.266 0.734 32 H 0.180 0.820 33 H 0.217 0.783 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.912 -11.826 -13.762 22.864 hybrid contribution 0.160 -0.206 0.410 0.486 sum -13.751 -12.032 -13.352 22.631 Atomic orbital electron populations 1.25864 0.96975 0.99437 0.96231 1.23171 0.95139 1.01980 1.03427 1.19517 0.84425 1.02370 0.84823 1.88072 1.19757 1.89764 1.32865 1.21916 0.82772 0.93902 0.98745 0.84580 1.22314 1.02851 0.94301 1.03299 1.21353 0.80678 0.83632 0.84133 1.90648 1.50933 1.51551 1.48237 1.42449 1.08667 1.37172 1.38593 1.19422 0.91611 0.93708 0.94155 1.21698 1.01287 1.04760 1.05085 1.23146 0.83671 1.01360 1.00966 1.48864 1.06816 1.28228 1.28636 1.19357 0.81152 0.91739 0.92413 1.21393 1.05802 0.93204 1.38109 0.92872 1.25756 0.99079 0.97715 0.95737 1.69996 1.26593 1.15564 1.43791 0.85329 0.78328 0.78518 0.78133 1.19654 1.19795 1.19734 1.77251 1.18599 1.09873 1.11387 0.73337 0.88686 0.87573 0.87932 0.92887 0.88935 0.73376 0.82021 0.78253 0.95915 0.92420 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 19.25 74.32 1.43 -1.24 16 2 C -0.24 -4.49 13.73 31.13 0.43 -4.06 16 3 C 0.16 2.39 6.22 70.18 0.44 2.83 16 4 O -0.39 -8.61 9.48 -129.99 -1.23 -9.84 16 5 C 0.09 1.51 3.13 29.85 0.09 1.60 16 6 H 0.14 1.19 7.79 -2.39 -0.02 1.17 16 7 C -0.17 -2.15 9.48 71.98 0.68 -1.47 16 8 C 0.52 14.46 7.15 87.66 0.63 15.08 16 9 O -0.54 -20.22 13.64 15.92 0.22 -20.01 16 10 N -0.62 -17.85 5.41 -307.51 -1.66 -19.51 16 11 C 0.27 10.57 8.11 133.33 1.08 11.65 16 12 C -0.30 -11.96 9.61 22.11 0.21 -11.75 16 13 C 0.06 2.30 11.43 83.52 0.96 3.26 16 14 N -0.34 -16.22 3.67 -351.85 -1.29 -17.51 16 15 C 0.27 14.12 6.26 85.64 0.54 14.66 16 16 C -0.55 -30.76 9.24 25.60 0.24 -30.52 16 17 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 18 C 0.02 0.96 5.46 84.65 0.46 1.42 16 19 N -0.92 -52.06 13.29 21.45 0.28 -51.77 16 20 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 N -0.34 -15.67 12.42 -54.45 -0.68 -16.35 16 25 H 0.25 1.89 7.80 -4.42 -0.03 1.85 16 26 H 0.10 0.98 8.09 -2.38 -0.02 0.96 16 27 H 0.11 0.86 7.87 -2.38 -0.02 0.84 16 28 H 0.10 0.72 7.87 -2.39 -0.02 0.70 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.90 7.92 -2.38 -0.02 0.89 16 31 H 0.43 9.12 8.61 -92.71 -0.80 8.32 16 32 H 0.16 6.47 5.91 -2.92 -0.02 6.45 16 33 H 0.20 6.40 8.06 -2.91 -0.02 6.37 16 34 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 36 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -77.25 328.22 5.15 -72.10 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.30 Total: 16.05 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 7.18 Total: 1.46 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.35 Total: -105.14 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.02 Total: -29.85 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -77.25 5.15 -72.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456681138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.459 kcal (2) G-P(sol) polarization free energy of solvation -77.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds